Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CASK	Gene	0	91.26	49.89	136.51	55.37	207.92	27.42	168.89
2	378154	Transcript	0	3.56	1.45	4.44	1.21	3.99	0.55	2.05
3	378163	Transcript	0	0	0	0	0	0	0	0
4	378158	Transcript	0	0	0	0	0	0	0	0
5	378179	Transcript	0	58.91	41.43	119.44	51.34	181.68	29.95	171.29
6	378166	Transcript	0	0	0	0	0	0	0	0
7	361962	Transcript	0	0	0	0	0	0	0	0
8	318588	Transcript	0	0	0	0	0	0	0	0
9	378168	Transcript	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	0.00	3.53	0.00	3.81	0.32	0.46	0.36
11	E1_Ab	KnownBoundary	0	0.97	4.26	0.00	6.64	0.97	1.63	3.21
12	ER1b	ExonRegion	0	20.95	23.22	16.23	17.02	21.13	12.37	20.80
13	E1_Ac	KnownBoundary	0	46.90	21.44	30.81	30.04	60.95	16.64	45.53
14	E1_Ad	KnownBoundary	0	82.45	61.63	84.58	42.02	128.22	19.27	87.39
15	ER1c	ExonRegion	0	112.65	87.11	106.15	71.58	167.07	34.33	130.33
16	ER1d	ExonRegion	0	145.20	123.36	166.97	98.12	223.89	44.75	184.39
17	E1a_E2a	KnownJunction	0	169.20	140.84	201.89	112.02	210.77	48.94	204.67
18	ER2a	ExonRegion	0	206.66	141.28	226.44	122.89	205.19	61.15	213.89
19	E2a_E3a	KnownJunction	0	167.17	134.61	235.57	103.84	202.17	50.01	244.81
20	E2a_E4a	NovelJunction	1	0.75	12.19	2.67	0.00	2.95	3.78	0.83
21	ER3a	ExonRegion	0	176.49	124.89	250.46	110.30	281.45	48.10	277.59
22	E3a_E4a	KnownJunction	0	178.01	102.04	240.16	74.93	232.65	48.78	274.05
23	ER4a	ExonRegion	0	127.09	88.25	199.44	83.48	194.75	41.65	230.54
24	E4a_E5a	KnownJunction	0	81.83	76.95	162.66	72.33	188.20	38.14	183.59
25	I4_AR2	ActiveIntronRegion	0	8.13	10.02	10.74	7.54	3.37	10.83	11.71
26	I4_SR2	SilentIntronRegion	0	6.92	11.54	14.06	11.85	1.62	11.03	11.81
27	ER5a	ExonRegion	0	99.01	69.81	186.57	78.80	213.18	35.05	228.56
28	E5a_E6a	KnownJunction	0	121.90	82.94	218.98	82.33	270.92	45.32	301.09
29	ER6a	ExonRegion	0	120.56	67.38	198.91	70.50	201.68	34.22	221.63
30	E6a_E7a	KnownJunction	0	139.58	57.64	178.98	69.22	210.70	41.03	169.07
31	ER7a	ExonRegion	0	158.77	83.44	218.18	80.21	238.76	28.57	223.38
32	E7a_E8a	KnownJunction	0	169.69	84.44	190.97	73.31	214.05	31.01	199.05
33	ER8a	ExonRegion	0	123.29	79.01	184.99	80.39	228.50	28.44	245.85
34	E8a_E9a	KnownJunction	0	83.35	67.78	160.89	52.15	223.08	25.59	206.32
35	ER9a	ExonRegion	0	92.58	70.30	182.34	74.00	215.44	35.64	225.75
36	E9a_E10a	KnownJunction	0	107.72	72.59	220.40	87.72	259.67	32.48	258.17
37	ER10a	ExonRegion	0	113.57	64.24	202.54	75.14	274.14	38.91	227.74
38	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E10a_E13a	KnownJunction	0	81.28	67.60	182.95	73.47	272.95	37.14	198.95
41	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.09	0.00	0.00
45	ER13a	ExonRegion	0	104.93	71.64	206.98	67.91	287.15	34.50	254.39
46	E13a_E14a	KnownJunction	0	121.44	86.75	188.73	62.20	360.68	37.25	222.05
47	ER14a	ExonRegion	0	103.79	85.82	185.07	72.29	304.03	40.27	283.50
48	E14a_E15a	KnownJunction	0	100.11	82.47	184.23	82.65	292.63	37.25	284.49
