Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ACOT9	Gene	0	85.28	171.04	150.25	176.78	86.76	146.83	136.87
2	379295	Transcript	0	2.42	2.58	4.15	3.61	1.01	4.41	0.59
3	336430	Transcript	0	0	0	0	0	0	0	0
4	379303	Transcript	0	69.03	154.83	180.09	236.30	0.06	202.98	155.44
5	379297	Transcript	1	94.33	99.82	92.12	70.99	57.59	76.35	44.15
6	ER1a	ExonRegion	0	3.94	4.28	3.69	3.76	1.49	4.46	0.82
7	E1a_E2a	KnownJunction	1	3.40	4.02	6.34	0.00	1.18	8.66	0.00
8	ER2a	ExonRegion	0	4.76	6.14	7.74	8.63	2.93	11.45	2.46
9	E2a_E3a	KnownJunction	0	0.00	0.00	2.36	1.57	0.00	1.66	0.00
10	ER3a	ExonRegion	0	1.49	1.03	3.53	2.66	0.45	0.23	0.28
11	E3a_E5a	KnownJunction	0	0.95	0.00	1.28	5.04	0.00	0.00	0.00
12	ER4a	ExonRegion	0	42.94	107.34	67.11	137.91	51.80	99.81	76.53
13	E4a_E5a	KnownJunction	0	12.85	179.67	30.32	183.30	21.92	119.79	42.31
14	ER5a	ExonRegion	0	104.82	255.38	155.06	288.58	87.85	233.87	162.02
15	E5a_E6a	KnownJunction	0	76.31	144.41	182.55	191.26	0.00	219.22	152.92
16	E5a_E7a	KnownJunction	1	67.96	74.27	24.88	67.67	176.31	29.77	43.62
17	E6a_E7a	KnownJunction	0	45.18	125.34	127.22	217.08	0.00	133.62	110.21
18	ER6a	ExonRegion	0	85.61	194.74	230.51	300.56	0.18	256.10	203.20
19	ER7a	ExonRegion	0	153.62	353.76	262.41	394.72	227.80	292.91	256.07
20	E7a_E8a	KnownJunction	0	157.07	365.02	275.62	341.73	287.33	297.66	234.68
21	ER8a	ExonRegion	0	257.22	503.36	465.55	493.02	232.33	432.02	344.52
22	E8a_E9a	KnownJunction	0	228.00	440.73	413.52	351.34	293.95	346.92	277.97
23	ER9a	ExonRegion	0	302.93	519.77	560.20	465.31	319.10	438.52	364.05
24	E9a_E10a	KnownJunction	0	253.42	394.49	452.54	427.80	321.45	381.36	295.73
25	ER10a	ExonRegion	0	219.84	436.61	445.29	468.04	259.31	381.49	356.40
26	E10a_E11a	KnownJunction	0	190.82	320.62	372.77	375.08	168.10	285.07	282.89
27	ER11a	ExonRegion	0	184.04	323.70	364.60	382.17	209.07	272.11	301.83
28	E11a_E12a	KnownJunction	0	132.22	316.15	346.07	343.19	189.59	245.38	305.67
29	E11a_E13a	NovelJunction	1	16.37	33.13	38.74	36.30	3.99	32.94	7.44
30	ER12a	ExonRegion	0	124.97	294.87	316.39	337.96	164.43	224.47	276.08
31	E12a_E13a	KnownJunction	0	120.65	262.66	274.00	266.79	115.20	193.84	234.81
32	ER13a	ExonRegion	0	108.95	237.18	259.23	282.58	140.53	197.87	254.18
33	E13_Da	NovelBoundary	1	47.10	36.73	72.64	32.70	13.95	23.66	19.38
34	E13a_E14b	KnownJunction	0	97.12	227.56	254.10	303.83	136.03	212.71	256.72
35	I13	Intron	0	27.96	19.57	41.02	11.17	12.76	15.43	10.66
36	I13_AR1	ActiveIntronRegion	0	28.51	7.82	34.01	9.72	13.73	12.61	11.12
37	I13_SR1	SilentIntronRegion	0	27.98	22.02	42.61	11.52	12.63	16.07	10.62
38	E14_Aa	NovelBoundary	0	175.13	148.04	114.82	83.77	34.97	83.86	100.02
39	ER14a	ExonRegion	1	94.33	99.82	92.12	70.99	57.59	76.35	44.15
40	E14_Ab	KnownBoundary	0	95.17	119.80	99.82	115.16	6.96	145.79	59.36
41	ER14b	ExonRegion	0	156.21	318.02	325.99	342.58	176.93	295.94	274.22
42	E14a_E15a	KnownJunction	0	122.75	266.55	244.37	324.80	160.22	254.76	260.24
43	ER15a	ExonRegion	0	115.27	314.31	258.26	336.79	142.32	259.17	264.71
44	E15a_E16a	KnownJunction	0	119.47	266.66	280.98	281.88	177.21	211.45	259.84
45	ER16a	ExonRegion	0	128.45	318.86	259.20	313.74	169.16	262.46	293.93
46	E16a_E17a	KnownJunction	0	92.60	335.49	214.98	340.67	145.16	286.28	291.70
47	I16_SR2	SilentIntronRegion	1	19.67	9.14	7.43	5.03	1.83	3.82	4.90
48	ER17a	ExonRegion	0	103.15	316.33	238.32	324.99	179.43	280.14	305.30
49	E17a_E18a	KnownJunction	0	128.53	336.93	298.96	343.27	162.55	299.67	343.75
50	ER18a	ExonRegion	0	170.77	347.43	296.20	385.31	173.04	340.08	368.78
51	E18a_E19a	KnownJunction	0	154.97	383.09	273.55	385.75	129.00	350.59	348.90
52	ER19a	ExonRegion	0	116.96	293.24	200.48	285.60	120.63	229.18	232.80
53	ER19b	ExonRegion	0	28.54	28.64	33.77	43.64	35.86	33.98	35.75
54	ER19c	ExonRegion	0	13.11	13.43	15.18	16.43	18.63	14.21	13.57
55	IG31_AR3	ActiveIntergenicRegion	0	57.37	53.78	108.30	81.20	34.42	64.31	59.83
56	IG31_SR4	SilentIntergenicRegion	0	12.78	11.58	25.75	17.22	7.25	13.82	10.88
57	IG31_AR2	ActiveIntergenicRegion	0	46.00	69.07	81.64	103.03	33.36	108.70	57.23