Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FMR1	Gene	0	100.70	84.24	142.54	111.43	165.25	104.05	78.29
2	370477	Transcript	0	2.55	5.10	6.47	5.66	9.06	3.27	3.16
3	218200	Transcript	0	0	0	0	0	0	0	0
4	370475	Transcript	0	0	0	0	0	0	0	0
5	334557	Transcript	0	6.17	5.26	8.68	4.04	3.60	4.89	1.29
6	370471	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	370470	Transcript	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	0.00	0.00	0.00	2.03	0.00	0.00	0.00
9	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	2.49	0.00	0.00	0.00
10	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	0.00	0.00	0.00	1.96	0.00	0.00	0.00
12	ER1c	ExonRegion	0	5.31	16.25	7.51	11.33	6.28	11.54	4.55
13	E1_Ad	KnownBoundary	0	22.45	56.96	33.41	42.59	40.09	38.65	21.21
14	ER1d	ExonRegion	0	31.91	59.43	59.70	56.71	80.90	46.34	37.28
15	E1a_E2a	KnownJunction	0	37.87	64.68	79.02	62.99	85.78	49.26	47.29
16	ER2a	ExonRegion	0	44.09	77.89	89.12	73.29	97.58	78.26	52.36
17	E2a_E3a	KnownJunction	0	47.40	79.39	80.95	76.04	111.18	91.63	49.83
18	E3_Aa	NovelBoundary	1	27.40	9.72	31.36	7.91	16.83	1.66	2.57
19	ER3a	ExonRegion	0	106.42	107.86	169.50	135.93	158.58	123.84	82.41
20	E3a_E4a	KnownJunction	0	148.99	115.99	237.25	168.15	226.79	168.11	124.07
21	I3_AR1	ActiveIntronRegion	1	18.32	8.88	28.98	6.58	5.84	6.36	2.26
22	ER4a	ExonRegion	0	186.94	188.20	256.71	212.43	308.17	206.58	128.96
23	E4a_E5a	KnownJunction	0	239.52	206.55	251.51	226.64	338.14	163.61	122.52
24	ER5a	ExonRegion	0	242.61	214.61	281.44	283.66	350.24	195.45	124.65
25	E5a_E6a	KnownJunction	0	292.37	178.57	290.65	206.05	389.80	156.43	126.99
26	ER6a	ExonRegion	0	245.34	163.94	279.69	236.92	357.45	153.85	126.73
27	E6a_E7a	KnownJunction	0	175.78	174.99	248.85	244.36	342.06	153.48	118.97
28	E7_Aa	NovelBoundary	1	67.81	0.00	98.95	0.00	97.33	0.00	0.00
29	ER7a	ExonRegion	0	155.88	168.01	229.34	207.10	290.79	137.41	122.26
30	E7a_E8a	KnownJunction	0	94.35	166.35	173.06	209.20	257.20	129.71	85.37
31	ER8a	ExonRegion	0	95.44	156.58	191.30	177.89	207.01	144.71	104.34
32	E8a_E9a	KnownJunction	0	130.20	126.44	178.26	162.98	184.98	122.10	79.84
33	ER9a	ExonRegion	0	163.06	141.11	228.98	179.89	250.72	130.86	91.47
34	E9a_E10a	KnownJunction	0	3.44	7.64	5.29	1.68	3.09	7.50	0.64
35	E9a_E11a	KnownJunction	0	174.03	129.02	272.69	186.14	284.10	160.83	103.46
36	E9a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER10a	ExonRegion	0	8.90	2.87	12.06	6.40	4.12	2.29	1.93
38	E11_Ab	NovelBoundary	0	102.26	74.66	164.64	83.85	125.73	71.42	55.79
39	ER11a	ExonRegion	0	177.51	133.63	276.86	188.65	300.57	153.78	111.02
40	ER11b	ExonRegion	0	306.11	178.97	339.43	266.79	350.21	186.92	148.50
41	E11a_E12a	KnownJunction	1	363.52	233.45	391.19	324.63	359.88	254.84	139.52
