Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 FLNA Gene 0 540.86 2415.91 735.62 2427.33 1400.88 1009.49 2252.55 2 369850 Transcript 1 9.19 120.20 17.24 255.64 23.41 35.25 7.36 3 344736 Transcript 1 14.70 102.25 50.25 310.82 18.83 106.40 75.88 4 360319 Transcript 0 0 0 0 0 0 0 0 5 369863 Transcript 0 0 0 0 0 0 0 0 6 369852 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 369854 Transcript 1 23.42 84.70 20.22 53.94 11.25 32.56 143.37 8 369856 Transcript 1 3.44 65.86 17.56 50.71 13.95 34.57 205.77 9 IG13_AR7 ActiveIntergenicRegion 0 1.04 1.00 1.13 6.14 33.03 1.01 0.56 10 ER1a ExonRegion 0 7.62 82.24 17.93 242.59 1.04 17.74 2.63 11 E1a_E2a KnownJunction 1 0.93 82.26 7.85 148.81 0.00 24.41 2.52 12 ER2a ExonRegion 0 19.03 196.11 25.93 375.53 69.19 63.60 16.94 13 E2_Ab KnownBoundary 0 47.70 293.64 57.97 572.03 26.42 105.89 35.27 14 ER2b ExonRegion 0 335.77 1857.07 399.65 1974.59 657.62 763.84 966.57 15 E2a_E3a KnownJunction 0 516.00 3786.21 658.26 3181.88 670.93 1427.68 1478.04 16 ER3a ExonRegion 0 436.29 2516.47 566.32 2326.98 842.56 1080.97 1476.90 17 E3a_E4a KnownJunction 0 268.61 1575.24 410.62 1477.60 474.54 580.48 967.06 18 ER4a ExonRegion 0 285.07 1809.74 455.60 1757.81 663.80 733.05 1182.14 19 E4a_E5a KnownJunction 0 283.24 1927.46 487.20 1884.54 862.59 735.52 1212.31 20 ER5a ExonRegion 0 510.20 2135.11 666.38 2083.10 940.49 841.58 1474.02 21 E5a_E6a KnownJunction 0 602.07 2301.12 696.01 2245.15 1056.88 944.66 1564.36 22 E6_Aa NovelBoundary 1 227.97 22.28 257.00 7.83 3.27 10.99 5.62 23 ER6a ExonRegion 0 687.45 2514.28 785.79 2460.07 1311.58 930.46 1831.33 24 E6a_E7a KnownJunction 0 663.09 2716.36 791.93 2830.61 1057.20 1033.75 1848.68 25 ER7a ExonRegion 0 597.95 2477.55 741.52 2504.24 1002.27 862.17 1864.17 26 E7a_E8a KnownJunction 0 684.72 2431.03 770.15 2404.09 1036.11 831.22 2064.03 27 ER8a ExonRegion 0 527.55 2024.29 649.58 2002.13 1232.27 669.21 1800.36 28 E8a_E9a KnownJunction 0 243.27 1646.17 344.05 1628.09 786.75 536.37 1303.49 29 ER9a ExonRegion 0 216.53 1678.18 304.70 1598.69 719.43 498.71 1138.25 30 E9a_E10a KnownJunction 0 160.92 1317.75 252.37 1183.10 481.55 328.22 864.74 31 ER10a ExonRegion 0 218.41 1564.80 334.10 1523.95 634.64 483.12 1063.13 32 E10a_E11a KnownJunction 0 270.53 1759.08 411.47 1716.76 776.77 597.45 1208.45 33 ER11a ExonRegion 0 284.55 2055.30 473.26 1989.39 899.46 639.72 1493.51 34 E11a_E12a KnownJunction 0 295.46 2047.75 429.86 2149.84 901.50 636.44 1579.18 35 ER12a ExonRegion 0 348.43 2036.72 450.48 1998.60 932.84 652.70 1612.91 36 E12a_E13a KnownJunction 0 353.01 2198.16 502.20 2367.76 1158.52 682.83 1989.52 37 ER13a ExonRegion 0 382.81 2309.81 529.58 2358.14 1185.41 714.09 2054.13 38 E13a_E14a KnownJunction 0 350.10 2124.44 500.82 2202.26 873.38 678.14 1877.52 39 ER14a ExonRegion 0 445.72 2219.01 639.17 2250.08 1189.69 771.09 2018.83 40 E14a_E15a KnownJunction 0 651.83 2258.14 789.68 2337.50 1317.45 790.59 1974.73 41 ER15a ExonRegion 0 718.13 2356.14 851.38 2464.23 1432.12 849.69 2053.77 42 E15_Da NovelBoundary 1 233.99 11.01 252.04 2.71 0.97 1.29 4.13 43 E15a_E16a KnownJunction 0 1061.16 2544.44 1148.09 2677.06 1409.98 1004.43 2478.85 44 ER16a ExonRegion 0 880.72 2426.09 1024.61 2528.07 1327.68 984.60 