Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	KLF6	Gene	0	222.52	247.67	140.99	222.11	214.77	228.86	144.62	47.41	183.66	199.43	189.10	154.08	223.17	269.92	83.61	187.89	225.35	136.64	130.57	136.47	171.08	137.74	153.59	199.36	222.32	101.07	152.47	43.41	110.83
2	497571	Transcript	0	209.81	174.16	168.91	230.94	191.55	217.27	151.40	47.77	143.46	175.32	202.81	143.72	195.49	256.35	73.25	170.38	210.95	127.85	100.52	125.97	157.28	130.35	150.05	166.98	193.61	98.76	157.04	39.30	104.39
3	322510	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	469435	Transcript	0	59.74	26.47	18.12	17.77	20.05	17.05	5.32	3.65	10.43	13.13	11.01	23.48	8.47	42.13	4.37	21.86	28.61	19.06	12.47	13.10	14.02	8.06	7.73	11.71	36.50	10.66	11.06	6.06	5.17
5	380946	Transcript	0	2.98	3.07	2.49	0.07	1.31	5.04	2.38	1.11	0.00	2.18	0.31	1.10	3.07	3.72	0.00	3.71	3.96	6.77	0.00	1.39	2.50	1.52	2.98	1.94	1.61	1.24	0.90	0.42	0.00
6	173785	Transcript	0	5.60	4.17	3.91	0.00	0.00	1.53	8.53	0.00	2.95	5.47	6.04	3.40	1.50	4.72	0.00	7.27	2.41	0.00	8.09	4.13	3.45	1.94	4.14	0.00	1.70	0.00	10.78	0.00	0.00
7	492125	Transcript	0	69.25	21.79	18.12	12.39	26.89	24.32	11.09	5.47	13.42	14.08	14.99	34.28	12.39	40.60	12.74	19.24	45.04	18.24	18.15	9.75	23.38	11.22	12.05	15.50	41.32	20.25	12.93	11.73	14.60
8	461124	Transcript	0	3.01	4.75	1.92	18.98	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	1.13	0.00	0.00	3.94	0.00	0.00	0.00	5.01	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	0.00	0.00	1.38	0.00	1.92	0.11	0.00	0.00	0.00	1.67	1.01	0.48	3.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	0.00	0.00	1.09	0.00	0.00	2.68
10	ER1b	ExonRegion	0	45.81	13.84	60.69	77.10	116.92	40.65	16.30	10.31	11.99	36.16	14.96	17.09	28.41	22.27	6.72	74.19	46.92	37.27	11.19	12.81	31.36	71.77	41.56	9.53	20.50	40.62	15.33	11.50	26.57
11	E1_Ac	KnownBoundary	0	39.05	33.74	28.75	117.34	152.23	56.55	15.91	9.70	11.66	31.60	26.57	13.76	22.51	22.82	16.74	84.84	31.69	55.35	16.18	15.30	9.47	75.60	30.19	14.18	28.79	52.05	9.79	19.68	19.38
12	E1_Ad	KnownBoundary	0	215.06	44.40	254.18	468.27	649.17	80.42	35.59	11.65	20.49	132.50	86.46	107.47	89.61	91.88	0.00	181.68	204.20	64.73	16.18	85.84	80.70	242.79	257.53	19.26	58.12	109.82	64.95	43.63	91.05
13	ER1c	ExonRegion	0	196.77	62.41	255.16	517.00	630.17	102.55	52.41	27.62	28.09	148.28	84.38	99.57	105.09	84.72	16.80	248.01	187.12	147.10	43.00	75.89	94.85	288.98	247.55	32.05	71.32	145.53	67.95	56.40	109.12
14	ER1d	ExonRegion	0	117.61	51.03	95.06	132.60	135.18	72.20	39.56	24.59	18.33	85.22	54.76	77.84	91.25	93.36	12.09	121.29	135.32	81.51	30.83	56.28	55.87	114.48	130.10	37.52	52.98	77.71	40.45	26.73	59.95
15	E1_Da	NovelBoundary	0	26.72	0.00	4.39	36.88	0.00	0.00	0.00	0.00	2.83	3.48	1.33	7.38	1.40	10.95	8.37	0.00	6.62	0.00	0.00	0.00	1.89	6.71	5.02	0.00	5.34	8.11	2.34	7.68	1.45
