Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TFAM	Gene	0	117.80	209.07	61.15	374.63	193.01	265.14	279.70	150.91	155.62	151.07	240.48	172.34	188.68	102.75	159.75	122.22	100.07	136.15	393.20	148.37	346.89	60.19	113.41	94.64	101.23	65.04	226.80	94.86	117.58
2	487519	Transcript	0	38.16	95.74	25.55	114.01	63.40	108.98	110.20	62.03	83.46	60.43	88.50	67.41	75.26	46.03	82.42	51.53	44.51	58.76	179.98	62.61	159.95	21.76	43.01	43.77	37.95	25.43	84.04	37.81	51.72
3	373899	Transcript	0	0.05	2.04	0.00	19.28	2.73	1.69	0.00	2.10	0.29	2.26	1.62	0.31	0.90	0.50	0.00	0.00	0.57	2.40	1.35	1.39	4.80	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.35
4	373895	Transcript	1	52.03	82.70	2.69	96.63	6.63	129.72	129.31	13.14	53.96	29.16	52.64	39.76	15.73	16.44	53.22	29.38	9.75	46.88	160.73	3.56	61.53	4.33	38.61	14.12	4.89	12.32	29.72	10.42	15.15
5	395377	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.56	1.82	0.00	1.60	0.59	3.67	1.01	0.53	0.20	0.00	1.01	1.51	1.57	4.53	0.47	0.00	0.00	0.00	0.14	0.00	0.00	0.00	2.66	0.03
6	IG41_SR1	SilentIntergenicRegion	0	21.87	148.33	5.45	97.73	40.47	305.27	98.12	11.45	124.39	49.80	79.04	74.19	93.96	34.88	82.98	63.19	41.99	46.43	130.18	46.91	196.05	16.76	16.84	51.49	29.26	18.99	81.29	21.17	101.12
7	IG41_AR1	ActiveIntergenicRegion	0	12.22	111.95	1.72	33.50	16.98	117.72	39.03	8.28	74.68	28.13	41.50	36.34	43.66	20.88	72.89	27.34	22.85	21.43	98.80	22.28	73.44	10.09	8.31	31.97	11.62	9.04	27.03	8.25	39.08
8	ER1a	ExonRegion	0	1.01	1.52	0.53	0.00	0.00	0.42	0.51	0.00	0.27	0.23	0.00	0.00	0.00	0.14	0.00	1.17	0.47	1.21	0.00	0.43	0.22	0.28	0.00	0.00	0.45	0.31	0.00	0.00	0.00
9	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00
10	ER1b	ExonRegion	0	18.23	5.17	9.20	138.78	71.76	7.78	23.74	28.65	5.84	9.20	12.73	10.21	7.25	4.26	8.62	11.60	8.03	16.71	13.53	16.90	11.33	13.51	15.66	2.03	6.46	12.17	13.85	12.36	7.10
11	E1_Ac	KnownBoundary	0	33.74	0.00	19.51	321.17	204.40	12.89	80.16	58.97	7.10	9.71	15.34	7.26	7.58	7.64	7.97	25.32	15.08	14.13	24.05	69.88	16.93	29.02	44.13	0.00	9.36	14.68	4.47	22.87	6.67
12	ER1c	ExonRegion	0	284.58	90.53	228.95	1342.13	728.16	167.48	272.87	445.73	87.79	126.02	198.84	231.95	229.84	116.35	91.16	125.26	118.98	156.94	176.08	151.07	212.48	210.59	209.51	57.14	119.90	190.90	261.28	236.69	179.19
13	E1_Ad	KnownBoundary	0	658.57	134.66	19.98	84.12	31.83	186.47	197.56	1158.10	168.49	67.55	93.26	167.59	252.14	202.42	75.14	66.09	92.60	70.64	144.99	392.49	249.25	524.00	69.74	126.27	149.46	96.04	55.16	46.05	150.38
