Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RPP38	Gene	0	111.91	78.37	130.76	173.09	144.83	92.23	100.94	209.09	94.64	83.76	105.63	94.04	129.00	76.63	99.57	76.92	95.25	66.02	96.03	126.56	115.66	159.38	103.02	88.42	102.79	100.64	100.07	100.85	145.68
2	378203	Transcript	0	0.00	0.00	1.37	12.59	16.33	0.99	0.39	0.00	1.40	1.60	1.45	1.20	2.02	0.58	0.00	0.00	0.86	4.70	3.27	1.01	1.86	1.40	2.86	1.55	0.56	1.14	1.98	3.67	3.62
3	378201	Transcript	0	0.53	0.06	0.00	0.00	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00	0.02	0.01	2.29	0.00	0.00	5.92	5.98	0.00	0.00	0.45	0.00	0.00	0.02	0.00	0.00	0.00	0.01
4	378202	Transcript	0	95.44	78.43	77.98	351.79	359.29	45.43	69.86	184.53	97.63	75.74	98.86	50.06	86.97	43.74	89.30	109.55	41.78	27.74	80.92	87.41	79.38	105.26	97.47	33.26	109.83	71.54	110.38	71.40	131.03
5	378197	Transcript	0	17.78	9.52	31.39	67.78	26.52	7.74	11.22	15.95	8.08	10.35	11.97	10.46	10.99	9.78	16.56	17.65	14.61	17.22	16.69	36.65	16.73	32.81	16.67	8.61	16.97	25.31	8.40	21.31	19.19
6	441850	Transcript	0	12.62	42.66	37.50	27.82	13.85	29.54	12.47	77.98	18.06	22.81	30.72	20.45	23.63	26.68	48.63	36.18	20.10	47.01	24.28	66.24	38.47	55.67	45.90	17.05	39.25	36.99	6.46	12.40	31.33
7	ER1a	ExonRegion	0	0.00	0.00	1.37	12.59	16.33	0.99	0.39	0.00	1.40	1.60	1.45	1.20	2.02	0.58	0.00	0.00	0.86	4.70	3.27	1.01	1.86	1.40	2.86	1.55	0.56	1.14	1.98	3.67	3.62
8	E1_Ab	KnownBoundary	0	2.83	0.00	11.29	30.20	52.32	3.30	0.00	0.00	2.92	3.52	5.60	10.81	7.67	2.97	0.00	0.00	4.05	9.25	8.09	3.56	3.69	4.23	6.60	7.78	3.41	7.38	10.83	6.29	11.32
9	ER1b	ExonRegion	0	3.60	1.42	6.95	24.46	13.40	1.51	3.15	3.56	6.00	6.90	1.20	4.50	6.85	2.01	0.00	1.88	5.32	10.19	8.82	7.15	3.73	9.51	11.08	4.25	3.84	11.79	4.17	6.03	13.73
10	E1_Ac	KnownBoundary	0	11.44	0.00	2.29	0.00	7.37	0.00	2.69	10.95	5.18	8.87	1.20	3.10	11.56	0.00	0.00	0.00	1.22	4.62	0.00	0.00	3.41	6.90	17.43	0.00	6.78	11.46	0.00	0.00	1.42
11	ER1c	ExonRegion	0	28.20	14.69	29.39	93.49	111.65	9.87	26.72	57.87	17.49	22.68	26.02	26.85	42.71	14.82	24.71	27.19	16.79	44.47	28.75	27.89	12.98	29.69	29.53	9.15	23.40	23.51	27.33	35.32	44.71
12	E1_Ad	NovelBoundary	0	39.76	9.11	33.83	166.51	214.43	20.22	57.79	79.87	26.86	33.31	48.31	39.55	75.38	27.32	63.98	56.30	26.92	110.96	89.02	49.95	29.24	57.85	56.29	17.29	39.97	19.70	58.20	76.65	93.92
13	E1_Da	NovelBoundary	0	18.05	0.00	10.12	53.28	36.40	11.74	8.64	20.25	7.77	2.04	4.75	4.94	11.69	0.00	0.00	22.95	0.00	0.00	0.00	4.13	16.32	14.88	27.63	6.10	3.75	21.50	10.09	11.28	3.66
14	E1a_E1e	NovelJunction	0	0.00	0.00	7.72	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	3.95	0.00	0.00	0.00	4.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.14
15	E1a_E2a	KnownJunction	0	57.04	8.92	92.71	138.69	223.71	24.56	51.84	84.25	19.06	33.23	24.90	52.26	49.10	28.69	44.25	46.21	45.58	32.36	32.37	33.99	25.47	65.05	41.37	30.98	62.06	99.95	49.45	82.81	109.74
16	E1a_E3a	KnownJunction	0	95.44	78.43	77.98	351.79	359.29	45.43	69.86	184.53	97.63	75.74	98.86	50.06	86.97	43.74	89.30	109.55	41.78	27.74	80.92	87.41	79.38	105.26	97.47	33.26	109.83	71.54	110.38	71.40	131.03
