Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C9orf86	Gene	0	74.84	110.76	78.01	98.24	199.63	50.87	157.71
2	371671	Transcript	0	9.44	6.22	4.86	1.97	72.05	1.74	5.16
3	371673	Transcript	0	23.97	24.90	24.05	23.46	62.29	9.70	45.50
4	371675	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	311502	Transcript	0	0	0	0	0	0	0	0
6	371663	Transcript	0	0	0	0	0	0	0	0
7	357466	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.00	3.58	0.00	0.94	0.00	0.00	1.59
9	E1_Ab	KnownBoundary	0	0.00	7.83	0.00	3.09	0.00	1.45	5.13
10	ER1b	ExonRegion	0	1.89	11.52	1.32	11.96	5.39	6.20	6.71
11	E1_Ac	KnownBoundary	0	15.09	42.85	10.68	39.28	22.89	15.84	38.84
12	ER1c	ExonRegion	0	45.91	81.70	54.82	68.97	128.51	44.59	102.52
13	E1a_E2a	KnownJunction	0	122.87	150.54	119.03	118.69	246.53	67.13	190.08
14	ER2a	ExonRegion	0	117.58	201.27	135.10	156.61	337.65	79.61	266.95
15	E2a_E3a	KnownJunction	0	137.66	227.35	167.41	180.51	469.17	73.70	329.81
16	ER3a	ExonRegion	0	187.74	248.03	253.43	212.81	456.69	104.62	399.75
17	E3a_E4a	KnownJunction	0	175.34	199.51	231.82	167.96	458.06	93.26	359.09
18	ER4a	ExonRegion	0	203.72	250.01	232.60	207.35	525.82	95.91	398.63
19	E4a_E5a	KnownJunction	0	176.40	226.54	192.30	207.41	601.33	83.21	346.23
20	ER5a	ExonRegion	0	197.96	229.85	216.31	203.16	682.63	86.22	440.47
21	E5_Da	NovelBoundary	1	15.25	44.21	38.86	32.18	16.04	12.78	14.35
22	E5a_E6a	KnownJunction	0	200.18	208.91	245.68	158.24	731.84	64.48	454.66
23	I5	Intron	0	14.25	19.38	26.79	21.55	12.30	12.29	8.26
24	I5_AR1	ActiveIntronRegion	0	14.49	26.82	25.95	21.09	14.38	13.71	7.60
25	I5_SR1	SilentIntronRegion	1	13.98	20.43	25.68	21.48	16.73	17.26	7.10
26	I5_AR2	ActiveIntronRegion	1	10.77	18.73	23.32	24.99	11.33	11.02	8.30
27	I5_AR3	ActiveIntronRegion	0	15.38	20.24	28.77	18.77	10.13	13.36	7.88
28	I5_SR3	SilentIntronRegion	1	17.77	15.06	35.78	26.92	14.69	11.09	11.97
29	I5_AR4	ActiveIntronRegion	1	19.15	20.06	37.64	25.64	16.14	10.82	8.22
30	E6_Aa	NovelBoundary	1	42.83	20.05	80.00	48.98	22.94	12.92	18.80
31	ER6a	ExonRegion	0	232.93	212.42	236.26	190.69	665.77	88.59	421.21
32	E6a_E7a	KnownJunction	0	7.56	5.46	3.05	4.28	11.53	1.50	6.98
33	E6a_E7b	KnownJunction	0	228.59	238.47	238.19	246.42	659.82	99.53	481.44
34	ER7a	ExonRegion	0	64.36	69.25	69.09	66.09	175.33	27.58	129.52
35	ER7b	ExonRegion	0	251.34	253.70	268.31	225.43	640.71	102.35	497.05
36	E7a_E8a	KnownJunction	0	9.11	4.86	2.90	0.00	69.64	1.42	4.54
37	E7a_E9a	KnownJunction	0	199.65	211.22	227.01	217.76	419.70	83.56	433.74