14	ER1d	ExonRegion	0	534.85	243.46	10.43	61.66	48.57	359.35	448.32	904.64	199.63	209.64	188.36	294.21	407.57	196.54	165.09	326.06	159.11	367.57	434.99	322.97	518.82	341.91	241.32	99.73	278.46	240.25	39.88	180.30	280.03
15	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	2.81	3.18	0.00	0.00	0.00	0.00
16	E1a_E2a	KnownJunction	0	361.99	322.36	15.97	94.26	75.90	539.29	995.14	441.77	215.09	505.95	436.21	454.48	544.57	201.63	384.69	625.22	210.75	728.20	913.77	262.57	748.98	158.44	494.52	110.06	391.77	413.09	87.91	393.42	404.42
17	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	3.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	1.97	0.00	0.00	0.00
19	ER2a	ExonRegion	0	285.96	316.79	161.55	631.47	542.65	378.74	571.39	344.79	131.58	328.97	495.82	405.07	451.26	171.34	180.11	271.26	201.30	277.60	552.23	260.87	367.06	120.80	384.32	148.10	224.02	256.64	544.50	372.02	300.69
20	E2_Da	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	1.96	0.00	2.54	1.46	0.00	0.00	0.00	0.00	2.06	0.00	3.06	2.88	4.62	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	0.00	0.00
21	E2a_E3a	KnownJunction	0	0.00	4.36	0.00	9.92	0.00	1.96	0.00	4.03	0.00	0.00	1.20	0.00	0.00	1.02	0.00	0.00	0.00	4.62	0.00	3.64	5.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E2a_E4a	KnownJunction	0	376.09	417.08	557.37	2756.98	1349.19	575.86	573.98	399.77	199.52	364.50	391.45	258.37	339.78	157.71	186.56	289.62	129.16	270.09	671.23	416.39	577.87	163.60	182.47	159.05	240.91	132.60	388.29	159.24	208.61
23	I2	Intron	0	1.76	2.73	0.00	2.35	0.00	1.58	0.00	0.30	0.18	1.89	0.00	0.20	0.00	1.18	0.00	1.63	3.18	4.53	4.72	1.36	3.04	0.30	0.00	0.35	1.17	0.26	4.51	2.14	0.00
24	I2_AR1	ActiveIntronRegion	0	0.00	4.18	0.00	0.00	0.00	1.31	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.64	0.00	0.76	2.81	5.08	6.26	0.00	1.00	0.00	0.00	0.00	1.14	0.12	3.49	1.87	0.00
25	I2_SR1	SilentIntronRegion	0	2.71	1.98	0.00	3.62	0.00	1.74	0.00	0.46	0.28	1.92	0.00	0.31	0.00	1.48	0.00	2.10	3.41	4.28	3.94	2.09	4.15	0.46	0.00	0.54	1.20	0.33	5.09	2.30	0.00
26	E3_Aa	NovelBoundary	0	2.89	4.36	0.00	0.00	6.78	3.91	0.00	0.00	1.83	0.00	0.00	0.00	0.00	3.26	0.00	0.00	2.30	4.62	0.00	3.06	3.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER3a	ExonRegion	0	0.16	1.77	0.00	10.81	1.26	1.15	0.00	2.28	0.86	3.04	2.04	0.94	0.74	0.49	0.00	0.00	0.40	2.57	4.05	0.55	2.04	0.00	0.00	0.00	0.00	0.00	0.00	1.41	1.04
28	E3_Da	NovelBoundary	0	5.01	0.00	0.97	0.00	0.00	5.52	0.00	0.00	1.67	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	4.62	0.00	3.47	5.50	2.48	0.00	2.33	0.00	0.00	0.00	1.80	0.00