17	ER1d	ExonRegion	0	132.97	79.69	144.50	488.59	535.06	69.65	119.45	228.23	89.17	92.51	125.18	102.62	138.90	65.58	136.90	165.34	75.28	145.66	161.59	122.11	94.41	169.99	141.38	53.70	139.23	158.73	148.29	164.63	221.96
18	E1_Ae	KnownBoundary	1	25.25	4.85	35.78	133.73	33.31	10.97	8.07	9.26	6.12	23.61	10.98	13.95	11.88	9.75	25.91	33.12	26.13	4.62	0.00	28.53	25.19	30.34	30.49	3.05	9.17	38.62	9.24	40.26	21.69
19	ER1e	ExonRegion	1	30.40	3.28	31.52	128.97	49.82	17.25	16.13	16.23	11.13	20.74	12.33	13.83	15.23	8.49	39.71	36.12	21.58	25.80	17.69	29.64	29.05	41.46	43.56	6.45	8.71	54.44	15.32	35.12	29.77
20	ER1f	ExonRegion	0	35.93	13.56	33.63	33.88	25.93	18.94	20.38	40.66	12.27	21.71	17.55	21.10	25.82	25.17	31.35	29.64	26.31	26.07	29.86	59.78	25.94	51.94	36.63	19.21	23.86	42.70	24.92	34.81	36.36
21	E1_Db	NovelBoundary	0	14.04	3.59	10.59	10.14	0.00	5.14	5.84	4.43	0.00	5.67	1.61	10.84	1.37	9.48	8.37	6.96	14.97	9.63	0.00	18.69	8.90	13.32	4.88	7.60	5.72	6.18	2.09	0.00	2.05
22	E1b_E2a	KnownJunction	0	22.95	17.06	62.64	59.75	24.76	5.29	16.54	29.76	11.42	9.59	22.97	16.32	17.10	18.59	9.97	16.83	20.24	23.12	32.37	80.30	19.01	56.98	6.45	19.38	41.48	21.50	9.89	27.99	27.14
23	E1b_E3a	KnownJunction	0	12.62	42.66	37.50	27.82	13.85	29.54	12.47	77.98	18.06	22.81	30.72	20.45	23.63	26.68	48.63	36.18	20.10	47.01	24.28	66.24	38.47	55.67	45.90	17.05	39.25	36.99	6.46	12.40	31.33
24	Ix	Intron	0	2.97	3.23	2.28	2.35	2.59	4.40	0.92	2.97	2.23	3.28	1.68	2.78	1.31	3.82	4.78	3.06	7.42	5.07	2.74	3.54	3.74	1.09	0.55	3.69	2.92	2.50	0.65	3.17	2.31
25	Ix_SR1	SilentIntronRegion	0	3.43	3.42	2.52	2.88	3.02	4.49	0.87	3.23	2.18	3.32	1.58	2.83	1.42	4.07	5.23	3.29	7.86	5.12	2.74	4.07	3.68	1.12	0.56	3.81	3.10	2.73	0.79	2.97	2.48
26	Ix_AR2	ActiveIntronRegion	0	1.14	2.81	1.45	0.00	0.79	4.48	1.31	2.03	2.91	3.49	2.48	2.94	0.84	3.05	2.84	2.41	6.06	5.58	2.89	1.36	4.63	1.17	0.59	3.74	2.53	1.61	0.00	4.75	1.81
27	Ix_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.33	0.00	1.77	0.09	2.28	0.27	1.67	0.00	0.77	5.17	0.00	1.08	0.42	4.70	0.65	1.70	0.00	0.00	0.00	0.00	0.12	0.00	0.00	0.15
28	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	5.78	1.94	0.00	0.00	0.00	0.00	0.00	2.28	0.00	0.00	1.10	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.58
29	ER2a	ExonRegion	0	70.36	36.77	80.19	100.04	74.14	28.26	36.74	101.45	26.59	34.86	43.49	56.44	66.06	59.93	41.75	45.02	54.37	41.17	51.27	89.89	35.64	118.22	67.59	45.88	57.86	70.54	53.01	58.74	99.05
30	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.07	1.69	0.00	0.00	2.83	1.64	1.55	0.00	4.24	0.00	0.00	0.00	2.36	9.25	8.09	0.00	1.93	0.00	0.00	12.68	0.00	2.06	0.00	1.66	2.84
31	E2a_E3a	KnownJunction	1	73.85	35.97	45.35	83.04	42.44	47.69	27.86	142.53	16.75	42.98	37.20	56.78	50.98	79.30	33.29	67.40	39.17	37.76	72.83	132.40	56.44	194.57	122.73	46.36	71.15	63.56	46.86	52.66	75.24
32	Ix	Intron	0	0.00	0.00	0.00	0.00	0.00	3.89	0.00	1.30	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.26	0.00	4.04	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00