2247.44 45 E16_Ab KnownBoundary 0 843.06 2216.63 951.56 2310.11 830.82 893.85 1944.69 46 ER16b ExonRegion 0 636.51 2094.60 712.25 2043.32 936.25 762.76 1571.17 47 E16a_E17a KnownJunction 0 525.23 1825.60 593.26 1738.87 921.45 624.94 1516.78 48 ER17a ExonRegion 0 612.86 2086.18 714.71 1965.50 1315.75 744.93 1906.42 49 E17a_E18a KnownJunction 0 531.79 2096.96 731.03 2024.38 1211.13 768.54 2069.23 50 ER18a ExonRegion 0 500.42 2346.17 684.15 2184.51 1329.12 780.76 2355.72 51 E18a_E19a KnownJunction 0 589.51 2699.18 794.00 2491.46 1708.77 871.37 2653.09 52 E18a_E21a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER19a ExonRegion 0 669.49 3211.93 961.51 2911.45 1912.68 1031.53 3051.19 54 E19a_E20a KnownJunction 0 684.59 3570.03 1008.86 3246.57 1601.55 1031.28 3025.32 55 ER20a ExonRegion 0 618.01 3476.64 959.09 3178.27 1749.61 1092.01 2997.29 56 E20a_E21a KnownJunction 0 615.76 2974.79 894.45 2794.53 1733.83 1001.45 2753.40 57 ER21a ExonRegion 0 399.79 2304.99 596.35 2111.98 1160.05 729.26 2001.45 58 E21a_E22a KnownJunction 0 305.86 1717.26 461.60 1616.53 668.74 494.00 1666.93 59 ER22a ExonRegion 0 232.34 1588.05 340.27 1506.18 562.31 490.62 1272.24 60 E22_Da KnownBoundary 0 229.95 1772.53 400.30 1665.99 697.03 501.99 1256.87 61 ER22b ExonRegion 0 320.98 1953.15 503.33 1858.20 823.94 654.70 1751.52 62 E22_Ab KnownBoundary 0 283.66 1822.63 474.24 1618.67 695.04 602.99 1334.24 63 ER22c ExonRegion 0 313.18 1977.41 449.51 1939.74 815.52 691.64 1488.69 64 E22b_E23a KnownJunction 0 388.49 1989.64 522.84 2072.04 1156.12 674.98 1690.56 65 ER23a ExonRegion 0 594.77 2550.80 752.78 2508.95 1476.26 928.59 2404.13 66 E23a_E24a KnownJunction 0 591.83 3098.51 751.41 2933.15 1510.54 1072.26 2336.11 67 ER24a ExonRegion 0 676.73 2736.79 817.61 2633.03 1529.04 982.23 2432.54 68 E24a_E25a KnownJunction 0 544.49 1945.77 684.23 2014.25 1173.99 772.15 1774.66 69 E25_Aa NovelBoundary 1 186.68 9.22 226.62 3.09 0.00 5.09 7.65 70 ER25a ExonRegion 0 484.06 2531.02 732.85 2428.00 1440.21 887.16 2246.00 71 E25a_E26a KnownJunction 0 551.34 2866.11 906.12 2723.77 1594.17 972.03 2590.29 72 ER26a ExonRegion 0 618.39 3335.05 1019.17 3371.10 1664.34 1224.77 3223.45 73 E26a_E27a KnownJunction 0 638.01 3387.39 1079.38 3428.22 1765.06 1312.36 3219.67 74 ER27a ExonRegion 0 701.77 3469.15 1144.96 3461.66 2187.92 1321.96 3553.01 75 E27a_E28a KnownJunction 0 647.05 3211.58 1086.96 3140.56 1860.83 1320.40 3159.61 76 ER28a ExonRegion 0 598.27 3074.73 881.96 2847.39 1680.73 1129.49 3204.14 77 E28a_E29a KnownJunction 0 633.47 3571.86 934.60 3379.15 2047.78 1310.24 4024.45 78 ER29a ExonRegion 0 625.30 3458.81 915.48 3390.71 2266.71 1280.39 4459.25 79 E29a_E30a KnownJunction 1 264.82 937.60 386.91 1456.36 166.81 498.58 2436.50 80 E29a_E31a KnownJunction 0 401.93 2144.91 478.81 1477.95 1947.32 589.14 1194.51 81 E30a_E31a KnownJunction 0 294.36 878.49 377.01 1264.29 93.41 457.18 1896.58 82 ER30a ExonRegion 0 374.23 1260.52 523.22 1897.05 165.21 650.34 3057.42 83 ER31a ExonRegion 0 844.90 3173.46 1103.46 3188.20 2028.04 1265.02 3832.11 84 E31a_E32a KnownJunction 0 833.95 2145.09 1023.53 2106.36 1777.14 945.04 2949.98 85 E31a_E33a KnownJunction 1 14.70 102.25 50.25 310.82 18.83 106.40 75.88 86 ER32a ExonRegion 