16	E1a_E2a	KnownJunction	0	0.00	0.00	1.10	0.00	0.00	1.96	2.23	2.39	0.00	0.00	0.00	0.00	1.56	1.00	0.00	6.27	4.70	4.88	0.00	0.00	2.05	0.00	2.51	3.05	1.93	2.06	0.00	0.00	0.00
17	E1a_E3a	KnownJunction	0	284.07	145.62	139.55	95.98	100.51	180.06	85.99	65.94	49.18	194.42	188.26	215.69	229.53	337.69	44.05	217.94	335.55	234.90	121.39	88.82	89.37	188.05	339.08	144.04	197.84	178.01	179.95	73.55	146.15
18	I1	Intron	0	16.10	16.01	7.27	7.56	9.65	10.33	2.39	1.21	1.33	5.71	3.76	7.08	3.75	15.08	0.61	7.10	6.10	10.71	5.05	3.17	5.64	5.46	2.38	2.55	13.00	2.49	1.93	2.36	0.71
19	I1_SR1	SilentIntronRegion	0	16.18	16.09	7.31	7.60	9.70	10.37	2.40	1.22	1.34	5.74	3.78	7.11	3.77	15.16	0.61	7.14	6.13	10.76	5.08	3.18	5.67	5.49	2.40	2.56	13.06	2.50	1.94	2.38	0.71
20	E2_Aa	NovelBoundary	0	21.23	17.16	9.84	0.00	24.91	6.87	4.92	2.49	1.31	6.87	10.15	9.22	0.00	14.87	0.00	10.48	6.35	9.25	16.18	0.00	5.82	0.00	2.27	6.10	3.18	6.05	0.00	0.00	3.96
21	ER2a	ExonRegion	0	3.93	9.21	2.21	0.22	3.92	7.96	1.99	0.95	0.00	2.63	0.94	1.48	5.10	5.99	0.00	4.87	3.78	10.79	0.00	0.04	3.89	2.08	4.11	2.77	2.90	1.67	0.42	1.26	0.00
22	E2_Da	NovelBoundary	0	21.71	0.00	7.80	0.00	12.67	1.96	2.35	5.08	1.40	7.19	0.00	10.66	7.74	18.63	0.00	3.14	6.62	18.49	8.09	11.58	1.52	4.72	4.78	0.00	6.36	15.66	2.14	2.20	4.23
23	E2a_E3a	KnownJunction	0	5.01	0.00	4.16	0.00	0.00	5.22	2.92	0.00	0.00	3.91	0.00	1.81	2.55	4.17	0.00	0.00	3.40	4.62	0.00	4.13	1.56	2.48	2.31	0.00	0.00	0.00	2.29	0.00	0.00
24	I2	Intron	0	32.76	12.03	9.71	8.77	14.43	12.96	3.29	2.72	2.37	4.93	7.52	13.16	5.74	28.91	1.50	11.42	12.09	12.07	7.65	4.37	6.76	3.31	6.17	5.04	21.63	5.53	5.13	5.81	3.34
25	I2_SR1	SilentIntronRegion	0	27.35	18.09	6.38	0.00	4.03	11.15	1.02	3.13	0.00	2.41	3.44	7.17	1.26	13.79	0.00	4.10	5.37	7.67	0.22	0.98	3.35	5.18	7.55	1.40	11.80	5.46	0.93	0.52	1.15
26	I2_AR1	ActiveIntronRegion	0	33.20	11.65	9.96	9.38	15.16	13.10	3.45	2.70	2.53	5.11	7.81	13.59	6.05	29.98	1.60	11.94	12.57	12.39	8.17	4.61	7.00	3.19	6.09	5.30	22.33	5.54	5.43	6.18	3.50
27	E3_Aa	NovelBoundary	0	43.06	17.35	16.22	0.00	21.22	15.04	2.86	0.00	4.11	12.82	4.21	18.92	15.48	41.59	0.00	13.85	33.43	28.51	24.28	5.95	13.36	6.90	6.99	4.61	28.53	4.29	6.41	5.62	6.04
28	ER3a	ExonRegion	0	431.90	268.84	349.20	255.58	316.97	351.07	192.32	97.92	109.34	343.99	265.09	239.02	358.54	569.48	32.29	354.30	369.61	274.60	108.45	249.25	240.18	276.73	330.84	214.42	323.33	244.65	179.76	96.53	170.89
29	E3_Da	KnownBoundary	0	482.38	294.24	357.03	359.34	249.50	644.61	221.08	96.25	170.35	437.04	223.81	173.07	335.10	537.85	54.21	402.54	279.43	326.73	169.72	218.41	407.16	299.19	241.62	265.82	393.44	236.16	140.20	58.10	133.47
30	E3_Ac	KnownBoundary	0	493.35	279.31	193.64	435.05	228.28	340.55	163.81	150.64	120.32	257.29	249.72	150.57	214.89	498.32	35.48	244.26	155.09	249.15	105.20	200.79	233.16	363.32	212.66	228.38	404.31	165.69	160.22	30.78	86.03