49	ER15a	ExonRegion	0	95.44	76.36	191.80	77.48	318.99	35.36	282.15
50	E15a_E16a	KnownJunction	0	100.66	63.39	171.55	69.33	304.87	27.09	239.06
51	ER16a	ExonRegion	0	101.07	63.94	177.85	75.11	305.70	28.33	268.36
52	E16a_E17a	KnownJunction	0	116.51	69.04	178.54	73.69	383.39	27.12	278.07
53	ER17a	ExonRegion	0	134.19	71.20	199.54	84.27	422.72	38.18	311.73
54	E17a_E18a	KnownJunction	0	139.16	69.88	207.57	89.37	412.99	31.57	291.96
55	ER18a	ExonRegion	0	116.78	62.27	189.75	78.07	361.00	30.74	289.79
56	E18a_E19a	KnownJunction	0	101.68	52.81	153.29	72.06	323.43	35.83	266.97
57	ER19a	ExonRegion	0	111.46	52.50	168.45	72.38	361.73	33.62	246.66
58	E19_Da	KnownBoundary	0	9.25	1.63	6.78	1.68	3.53	1.53	1.59
59	E19a_E20a	KnownJunction	1	49.49	26.82	79.76	33.21	285.00	11.12	28.83
60	E19a_E21a	KnownJunction	1	36.53	15.26	55.93	29.20	90.41	22.75	143.63
61	E19a_E22a	NovelJunction	1	41.81	22.25	29.47	22.21	7.26	2.87	95.62
62	ER19b	ExonRegion	0	3.56	1.45	4.44	1.21	3.99	0.55	2.05
63	ER20a	ExonRegion	1	49.65	27.03	68.36	33.65	307.88	8.53	29.73
64	E20a_E21a	KnownJunction	1	10.87	2.65	24.96	10.59	337.93	3.11	11.52
65	E20a_E22a	KnownJunction	1	41.01	25.82	45.27	25.55	54.87	4.13	18.96
66	ER21a	ExonRegion	0	42.24	22.17	93.61	43.16	359.35	37.26	162.05
67	E21a_E22a	KnownJunction	1	22.15	17.29	63.40	25.14	285.95	34.73	99.45
68	ER22a	ExonRegion	0	126.47	61.16	174.82	78.37	358.71	38.58	223.91
69	E22a_E23a	KnownJunction	0	142.58	56.93	171.31	80.43	350.06	31.06	225.00
70	ER23a	ExonRegion	0	203.88	65.65	238.03	82.16	462.39	31.16	282.53
71	E23a_E24a	KnownJunction	0	213.73	68.78	274.63	99.56	382.98	39.58	351.95
72	E23a_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E24_Ab	NovelBoundary	0	134.75	63.45	178.95	74.31	256.81	29.53	223.05
74	ER24a	ExonRegion	0	216.60	78.51	276.16	105.45	400.62	43.52	350.54
75	ER24b	ExonRegion	0	190.84	79.21	241.48	92.29	389.65	43.91	304.12
76	E24a_E25a	KnownJunction	0	183.17	64.23	216.32	75.12	440.56	41.78	260.67
77	ER25a	ExonRegion	0	182.21	62.90	235.71	76.25	470.27	56.17	317.82
78	E25a_E26a	KnownJunction	0	127.69	59.48	190.87	77.53	392.31	56.82	283.15
79	ER26a	ExonRegion	0	87.12	45.43	142.74	63.98	309.35	43.49	245.46
80	E26a_E27a	KnownJunction	0	86.02	53.51	131.85	68.05	270.46	27.23	206.13
81	ER27a	ExonRegion	0	93.23	55.35	143.06	73.32	281.67	36.06	228.88
82	E27a_E28a	KnownJunction	0	85.42	52.75	155.23	69.62	299.73	50.65	236.34
83	ER28a	ExonRegion	0	71.66	32.09	128.37	43.28	166.83	24.93	141.20
84	E28_Da	KnownBoundary	0	47.30	21.75	64.32	40.07	82.41	20.56	98.27
85	ER28b	ExonRegion	0	75.85	27.34	77.60	32.77	108.74	16.63	81.33
86	E28_Db	KnownBoundary	1	69.95	11.69	74.12	31.32	80.32	9.73	44.60
87	ER28c	ExonRegion	0	32.20	3.55	32.88	10.97	62.19	3.88	22.54
88	IG21_SR3	SilentIntergenicRegion	0	11.45	1.47	14.28	5.80	20.09	0.32	7.46
89	IG21_AR2	ActiveIntergenicRegion	0	22.27	10.64	33.67	15.04	38.81	8.62	36.91