Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAMLD1	Gene	0	24.13	150.98	33.12	420.34	1.03	362.17	20.34
2	370401	Transcript	0	0.49	13.63	1.90	38.51	0.00	43.45	1.89
3	358892	Transcript	0	0.16	0.00	0.15	0.00	4.04	0.39	0.00
4	262858	Transcript	0	0.19	12.15	1.19	38.03	0.20	28.81	0.67
5	IG23_AR3	ActiveIntergenicRegion	0	0.41	8.27	0.49	25.29	0.00	5.80	0.20
6	ER1a	ExonRegion	0	0.47	13.17	0.46	28.39	0.00	29.01	0.57
7	E1a_E3b	KnownJunction	0	0.98	27.72	5.23	87.15	0.00	101.36	5.09
8	E1a_E4a	NovelJunction	0	1.65	4.31	0.00	14.01	0.00	9.57	0.00
9	E1a_E5a	NovelJunction	0	0.00	2.94	0.89	3.98	0.00	13.24	0.00
10	I1_AR1	ActiveIntronRegion	0	13.77	4.04	13.43	4.07	0.00	2.89	1.08
11	E2_Aa	NovelBoundary	0	135.47	153.79	117.78	89.92	40.76	80.13	122.00
12	ER2a	ExonRegion	0	0.32	0.00	0.29	0.00	8.08	0.78	0.00
13	E2_Da	NovelBoundary	0	82.31	106.66	85.93	80.24	141.89	77.21	66.93
14	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER3a	ExonRegion	0	0.19	12.15	1.19	38.03	0.20	28.81	0.67
16	ER3b	ExonRegion	0	9.29	100.11	17.34	241.84	0.26	207.33	6.25
17	E3a_E4a	KnownJunction	0	11.58	90.77	18.97	223.18	0.00	202.02	6.42
18	E3a_E5a	NovelJunction	0	1.72	28.27	7.95	88.07	0.00	112.99	1.68
19	ER4a	ExonRegion	0	11.82	121.50	25.63	300.30	0.00	267.55	11.30
20	E4a_E5a	KnownJunction	1	10.90	153.14	32.91	368.01	0.00	299.46	14.12
21	ER5a	ExonRegion	0	17.73	218.04	43.52	508.94	0.69	483.06	17.08
22	E5_Da	KnownBoundary	0	20.43	298.97	44.61	579.75	0.00	504.24	20.94
23	ER5b	ExonRegion	0	23.14	218.18	40.50	586.05	0.60	455.54	23.48
24	E5b_E6a	KnownJunction	0	32.03	147.80	17.83	392.60	0.88	246.21	17.53
25	E5b_E7a	NovelJunction	0	0.62	25.22	7.19	102.13	0.00	68.85	7.07
26	E5b_E8a	NovelJunction	1	7.61	17.44	13.41	98.23	0.00	34.73	2.64
27	ER6a	ExonRegion	0	21.92	124.60	21.86	308.62	1.03	207.51	16.87
28	E6a_E7a	KnownJunction	0	16.02	68.80	17.20	201.04	0.00	152.22	8.91
29	E6a_E8a	NovelJunction	0	4.36	14.24	0.00	24.33	0.00	11.87	0.87
30	E7_Aa	NovelBoundary	1	7.43	36.62	2.40	58.65	0.00	44.62	10.82
31	ER7a	ExonRegion	0	11.43	102.22	16.81	298.20	0.34	250.59	15.19
32	E7a_E8a	KnownJunction	0	8.73	122.56	21.15	367.00	0.00	352.26	13.59
33	I7_SR3	SilentIntronRegion	1	6.16	13.56	3.74	17.72	0.24	14.02	8.24
34	I7_SR5	SilentIntronRegion	1	5.65	17.27	4.76	30.18	0.61	11.46	8.44
35	I7_AR5	ActiveIntronRegion	1	10.47	16.82	6.68	15.43	0.00	15.79	12.49
36	E8_Aa	NovelBoundary	0	17.02	21.33	11.47	30.29	0.00	29.16	11.41
37	ER8a	ExonRegion	0	20.56	185.22	37.69	509.22	0.20	469.37	31.23
38	E8a_E9a	KnownJunction	0	25.90	212.67	48.64	645.01	1.18	531.81	36.55
39	ER9a	ExonRegion	0	32.77	131.66	36.16	397.99	1.30	374.36	23.61
40	ER9b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00