31	ER3b	ExonRegion	0	635.90	330.68	458.55	426.57	270.66	636.47	262.72	142.38	189.50	472.11	302.68	251.09	420.88	756.78	56.01	447.94	366.30	351.15	162.93	262.33	440.28	393.60	292.94	283.23	508.37	272.42	186.21	65.74	166.43
32	ER3c	ExonRegion	0	643.80	342.60	423.02	454.68	242.04	615.85	232.29	165.91	189.35	418.86	293.82	235.66	386.49	735.46	53.04	374.10	348.42	324.13	134.44	265.20	405.35	440.93	281.13	303.82	513.72	252.02	176.58	54.65	160.11
33	ER3d	ExonRegion	0	648.76	320.83	392.73	504.57	242.44	562.70	199.56	169.38	184.63	365.76	289.59	221.81	354.20	728.66	48.54	321.40	340.92	307.49	104.09	266.08	337.58	442.87	272.44	319.09	525.04	210.07	166.67	40.75	152.56
34	ER3e	ExonRegion	0	622.41	316.89	319.55	503.89	294.38	462.71	205.54	173.69	162.84	342.31	291.20	234.35	335.15	698.23	39.90	286.05	335.51	281.87	148.08	246.20	246.05	431.93	294.24	297.06	475.66	210.70	152.59	39.78	144.53
35	E3_Dc	KnownBoundary	0	465.93	280.48	116.40	440.44	305.65	400.29	159.80	106.15	108.11	257.25	214.04	141.05	192.94	399.22	34.28	264.07	178.18	288.20	275.14	196.99	154.06	297.39	240.04	235.79	305.32	144.53	90.20	28.35	96.63
36	E3_Ad	KnownBoundary	0	643.65	335.64	238.21	414.34	557.21	352.60	200.54	175.97	137.13	362.51	275.51	235.24	330.58	654.84	84.91	362.22	300.45	350.61	178.03	262.40	211.18	478.83	278.36	297.58	489.59	221.22	100.54	67.67	131.49
37	ER3f	ExonRegion	0	699.39	363.22	289.13	443.46	466.49	459.34	221.01	180.75	150.15	376.26	304.50	263.28	379.22	730.82	54.41	342.10	354.25	315.71	193.48	260.89	230.57	499.23	332.46	318.91	496.64	240.07	114.73	51.93	153.44
38	ER3g	ExonRegion	0	600.75	341.87	330.06	295.91	240.53	433.95	228.96	114.56	136.33	372.59	273.72	283.71	382.23	666.55	62.74	375.83	394.21	320.42	163.94	240.55	269.99	392.59	341.95	239.22	374.63	247.19	148.02	82.11	172.42
39	E3_Dd	KnownBoundary	0	256.70	110.52	180.68	189.38	112.89	143.03	99.44	53.20	50.28	171.53	133.78	123.19	160.94	284.54	27.11	125.53	172.60	116.36	40.46	130.75	131.64	198.31	199.36	107.25	159.27	104.71	55.31	41.70	51.01
40	E3_De	KnownBoundary	0	224.03	145.13	201.49	210.52	78.99	142.50	100.01	52.65	39.53	164.54	119.45	140.42	165.18	267.67	44.85	163.40	202.09	151.93	56.65	118.76	91.21	111.14	180.75	85.90	128.96	165.73	39.01	60.43	58.70
41	E3e_E3f	KnownJunction	0	5.60	4.17	3.91	0.00	0.00	1.53	8.53	0.00	2.95	5.47	6.04	3.40	1.50	4.72	0.00	7.27	2.41	0.00	8.09	4.13	3.45	1.94	4.14	0.00	1.70	0.00	10.78	0.00	0.00
42	ER3h	ExonRegion	0	363.57	200.88	316.42	257.07	141.02	215.61	152.27	77.61	69.92	254.55	198.47	211.51	268.80	435.59	59.88	208.49	309.76	232.82	90.86	189.61	160.96	233.39	278.05	139.49	223.53	192.59	71.29	77.49	84.87
43	ER3i	ExonRegion	0	411.09	191.80	395.46	359.60	257.29	318.70	204.32	89.93	98.35	283.70	246.09	265.18	302.44	464.13	75.83	251.74	358.62	239.44	113.35	221.39	215.68	277.19	293.76	163.50	249.29	221.47	169.96	84.32	134.77
