Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TFE3	Gene	0	81.78	347.42	173.39	614.99	139.96	641.55	126.31
2	336239	Transcript	0	35.46	148.92	75.09	283.24	46.53	285.72	50.48
3	315869	Transcript	0	3.18	51.90	5.24	85.29	8.93	87.75	2.87
4	ER1a	ExonRegion	0	52.43	200.85	104.96	326.62	50.96	383.51	47.83
5	E1a_E2a	KnownJunction	0	112.77	425.78	245.33	627.10	108.07	756.88	121.29
6	E2_Aa	NovelBoundary	1	34.38	2.15	91.27	9.73	1.04	13.37	0.00
7	ER2a	ExonRegion	0	106.11	491.35	252.92	814.07	146.82	950.55	146.40
8	E2a_E3a	KnownJunction	0	91.18	488.18	242.14	881.84	111.71	1065.45	114.87
9	ER3a	ExonRegion	0	85.24	468.31	181.75	787.46	113.12	972.25	141.34
10	E3a_E4a	KnownJunction	0	115.11	437.29	218.98	731.95	132.92	895.35	157.34
11	ER4a	ExonRegion	0	111.43	435.05	196.25	731.05	167.12	811.67	156.69
12	E4a_E5a	KnownJunction	0	151.53	493.04	254.28	928.36	250.65	869.20	226.08
13	ER5a	ExonRegion	0	159.53	575.90	310.70	1018.93	273.72	990.10	261.97
14	E5a_E6a	KnownJunction	0	129.08	530.84	262.62	921.29	191.13	873.73	260.44
15	I5	Intron	0	24.30	27.08	23.27	31.40	21.89	32.89	4.08
16	I5_SR2	SilentIntronRegion	0	29.71	26.38	28.32	37.53	29.89	34.30	3.96
17	I5_AR5	ActiveIntronRegion	1	54.05	65.40	55.03	87.75	46.68	100.22	9.18
18	I5_SR3	SilentIntronRegion	0	33.10	55.10	32.16	44.90	27.04	62.01	8.29
19	ER6a	ExonRegion	0	145.65	659.88	307.79	1163.71	250.19	1154.44	269.90
20	E6a_E7a	KnownJunction	0	181.87	661.86	388.24	1166.68	302.87	1210.14	287.65
21	ER7a	ExonRegion	0	177.74	661.69	405.79	1246.37	373.98	1199.33	298.86
22	E7a_E8a	KnownJunction	0	154.80	607.66	340.49	1176.70	384.11	1141.48	253.75
23	ER8a	ExonRegion	0	153.98	586.02	357.81	1073.65	310.47	1043.84	239.15
24	E8a_E9a	KnownJunction	0	130.65	494.98	327.10	950.17	251.53	856.76	187.88
25	ER9a	ExonRegion	0	142.78	468.05	321.13	883.84	269.05	818.54	194.67
26	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E9a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER10a	ExonRegion	0	80.30	230.10	155.18	385.23	105.26	357.84	107.70
29	E10_Da	NovelBoundary	0	30.73	150.14	46.01	195.08	27.80	246.05	23.50
30	E10a_E11a	KnownJunction	0	21.46	141.05	41.54	209.28	0.00	241.55	20.65
31	E11_Aa	NovelBoundary	0	11.88	103.48	23.31	187.42	4.52	179.18	20.32
32	ER11a	ExonRegion	0	7.58	27.58	13.30	52.04	32.93	59.27	7.62
33	E11a_E12a	KnownJunction	0	30.56	211.93	51.81	394.04	0.00	418.83	47.97
34	ER12a	ExonRegion	0	8.44	27.01	17.72	66.40	34.95	74.33	4.59
35	E12_Da	NovelBoundary	0	24.80	72.04	34.60	185.52	53.02	158.36	24.61
36	E12a_E13a	KnownJunction	0	47.53	127.05	108.63	328.80	0.00	308.68	50.60
37	E13_Aa	NovelBoundary	0	12.95	83.65	19.24	224.07	72.25	230.13	28.32
38	ER13a	ExonRegion	0	87.84	426.65	212.54	830.11	199.12	825.24	164.74
39	E13_Da	NovelBoundary	0	156.02	494.80	309.55	1077.41	230.57	1078.13	229.25
40	I13	Intron	0	114.08	381.29	228.00	753.98	219.31	838.20	157.25
41	I13_AR1	ActiveIntronRegion	1	128.32	428.89	256.46	848.05	246.65	942.77	176.88
42	ER14a	ExonRegion	0	6.37	103.81	10.49	170.58	17.87	175.49	5.75