29	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	37.10	6.93	1.96	0.00	0.00	0.00	3.75	1.61	0.00	1.97	0.00	0.00	0.00	1.31	0.00	0.00	0.00	7.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I3_SR1	SilentIntronRegion	0	2.66	1.04	0.30	0.42	0.00	2.60	0.36	0.54	0.99	1.03	0.14	0.69	0.00	1.52	0.60	1.47	1.06	5.07	1.89	2.38	1.77	0.00	0.00	0.51	0.42	0.09	1.08	0.87	0.51
31	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	7.06	0.00	0.00	4.29	1.48	0.00	0.00	0.00	1.22	0.00	0.00	3.71	9.25	8.09	0.00	3.33	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
32	ER4a	ExonRegion	0	380.87	391.55	380.08	2270.32	1067.38	563.33	553.39	306.24	177.67	350.55	460.14	278.44	359.00	186.55	161.31	280.30	125.38	285.79	587.72	365.51	646.45	144.04	210.68	187.21	253.15	118.62	366.36	170.37	205.26
33	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.66	0.00
34	E4a_E5a	KnownJunction	0	390.78	404.77	139.27	2433.87	1221.71	648.37	551.72	252.46	230.74	347.53	470.41	274.60	438.31	173.82	198.72	341.11	122.05	350.87	954.24	399.11	784.64	96.17	246.64	276.35	249.06	148.70	321.19	160.23	231.79
35	ER5a	ExonRegion	0	328.92	497.80	70.91	1149.60	482.25	633.28	647.55	223.92	203.36	365.53	550.77	314.53	376.48	183.47	227.09	305.32	150.75	300.06	847.84	362.54	675.16	136.73	258.95	188.87	272.14	95.68	429.73	163.79	199.28
36	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.06	0.00	0.00	0.00	0.00	0.00	1.27	0.00	1.09	0.00	0.00	6.69	0.00	0.00	3.06	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00
37	E5a_E6a	KnownJunction	0	332.62	564.15	70.31	769.37	253.04	726.03	641.89	196.38	258.66	353.72	702.89	301.26	361.66	177.67	285.23	315.02	166.19	226.04	687.63	422.84	947.61	122.32	202.71	228.20	249.44	106.51	613.12	205.16	211.45
38	E5a_E7a	KnownJunction	1	52.03	82.70	2.69	96.63	6.63	129.72	129.31	13.14	53.96	29.16	52.64	39.76	15.73	16.44	53.22	29.38	9.75	46.88	160.73	3.56	61.53	4.33	38.61	14.12	4.89	12.32	29.72	10.42	15.15
39	I5	Intron	0	1.75	1.27	0.09	0.38	0.64	2.39	0.42	0.29	0.38	1.56	1.35	0.81	0.25	0.98	0.00	1.50	2.28	1.12	3.53	0.00	2.86	0.00	0.05	0.28	0.41	0.29	0.10	0.64	0.00
40	I5_SR1	SilentIntronRegion	0	2.11	2.15	0.00	0.00	0.00	2.56	0.61	1.58	0.48	2.48	0.00	1.26	0.19	1.62	0.00	1.36	1.37	0.83	1.37	0.00	2.89	0.00	0.27	0.80	0.00	0.00	0.00	0.00	0.00
41	I5_SR2	SilentIntronRegion	0	2.64	0.74	0.00	0.00	0.52	2.07	0.33	0.39	0.24	1.43	1.07	0.84	0.48	1.20	0.00	2.12	2.22	1.26	3.87	0.00	2.90	0.00	0.05	0.23	0.45	0.28	0.19	0.69	0.00
42	I5_SR3	SilentIntronRegion	0	0.68	1.74	0.20	0.87	0.89	2.75	0.49	0.00	0.54	1.59	1.88	0.72	0.00	0.62	0.00	0.80	2.47	1.00	3.49	0.00	2.82	0.00	0.00	0.26	0.43	0.34	0.00	0.69	0.00