44	E3_Df	KnownBoundary	0	35.92	3.68	11.78	0.00	12.97	12.97	2.29	2.54	0.00	1.52	5.35	9.31	1.56	20.58	0.00	20.96	7.18	13.87	0.00	3.89	3.53	4.33	2.46	5.56	14.24	6.05	18.04	1.80	4.92
45	E3f_E3f	KnownJunction	0	382.70	107.23	361.96	368.83	248.91	309.93	235.84	91.22	88.37	236.08	321.76	231.35	245.04	436.13	68.57	254.74	334.22	215.76	80.92	182.52	208.57	238.13	257.43	165.33	260.46	189.38	215.29	64.70	138.36
46	E3f_E4a	NovelJunction	0	11.21	0.00	13.88	10.35	26.38	0.00	0.00	0.00	0.00	1.80	3.16	12.44	1.97	7.91	0.00	10.40	0.00	0.00	0.00	0.00	9.47	14.68	17.48	0.00	15.34	0.00	0.00	8.94	1.72
47	E3f_E4b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER3j	ExonRegion	0	59.74	26.47	18.12	17.77	20.05	17.05	5.32	3.65	10.43	13.13	11.01	23.48	8.47	42.13	4.37	21.86	28.61	19.06	12.47	13.10	14.02	8.06	7.73	11.71	36.50	10.66	11.06	6.06	5.17
49	E3_Ae	KnownBoundary	0	84.47	22.69	20.08	19.84	20.93	12.05	2.80	8.86	10.84	8.91	13.22	21.78	5.80	51.65	9.97	28.46	42.34	13.74	40.46	4.13	17.81	19.30	9.26	4.90	28.04	12.57	28.13	10.29	10.99
50	ER3k	ExonRegion	0	64.57	9.56	21.89	8.78	17.48	15.89	8.46	6.00	8.58	12.21	6.25	21.80	8.23	46.22	7.75	21.77	30.70	15.08	13.31	10.81	17.77	11.44	9.00	7.43	30.97	13.87	2.85	6.74	11.94
51	E3_Dg	KnownBoundary	0	92.43	35.10	17.22	9.92	27.71	22.56	7.04	11.10	8.44	15.18	3.10	34.52	20.60	32.39	16.74	17.82	54.74	32.36	24.28	13.98	37.10	19.11	9.21	10.95	29.74	17.25	2.09	12.99	13.07
52	ER3l	ExonRegion	0	69.25	21.79	18.12	12.39	26.89	24.32	11.09	5.47	13.42	14.08	14.99	34.28	12.39	40.60	12.74	19.24	45.04	18.24	18.15	9.75	23.38	11.22	12.05	15.50	41.32	20.25	12.93	11.73	14.60
53	E3_Af	KnownBoundary	0	54.56	9.70	7.57	20.71	20.78	14.00	7.15	4.93	9.96	7.23	14.49	15.03	5.45	20.34	8.37	10.40	26.29	4.62	0.00	12.24	13.40	4.96	2.51	5.98	20.57	17.77	0.00	5.84	1.65
54	E3_Ag	KnownBoundary	0	247.15	141.94	249.85	279.54	199.98	215.05	155.74	73.75	57.19	161.30	228.97	182.83	169.03	294.31	44.85	203.87	279.00	133.95	48.33	123.39	138.38	176.04	168.04	109.52	159.19	134.66	152.72	50.82	81.91
55	ER3m	ExonRegion	0	461.03	178.48	405.82	411.34	312.18	363.72	239.54	111.69	104.39	265.53	384.40	308.29	283.83	493.06	86.34	303.69	419.55	226.29	110.13	221.11	250.21	278.37	272.44	187.15	298.61	231.29	220.70	74.98	136.01
56	ER3n	ExonRegion	0	444.88	244.33	380.54	387.50	303.78	400.07	304.05	125.69	137.15	328.80	346.91	327.83	374.42	544.42	96.02	310.98	433.29	272.99	140.06	248.71	289.86	291.48	315.39	215.77	306.26	283.93	199.80	90.93	145.60
57	E3_Dh	NovelBoundary	0	34.21	13.86	7.32	10.78	19.31	20.57	7.84	2.29	5.60	3.36	2.69	30.48	7.39	18.77	0.00	6.73	16.39	13.87	0.00	2.98	9.47	4.23	4.83	8.31	26.56	16.31	2.53	2.29	9.81
58	E3h_E4a	KnownJunction	0	442.15	232.39	375.07	288.38	264.83	361.96	280.01	163.63	151.87	339.90	336.24	278.52	362.33	581.61	80.92	339.88	409.76	253.78	169.94	283.58	299.22	271.58	241.52	222.63	339.41	206.12	223.29	70.27	172.03