38	ER8a	ExonRegion	0	9.76	7.59	6.82	3.93	74.46	2.05	5.78
39	E8_Da	NovelBoundary	0	23.27	10.17	21.73	9.05	84.88	6.41	12.02
40	I8_AR1	ActiveIntronRegion	0	13.51	4.92	8.69	4.62	45.49	2.67	7.21
41	ER9a	ExonRegion	0	138.56	178.70	142.63	184.17	386.79	83.44	326.02
42	E9a_E10a	KnownJunction	0	101.54	134.04	130.71	138.41	296.81	68.34	295.07
43	ER10a	ExonRegion	0	45.11	78.21	56.63	65.49	149.87	38.36	145.38
44	E10_Da	KnownBoundary	0	12.23	21.17	8.31	15.23	28.82	10.34	21.91
45	E10a_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E10_Db	KnownBoundary	1	12.18	28.16	11.41	16.72	73.47	21.20	49.50
47	E10b_E16c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER10b	ExonRegion	0	25.36	71.68	22.35	48.63	142.53	36.78	85.67
49	ER10c	ExonRegion	0	32.88	82.24	31.41	57.66	159.22	36.14	101.57
50	E10c_E11a	KnownJunction	0	52.72	87.17	47.01	54.91	134.93	43.23	120.57
51	ER11a	ExonRegion	0	62.94	118.70	56.95	92.86	131.17	49.23	143.18
52	E11_Da	KnownBoundary	0	62.60	124.47	69.47	102.76	136.98	57.43	144.79
53	E11a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER11b	ExonRegion	0	58.20	134.57	62.16	101.29	156.09	63.02	153.07
55	E11b_E12a	KnownJunction	0	60.48	138.42	63.37	106.66	168.89	59.31	171.42
56	ER12a	ExonRegion	0	69.42	151.61	73.45	134.50	207.99	72.52	191.92
57	E12a_E13a	KnownJunction	0	83.27	143.89	70.83	153.09	208.10	61.91	232.11
58	E12a_E13b	NovelJunction	1	12.68	1.63	5.02	11.97	7.03	0.00	2.39
59	ER13a	ExonRegion	0	71.69	153.56	71.32	159.14	257.30	75.73	218.99
60	E13_Ab	KnownBoundary	0	79.24	142.73	94.34	163.82	314.90	95.89	208.61
61	ER13b	ExonRegion	0	96.18	144.00	91.31	158.79	193.62	73.97	210.87
62	E13a_E14a	KnownJunction	0	57.93	115.59	71.65	133.53	212.29	59.47	151.57
63	ER14a	ExonRegion	0	91.46	114.69	73.35	102.35	164.81	52.18	148.61
64	E14a_E15a	KnownJunction	0	89.41	138.16	76.67	83.93	147.08	35.38	126.35
65	ER15a	ExonRegion	0	62.71	130.81	58.77	77.92	97.02	36.34	77.21
66	E15a_E16a	KnownJunction	0	45.01	112.05	38.58	62.96	76.01	39.10	32.12
67	ER16a	ExonRegion	0	43.57	82.70	39.59	69.94	69.88	31.14	40.88
68	E16_Ab	KnownBoundary	0	8.38	9.20	11.15	7.94	10.03	6.65	11.67
69	E16_Ac	KnownBoundary	0	9.63	13.50	11.86	14.39	13.95	12.19	10.39
70	ER16b	ExonRegion	0	18.44	25.51	18.97	39.90	32.39	22.07	13.49
71	ER16c	ExonRegion	0	43.14	85.06	42.91	79.19	95.58	48.89	77.84
72	E16_Da	KnownBoundary	0	49.10	75.90	48.96	65.94	69.76	37.52	106.74
73	ER16d	ExonRegion	0	25.66	43.87	26.85	35.93	48.11	29.51	49.78
74	IG48_AR5	ActiveIntergenicRegion	0	6.56	5.21	2.05	2.68	2.81	4.10	9.40