43	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	4.87	0.00	0.00	4.51	1.88	3.13	0.00	0.00	2.04	0.00	7.50	1.31	9.25	0.00	0.00	3.77	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
44	ER6a	ExonRegion	0	338.02	397.71	99.21	909.82	333.56	675.37	690.31	296.39	206.05	371.35	728.68	376.32	478.01	221.44	213.93	270.58	194.22	293.56	756.52	394.17	781.57	141.23	280.00	176.98	321.08	123.32	625.68	195.76	229.12
45	E6_Da	NovelBoundary	0	95.32	88.71	59.95	303.91	157.54	170.66	206.32	123.77	81.43	108.49	196.61	146.05	210.97	78.90	56.81	82.31	99.31	9.25	0.00	95.43	282.30	31.94	103.38	32.42	88.01	37.64	181.50	54.41	94.15
46	E6a_E7a	KnownJunction	0	333.80	321.10	132.05	1015.69	441.23	636.94	697.91	319.90	193.10	305.50	640.60	346.14	506.80	208.01	222.84	276.01	202.04	272.79	752.60	316.24	816.09	136.23	278.36	136.62	300.16	126.25	582.75	169.03	240.77
47	I6	Intron	0	2.63	3.18	0.23	3.26	0.89	3.63	1.19	0.34	3.31	3.02	1.57	1.29	0.53	2.06	1.38	3.40	7.06	4.34	5.38	1.27	4.74	0.08	0.25	1.57	0.59	0.29	0.17	1.19	0.82
48	I6_SR1	SilentIntronRegion	0	2.42	2.89	0.35	3.54	0.69	3.58	1.70	0.39	2.17	4.07	1.26	0.91	0.68	2.58	0.65	3.17	7.26	4.50	5.63	1.30	4.92	0.00	0.38	0.91	0.70	0.33	0.26	1.03	1.27
49	I6_SR2	SilentIntronRegion	0	3.12	3.83	0.00	2.84	1.29	3.81	0.27	0.24	5.54	1.14	2.20	2.04	0.26	1.13	2.79	3.93	6.90	4.16	5.07	1.25	4.52	0.24	0.00	2.84	0.38	0.21	0.00	1.51	0.00
50	E7_Aa	NovelBoundary	0	5.72	0.00	0.00	0.00	0.00	1.69	0.00	1.99	8.59	2.04	0.00	3.04	0.00	3.28	7.77	3.82	10.74	9.25	8.09	0.00	3.29	0.00	0.00	5.08	3.37	0.00	0.00	0.00	0.00
51	ER7a	ExonRegion	0	441.89	495.73	118.84	975.92	465.82	941.19	845.24	285.43	238.07	386.37	819.90	439.96	501.87	241.45	276.79	253.38	235.28	253.38	866.42	394.04	973.07	142.20	284.85	244.14	322.33	135.27	723.29	201.95	239.07
52	E7_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	0.00	0.00	1.61	0.00	0.00	1.13	0.00	0.00	1.40	0.00	8.09	3.89	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00
53	E7a_E8a	KnownJunction	0	414.25	687.38	87.35	1054.95	538.20	984.09	862.74	235.84	250.62	450.83	1002.28	507.76	482.98	244.34	320.51	366.81	250.62	374.89	1302.66	468.74	1021.85	124.95	252.31	238.25	302.82	148.44	753.22	223.40	243.51
54	ER7b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.56	1.82	0.00	1.60	0.59	3.67	1.01	0.53	0.20	0.00	1.01	1.51	1.57	4.53	0.47	0.00	0.00	0.00	0.14	0.00	0.00	0.00	2.66	0.03
55	E8_Aa	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	3.76	0.00	0.00	0.00	0.00	2.40	1.17	1.50	0.00	8.37	3.21	1.40	4.62	0.00	0.00	1.68	0.00	2.31	0.00	0.00	0.00	0.00	0.00	0.00