59	I3	Intron	0	39.91	17.00	10.43	11.36	19.83	8.98	5.19	1.46	8.76	6.15	7.19	15.20	8.47	16.22	11.18	12.61	16.56	11.70	6.33	8.62	9.46	4.82	7.88	12.57	27.46	8.25	7.98	4.20	9.13
60	I3_AR1	ActiveIntronRegion	0	40.06	17.07	10.47	11.40	19.91	9.02	5.21	1.46	8.80	6.17	7.22	15.26	8.50	16.29	11.22	12.66	16.62	11.75	6.35	8.66	9.50	4.84	7.91	12.62	27.57	8.28	8.01	4.21	9.16
61	E4_Aa	NovelBoundary	0	54.21	8.34	13.43	10.35	12.97	19.61	7.04	2.04	5.09	9.31	17.68	23.37	3.06	20.89	9.97	9.64	13.12	23.89	8.09	4.05	5.74	6.22	3.94	16.27	30.46	12.02	29.52	6.20	3.27
62	ER4a	ExonRegion	0	459.91	283.70	414.21	437.51	310.07	377.13	248.87	132.96	147.65	334.50	328.64	267.44	350.54	551.82	52.04	325.79	406.92	262.60	125.62	231.09	280.68	266.54	254.79	215.69	368.35	250.08	188.96	64.29	180.01
63	E4_Da	KnownBoundary	0	477.02	250.52	430.18	471.29	328.64	338.06	234.87	104.56	150.53	280.30	299.77	265.15	290.07	512.22	53.02	285.34	429.30	252.49	105.20	188.06	244.27	271.62	251.07	213.48	359.00	312.20	149.29	65.42	175.40
64	ER4b	ExonRegion	0	449.95	284.70	346.18	310.09	342.72	310.59	252.94	120.01	147.57	315.18	335.59	350.32	325.87	550.72	97.00	319.21	466.37	279.50	146.36	203.77	248.49	308.05	300.14	237.28	342.88	257.76	195.50	87.99	154.16
65	E4_Db	KnownBoundary	0	436.49	287.07	259.19	342.52	369.17	275.59	215.64	151.69	166.85	322.40	331.97	344.03	350.70	560.41	114.21	310.81	480.82	280.62	113.29	176.73	196.62	333.66	312.54	242.97	310.73	249.85	235.81	110.62	144.40
66	E4b_E4b	KnownJunction	0	3.01	4.75	1.92	18.98	0.00	0.00	0.00	0.00	2.38	0.00	0.00	0.00	0.00	1.13	0.00	0.00	3.94	0.00	0.00	0.00	5.01	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER4c	ExonRegion	0	396.66	354.34	298.55	388.35	348.61	319.32	217.82	96.82	243.99	331.78	313.79	285.20	351.18	466.27	110.97	320.70	417.93	249.66	188.26	225.80	237.95	270.40	286.82	319.01	418.94	217.26	230.39	98.05	163.27
68	E4_Dc	KnownBoundary	0	123.04	47.31	242.97	122.30	93.58	107.97	78.38	11.15	99.46	82.61	103.35	157.23	253.26	270.98	0.00	111.46	380.45	36.99	48.55	62.11	68.31	72.15	63.83	96.18	117.75	36.95	35.83	15.64	193.26
69	ER4d	ExonRegion	0	246.73	415.26	143.38	323.97	323.82	341.79	218.36	52.10	342.01	288.22	285.67	199.34	338.22	332.92	151.17	256.41	298.65	167.78	220.64	195.39	263.26	151.80	192.71	335.60	320.38	105.82	255.82	53.20	172.13
70	E4_Ab	KnownBoundary	0	5.78	9.21	0.00	0.00	6.78	0.00	0.00	2.09	11.39	0.00	0.00	2.95	4.30	2.13	0.00	0.00	5.11	0.00	8.09	0.00	3.89	0.00	0.00	6.04	1.52	0.00	0.00	0.00	4.09
71	ER4e	ExonRegion	0	4.01	2.28	3.09	1.08	7.67	2.06	5.56	1.08	9.51	4.71	1.48	1.81	2.57	3.59	1.17	4.00	11.28	1.70	2.12	1.04	2.27	1.24	1.08	2.56	3.08	0.98	1.15	2.48	0.94
72	IG37_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.82	1.35	0.00	0.76	0.00	0.00	0.00	0.00	0.81	0.00	0.00	2.18	0.00	1.02	0.00	1.46	0.65	0.00	0.00	0.00	0.00