0 670.89 2139.29 861.96 2044.03 1973.74 932.27 2686.69 87 E32a_E33a KnownJunction 0 522.18 1746.95 790.30 1730.39 1515.68 710.46 2160.28 88 ER33a ExonRegion 0 602.27 2570.32 918.13 2671.14 1491.90 1092.47 3097.64 89 E33a_E34a KnownJunction 0 521.86 3106.76 789.35 2978.59 1694.48 1258.25 3091.77 90 E34_Aa NovelBoundary 1 215.88 5.99 304.12 7.86 0.00 7.42 9.89 91 ER34a ExonRegion 0 697.51 3313.88 1015.98 3206.00 2122.51 1319.87 4009.71 92 E34a_E35a KnownJunction 0 783.58 3103.23 1078.72 3001.75 2824.34 1122.53 3905.84 93 ER35a ExonRegion 0 840.57 3344.68 1127.51 3366.01 2654.40 1339.91 4340.49 94 E35a_E36a KnownJunction 0 925.61 2891.99 1090.55 3170.93 1886.76 1201.54 3557.82 95 E35a_E37a KnownJunction 1 3.44 65.86 17.56 50.71 13.95 34.57 205.77 96 ER36a ExonRegion 0 839.95 3040.36 1029.86 3216.68 2172.11 1250.98 3405.74 97 E36a_E37a KnownJunction 0 776.25 2618.26 928.80 2927.87 2195.88 1058.62 3338.78 98 ER37a ExonRegion 0 639.04 2347.63 796.74 2488.81 1694.11 998.94 2462.95 99 E37a_E38a KnownJunction 0 601.41 2342.60 972.58 2674.30 1453.90 1114.33 2545.59 100 ER38a ExonRegion 0 654.17 2558.03 981.18 2764.51 1760.18 1169.07 2479.95 101 E38a_E39a KnownJunction 0 717.75 2682.92 961.85 2918.31 1601.80 1192.70 2524.62 102 ER39a ExonRegion 0 921.72 2863.91 1183.78 3051.90 2608.31 1306.67 3174.96 103 E39a_E40a KnownJunction 0 844.74 2513.20 1101.66 2838.74 2556.86 1246.51 2660.69 104 E39a_E41a KnownJunction 1 23.42 84.70 20.22 53.94 11.25 32.56 143.37 105 ER40a ExonRegion 0 904.81 2850.81 1098.74 3068.12 1931.23 1418.87 2915.18 106 E40a_E41a KnownJunction 0 1051.58 2959.98 1174.78 3111.87 2505.41 1473.45 2743.85 107 ER41a ExonRegion 0 740.26 2551.05 1003.65 2690.35 1829.86 1283.35 2423.81 108 E41a_E42a KnownJunction 0 1009.42 2333.80 1257.09 2581.70 2037.66 1285.56 2575.41 109 ER42a ExonRegion 0 873.47 2734.29 1186.78 2883.35 1691.42 1397.05 2552.30 110 E42a_E43a KnownJunction 0 816.49 2953.99 1202.88 3238.98 1632.86 1476.21 3009.20 111 E43_Aa NovelBoundary 1 371.65 95.10 503.92 35.46 16.21 38.38 113.53 112 ER43a ExonRegion 0 710.45 2747.97 964.97 2798.27 1788.42 1329.47 2279.75 113 E43a_E44a KnownJunction 0 676.93 2426.72 959.78 2654.52 1969.10 1215.72 2422.91 114 ER44a ExonRegion 0 838.73 2981.01 1158.62 3104.83 2386.82 1672.73 3077.11 115 E44a_E45a KnownJunction 0 1169.21 3332.72 1518.04 3623.54 3152.06 1960.19 3743.84 116 ER45a ExonRegion 0 1014.67 3442.86 1340.37 3620.72 2756.58 2151.22 3709.25 117 E45a_E46a KnownJunction 0 928.93 3525.97 1185.67 3857.80 3152.94 2071.03 3919.67 118 ER46a ExonRegion 0 641.50 2892.59 893.01 3013.55 1958.17 1734.69 2793.68 119 E46a_E47a KnownJunction 0 493.89 2318.51 672.10 2497.47 1222.12 1449.73 2138.19 120 ER47a ExonRegion 0 437.73 2533.74 697.74 2672.58 1534.18 1607.11 2129.74 121 E47a_E48a KnownJunction 0 637.92 3172.07 960.50 3494.10 2026.30 1987.52 2798.54 122 ER48a ExonRegion 0 318.54 1882.93 424.55 2001.16 894.81 1195.88 1588.00 123 E48_Da KnownBoundary 0 79.19 567.02 70.41 661.24 131.06 354.94 310.72 124 ER48b ExonRegion 0 75.86 465.87 79.63 566.25 207.40 370.18 302.54 125 IG12_AR8 ActiveIntergenicRegion 0 0.00 2.43 0.68 4.99 0.00 12.26 0.67 126 IG12_SR4 SilentIntergenicRegion 0 2.41 2.97 2.06 5.20 0.40 14.38 0.90