33	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	3.95	0.00	1.32	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	4.10	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00
34	E3_Aa	NovelBoundary	0	2.54	4.85	8.77	10.35	7.07	10.59	2.92	6.77	8.40	8.95	5.63	3.76	0.00	5.21	7.77	7.34	3.15	4.62	32.37	15.30	5.86	4.96	0.00	21.59	3.67	0.00	0.00	0.00	18.22
35	ER3a	ExonRegion	0	133.62	107.61	200.12	256.23	205.60	115.04	140.21	290.74	100.35	107.23	130.25	149.26	161.26	93.60	116.10	103.48	139.78	89.25	111.71	157.51	135.20	219.08	142.26	86.08	130.26	146.83	126.76	144.71	194.04
36	E3_Da	KnownBoundary	0	347.07	229.29	213.60	539.66	496.64	349.99	317.14	769.13	220.57	234.20	191.39	223.97	248.35	210.64	371.13	227.89	158.06	210.88	283.24	366.77	360.99	502.70	252.70	205.05	265.92	243.45	123.20	226.27	254.10
37	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER3b	ExonRegion	0	315.60	164.65	387.52	572.96	390.74	219.75	257.82	690.76	212.61	199.21	252.03	278.69	320.29	202.19	222.21	194.50	277.25	152.63	221.21	260.56	234.44	402.30	225.19	200.73	205.43	256.95	197.61	242.52	315.13
39	E3_Db	KnownBoundary	0	222.79	76.30	389.17	261.63	263.65	154.35	207.98	316.71	156.62	112.57	216.73	173.43	209.89	150.44	291.60	178.09	187.19	79.11	161.85	240.65	184.03	284.22	177.64	142.06	142.30	134.24	231.49	209.20	185.47
40	ER3c	ExonRegion	0	192.82	150.21	186.70	218.19	208.34	185.58	179.10	328.96	213.79	154.70	209.90	131.72	242.19	132.35	193.24	118.22	144.94	94.99	175.66	218.83	248.28	254.40	167.33	197.76	199.39	139.08	192.59	155.13	255.24
41	E3_Dc	NovelBoundary	0	10.03	14.35	1.84	15.96	11.05	16.15	2.12	3.73	7.92	4.43	2.34	2.23	3.53	1.64	22.92	5.66	8.73	0.00	0.00	15.46	7.42	3.60	9.11	4.90	1.40	3.18	1.84	0.00	7.33
42	E3_De	NovelBoundary	0	0.00	7.37	1.54	8.84	0.00	5.33	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	0.00	0.00
43	ER3d	ExonRegion	0	0.54	26.28	0.28	47.53	23.66	6.19	2.02	4.14	5.34	3.97	2.98	2.47	1.95	3.63	0.00	0.63	3.76	5.46	5.66	12.65	9.98	1.35	0.00	0.00	6.07	1.96	2.29	2.45	4.03
44	ER3e	ExonRegion	0	0.00	8.21	0.00	14.63	4.98	0.69	1.01	1.84	1.69	0.72	0.60	1.24	0.65	2.27	0.00	0.00	2.00	2.73	0.00	0.00	2.14	0.00	0.00	0.00	0.71	0.00	0.00	0.82	0.67
45	Ix	Intron	0	3.23	4.85	1.12	5.21	1.91	6.30	1.24	2.06	3.22	3.71	1.46	1.90	0.94	3.48	4.42	2.66	7.59	5.34	2.50	4.00	2.79	1.01	1.11	15.14	2.87	1.49	1.02	0.82	2.54
46	Ix_SR1	SilentIntronRegion	0	3.77	2.27	0.00	2.52	0.00	2.90	1.42	1.30	1.58	0.51	0.00	0.87	0.46	0.48	4.87	0.87	5.25	3.50	1.12	0.00	2.01	0.00	0.64	6.81	1.01	0.00	0.00	0.57	3.29
47	Ix_AR1	ActiveIntronRegion	0	3.14	5.36	1.34	5.73	2.28	6.96	1.21	2.21	3.54	4.32	1.74	2.09	1.04	4.06	4.34	3.00	8.05	5.71	2.76	4.77	2.94	1.20	1.20	16.75	3.23	1.78	1.22	0.87	2.40
48	E4_Aa	NovelBoundary	0	6.02	4.85	6.03	30.20	0.00	15.08	8.24	0.00	13.95	5.47	0.00	5.84	2.61	7.47	0.00	7.19	12.29	4.50	8.09	10.75	8.78	8.17	4.78	26.50	1.86	0.00	0.00	7.95	11.03
49	ER4a	ExonRegion	0	1.06	0.12	0.00	0.00	0.00	0.00	0.00	0.00	0.06	0.00	0.00	0.00	0.04	0.02	4.57	0.00	0.00	11.84	11.96	0.00	0.00	0.91	0.00	0.00	0.04	0.00	0.00	0.00	0.02