56	ER8a	ExonRegion	0	347.22	506.89	92.19	1171.70	490.36	822.78	909.06	282.84	254.86	462.25	935.39	594.24	559.23	252.31	319.82	304.96	274.02	321.12	1034.58	358.13	861.14	130.11	305.38	225.60	298.12	134.95	835.08	211.40	242.58
57	E8_Da	KnownBoundary	1	368.01	796.35	76.89	1337.72	623.97	1062.97	1209.23	261.02	364.03	447.75	691.06	544.63	551.16	221.72	463.62	376.76	241.61	419.97	1715.38	379.34	1156.38	150.76	291.46	205.77	219.96	96.60	761.27	164.09	239.71
58	ER8b	ExonRegion	0	317.38	585.72	64.47	1024.83	515.78	725.93	789.07	250.07	334.46	435.23	738.51	513.30	520.28	236.04	367.86	293.10	254.54	358.31	1104.74	342.55	813.36	144.25	276.32	228.91	251.47	135.21	882.41	184.05	294.21
59	E8_Db	KnownBoundary	0	314.51	466.14	47.06	603.51	462.60	662.57	769.37	252.56	507.98	428.34	569.11	512.49	543.36	218.49	386.68	315.40	265.34	356.14	1189.59	381.57	698.12	91.79	224.82	227.42	193.56	129.60	593.59	151.51	392.37
60	ER8c	ExonRegion	0	75.32	189.96	50.57	228.01	126.80	217.55	219.89	124.06	166.64	120.64	177.00	134.81	150.52	91.92	164.84	101.88	88.55	116.30	359.97	124.78	319.67	43.24	86.01	87.54	75.44	50.55	168.09	75.62	103.45
61	IG42_AR1	ActiveIntergenicRegion	0	3.44	21.92	2.69	5.76	5.86	21.81	7.28	2.22	6.18	13.34	14.58	12.16	10.90	9.27	6.84	11.34	6.59	15.79	23.73	5.93	37.28	0.72	11.60	10.80	5.45	3.47	12.19	5.56	6.17
62	IG42_AR2	ActiveIntergenicRegion	0	3.79	20.59	1.38	0.00	0.00	15.07	0.78	0.00	1.34	11.83	12.50	7.18	4.55	2.76	7.75	2.92	2.08	5.14	9.75	0.86	11.74	0.00	4.52	10.76	10.56	0.18	1.27	3.45	3.56
63	IG42_AR3	ActiveIntergenicRegion	0	6.43	36.13	3.37	0.00	0.00	30.09	2.02	0.00	5.62	19.57	21.42	15.53	13.28	7.66	11.20	5.06	4.79	19.41	24.14	6.56	24.09	0.00	9.64	19.60	18.58	1.57	3.66	13.22	6.26
64	IG42_AR4	ActiveIntergenicRegion	0	7.14	35.59	3.55	0.00	0.00	35.97	2.02	0.00	8.05	27.67	22.41	17.11	15.59	8.16	11.20	5.06	5.01	25.02	33.19	8.43	27.34	0.00	10.85	25.81	20.01	5.76	6.72	16.30	10.07
65	IG42_SR1	SilentIntergenicRegion	0	7.97	22.39	4.22	12.92	5.93	32.48	2.68	3.84	22.63	27.95	19.62	20.99	22.12	11.34	26.02	10.78	9.73	18.59	27.54	7.78	43.66	2.39	12.39	14.04	13.33	11.48	22.19	19.60	17.56
66	IG42_AR5	ActiveIntergenicRegion	0	6.09	34.32	9.89	5.30	0.87	41.92	4.76	5.52	25.34	22.37	17.11	18.48	19.50	9.92	13.23	12.07	14.52	13.80	23.61	15.80	83.29	0.60	10.48	10.44	9.88	7.58	40.69	10.91	16.36
67	IG42_AR6	ActiveIntergenicRegion	0	3.87	19.95	12.44	14.57	5.02	21.57	3.99	12.35	22.71	19.24	23.25	17.07	22.77	15.74	17.92	7.44	15.92	15.14	21.23	3.96	37.30	3.95	11.20	16.23	15.61	18.35	36.71	22.13	16.04