Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ATG4A Gene 0 46.51 37.69 29.57 30.52 15.18 30.82 63.85 2 372254 Transcript 0 0 0 0 0 0 0 0 3 343524 Transcript 0 0.35 0.00 0.00 0.00 0.00 0.00 0.00 4 345734 Transcript 0 0 0 0 0 0 0 0 5 394892 Transcript 0 0 0 0 0 0 0 0 6 372246 Transcript 0 0 0 0 0 0 0 0 7 372232 Transcript 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 1 24.72 6.29 9.23 6.55 9.85 11.20 12.62 9 E1a_E2a KnownJunction 1 140.51 34.05 50.77 37.20 48.02 38.06 63.96 10 ER2a ExonRegion 0 67.91 41.89 29.39 28.05 10.72 28.45 56.97 11 E2a_E3a KnownJunction 0 35.42 47.74 23.62 23.70 1.11 23.34 43.07 12 E3_Aa NovelBoundary 1 25.45 0.00 13.35 0.00 0.00 0.00 0.00 13 ER3a ExonRegion 0 102.19 35.60 47.58 29.04 13.57 37.05 85.06 14 E3a_E4a KnownJunction 0 111.51 31.00 36.64 41.72 40.23 39.85 95.17 15 ER4a ExonRegion 0 42.75 38.70 29.75 31.68 24.10 39.93 67.84 16 E4a_E5a KnownJunction 0 23.75 41.96 39.33 33.11 10.03 61.85 53.51 17 ER5a ExonRegion 0 38.26 57.57 35.79 34.23 13.86 38.53 70.59 18 E5a_E6a KnownJunction 0 38.45 56.12 33.74 28.96 11.73 33.45 104.72 19 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER6a ExonRegion 1 37.80 57.45 46.10 41.54 17.28 41.33 112.90 21 E6a_E7a KnownJunction 0 47.23 60.95 52.98 25.30 19.66 41.14 91.92 22 ER7a ExonRegion 0 46.64 56.70 40.47 34.84 20.42 36.23 90.44 23 E7a_E8a KnownJunction 0 41.12 52.78 28.42 44.70 18.26 35.48 108.49 24 ER8a ExonRegion 0 46.66 51.08 34.55 33.62 20.82 37.64 101.90 25 E8_Da KnownBoundary 0 67.03 54.64 33.80 42.70 26.79 39.80 92.09 26 E8a_E10a KnownJunction 0 1.87 0.00 0.80 0.00 0.00 0.00 0.89 27 ER8b ExonRegion 0 57.15 48.28 29.17 45.83 21.22 35.84 97.75 28 E8b_E9a KnownJunction 0 44.86 57.48 23.16 59.28 20.26 42.10 89.84 29 E8b_E10a KnownJunction 0 0.70 0.00 0.00 0.00 0.00 0.00 0.00 30 ER9a ExonRegion 0 69.51 64.05 34.52 41.86 21.51 37.65 101.24 31 E9a_E10a KnownJunction 0 91.48 52.73 32.86 38.52 30.43 28.46 101.91 32 ER10a ExonRegion 0 59.47 47.01 31.03 40.42 19.06 35.95 91.20 33 E10a_E11a KnownJunction 0 47.23 34.70 26.82 20.62 16.41 19.86 50.32 34 ER11a ExonRegion 0 54.61 39.02 28.41 33.19 21.30 28.59 63.90 35 E11a_E12a KnownJunction 0 53.66 44.45 27.91 33.32 20.45 34.36 78.41 36 ER12a ExonRegion 0 42.99 49.13 34.92 36.88 19.53 36.29 77.45 37 E12a_E13a KnownJunction 0 43.71 32.47 31.67 36.90 17.20 30.47 50.99 38 ER13a ExonRegion 0 40.06 29.65 26.84 27.43 12.26 27.58 48.32