42	ER12a	ExonRegion	0	273.94	144.15	328.41	190.76	366.71	168.68	134.67
43	E12a_E13a	KnownJunction	1	19.71	2.31	24.31	13.17	25.20	8.84	10.69
44	E12a_E14a	KnownJunction	0	142.67	100.04	192.86	122.59	259.11	134.64	92.95
45	ER13a	ExonRegion	0	19.06	6.23	20.61	6.45	24.45	6.81	11.21
46	E13a_E14a	KnownJunction	0	19.31	9.14	24.10	2.76	29.85	10.53	12.43
47	ER14a	ExonRegion	0	135.46	105.04	197.45	156.00	250.22	127.46	126.64
48	E14a_E15a	KnownJunction	0	79.73	101.01	138.85	163.44	153.12	134.96	113.81
49	E14a_E16a	NovelJunction	0	0.70	16.18	2.83	17.56	0.00	8.82	0.00
50	ER15a	ExonRegion	0	101.36	127.78	163.74	162.15	205.55	146.59	129.69
51	E15a_E16a	KnownJunction	0	49.05	73.43	67.89	87.23	86.98	82.28	61.47
52	E15a_E16b	KnownJunction	0	5.09	10.19	12.93	9.29	18.12	6.54	6.32
53	E15a_E16c	KnownJunction	0	4.84	10.14	16.64	14.49	34.07	16.51	15.68
54	I15	Intron	0	27.02	14.92	41.35	17.46	23.43	16.03	8.71
55	I15_AR1	ActiveIntronRegion	0	24.74	17.33	38.98	16.94	21.06	16.99	10.06
56	I15_AR2	ActiveIntronRegion	0	32.15	32.19	56.22	23.07	17.55	23.50	13.38
57	I15_SR1	SilentIntronRegion	0	27.07	20.21	45.41	20.11	27.71	20.76	10.35
58	I15_AR3	ActiveIntronRegion	0	35.20	11.41	47.68	20.66	32.61	16.98	8.73
59	I15_AR4	ActiveIntronRegion	1	26.37	12.00	51.10	20.95	28.15	9.42	3.62
60	I15_SR2	SilentIntronRegion	1	36.65	15.79	62.53	21.77	24.98	10.19	4.93
61	I15_AR5	ActiveIntronRegion	1	25.56	10.67	41.06	13.93	15.85	10.87	4.64
62	ER16a	ExonRegion	0	51.71	78.08	76.45	108.05	107.27	90.96	75.45
63	E16_Ab	KnownBoundary	0	53.11	71.85	75.10	113.65	110.47	76.35	77.26
64	ER16b	ExonRegion	0	52.59	89.96	89.22	129.65	115.95	121.66	86.47
65	E16_Ac	KnownBoundary	1	36.58	75.90	65.10	107.47	110.38	120.97	63.79
66	ER16c	ExonRegion	0	54.34	113.17	102.24	145.08	153.47	146.26	89.18
67	E16a_E17a	KnownJunction	0	74.69	113.18	133.14	163.25	188.89	151.69	112.01
68	ER17a	ExonRegion	0	64.51	113.51	127.02	142.60	166.14	127.61	110.81
69	E17a_E18a	KnownJunction	0	32.91	69.88	49.98	78.46	87.30	60.17	63.24
70	E17a_E18b	KnownJunction	0	17.24	24.80	39.95	33.02	68.24	39.34	33.82
71	ER18a	ExonRegion	0	42.04	83.80	61.58	99.49	98.72	66.39	63.52
72	E18_Ab	KnownBoundary	0	45.26	84.94	71.88	115.30	101.66	77.93	60.68
73	ER18b	ExonRegion	0	88.65	104.00	146.11	141.32	172.08	128.14	105.06
74	E18_Da	KnownBoundary	0	105.63	101.88	153.20	106.93	202.29	107.31	87.19
75	ER18c	ExonRegion	0	106.43	63.54	152.19	87.62	161.30	96.94	73.07
76	E18_Db	KnownBoundary	0	94.05	72.59	168.28	104.49	163.72	124.08	108.90
77	ER18d	ExonRegion	0	80.51	65.67	121.86	97.42	160.66	122.73	91.13
78	E18_Dc	KnownBoundary	1	57.35	35.28	69.31	48.79	140.18	91.84	55.51
79	ER18e	ExonRegion	0	41.56	46.95	62.80	63.30	92.78	80.67	51.51