Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COL27A1	Gene	0	50.07	22.67	66.10	50.73	27.06	66.56	7.40
2	356083	Transcript	0	43.30	15.41	54.28	34.14	18.93	52.46	4.96
3	357257	Transcript	0	0.30	0.46	1.36	0.54	0.12	0.55	0.04
4	374106	Transcript	0	1.34	2.13	3.92	6.26	1.24	6.36	0.46
5	ER1a	ExonRegion	0	3.48	3.43	1.64	2.79	0.32	4.02	0.26
6	E1_Ab	KnownBoundary	0	2.82	5.46	4.56	7.42	0.00	13.67	0.00
7	ER1b	ExonRegion	0	1.83	2.73	2.43	6.73	0.69	6.31	0.14
8	E1a_E2b	KnownJunction	1	2.02	2.55	2.44	16.74	0.00	6.65	0.63
9	ER2a	ExonRegion	0	2.69	2.43	3.73	9.35	0.40	4.90	0.34
10	ER2b	ExonRegion	0	11.38	10.27	20.33	27.99	6.49	33.42	2.51
11	E2a_E3a	KnownJunction	0	18.04	14.92	25.95	30.64	4.66	54.48	1.76
12	ER3a	ExonRegion	0	46.25	34.35	70.82	66.12	19.29	77.90	8.20
13	E3a_E4a	KnownJunction	0	21.00	16.52	24.96	17.56	3.32	24.63	3.94
14	ER4a	ExonRegion	0	20.15	16.65	29.50	22.93	5.37	26.95	4.96
15	E4a_E5a	KnownJunction	0	17.92	12.90	25.19	25.47	7.61	26.91	4.01
16	ER5a	ExonRegion	0	18.67	17.28	35.26	32.14	8.08	34.87	5.62
17	E5a_E6a	KnownJunction	1	13.85	8.04	23.01	11.16	2.12	16.70	4.39
18	E5a_E7a	KnownJunction	0	3.35	7.22	12.75	21.94	3.04	22.86	1.42
19	ER6a	ExonRegion	0	18.49	11.74	26.09	10.62	7.05	28.02	4.16
20	E6a_E7a	KnownJunction	1	18.51	11.38	20.45	4.52	7.38	27.87	3.31
21	ER7a	ExonRegion	0	24.03	11.36	38.74	39.33	14.95	34.21	5.75
22	E7a_E8a	KnownJunction	1	18.29	5.36	38.53	36.27	11.13	16.08	7.15
23	E7a_E10a	KnownJunction	0	0.00	0.00	1.61	0.00	0.00	1.29	0.00
24	ER8a	ExonRegion	1	22.57	6.10	39.66	39.82	9.23	25.01	7.84
25	E8a_E9a	KnownJunction	1	22.61	2.94	34.68	34.62	7.65	23.82	7.01
26	ER9a	ExonRegion	1	22.61	8.98	33.56	39.35	5.77	26.65	7.80
27	E9a_E10a	KnownJunction	1	28.96	9.17	27.17	35.19	6.25	25.49	7.28
28	ER10a	ExonRegion	0	27.34	9.07	36.25	30.81	8.04	32.26	6.34
29	E10a_E11a	KnownJunction	0	21.45	9.01	31.64	18.91	10.54	32.72	3.65
30	ER11a	ExonRegion	1	27.72	6.16	45.51	30.64	14.02	36.28	4.05
31	E11a_E12a	KnownJunction	0	31.26	9.17	43.97	39.80	16.23	25.03	4.04
32	ER12a	ExonRegion	0	21.70	11.04	40.18	35.33	13.43	28.88	2.98
33	E12a_E13a	KnownJunction	0	0.00	0.00	0.73	0.00	1.18	1.45	0.00
34	E12a_E14a	KnownJunction	0	11.05	13.74	25.78	24.68	10.70	24.07	2.49
35	ER13a	ExonRegion	0	0.64	1.01	0.79	0.00	1.57	1.28	0.53
36	E13_Da	NovelBoundary	0	1158.18	703.10	880.83	537.98	1515.19	500.81	606.28
37	ER14a	ExonRegion	0	30.67	13.39	40.83	32.49	12.73	32.60	3.55
38	E14a_E15a	KnownJunction	0	45.65	8.51	51.56	29.94	13.88	43.66	3.07
39	ER15a	ExonRegion	0	34.22	13.82	50.26	36.69	12.69	45.09	2.71
40	E15a_E16a	KnownJunction	0	17.49	14.19	37.20	32.81	12.08	38.14	4.40
41	ER16a	ExonRegion	1	19.42	17.05	43.63	38.12	9.28	39.44	1.86
42	E16a_E17a	KnownJunction	0	21.10	12.06	51.52	31.43	7.56	35.59	3.41
43	ER17a	ExonRegion	0	18.68	13.53	46.74	27.24	8.87	34.82	4.09
44	E17a_E18a	KnownJunction	1	17.94	10.77	28.67	17.58	13.85	19.75	5.33
45	ER18a	ExonRegion	0	23.32	12.08	40.76	30.97	10.42	38.19	5.56
46	E18a_E19a	KnownJunction	0	21.06	12.32	40.75	35.00	12.61	34.52	4.92
47	E18a_E20a	NovelJunction	1	0.00	0.00	3.05	6.50	0.00	17.80	0.00
48	ER19a	ExonRegion	0	21.33	16.42	33.13	25.75	13.47	30.90	2.47
49	E19a_E20a	KnownJunction	0	26.59	14.50	25.28	14.30	11.76	17.34	1.33
50	ER20a	ExonRegion	0	28.16	20.72	45.07	28.13	9.36	38.05	4.02
51	E20a_E21a	KnownJunction	0	24.77	16.16	43.64	34.46	13.30	47.86	5.23
52	ER21a	ExonRegion	0	24.03	12.71	39.21	21.66	8.73	35.21	3.84
53	E21a_E22a	KnownJunction	1	12.23	10.75	34.50	14.44	5.33	27.76	2.39
54	ER22a	ExonRegion	0	12.54	10.75	21.68	15.36	7.72	19.73	2.96
55	E22a_E23a	KnownJunction	0	11.10	8.56	12.42	14.49	9.31	12.30	2.52
56	ER23a	ExonRegion	0	14.77	11.61	9.41	19.59	7.13	16.70	2.10
57	E23a_E24a	KnownJunction	0	12.73	9.93	9.43	30.10	7.26	20.26	3.14
58	ER24a	ExonRegion	1	14.60	4.81	19.03	27.32	10.56	26.09	0.57
59	E24a_E25a	KnownJunction	1	14.25	4.39	24.14	28.01	7.75	19.51	0.73
60	ER25a	ExonRegion	0	15.88	7.75	23.08	29.62	11.14	25.17	2.61
61	E25_Da	NovelBoundary	0	9.33	5.86	18.98	1.06	3.11	1.63	2.59
62	E25a_E26a	KnownJunction	1	15.72	11.24	18.75	24.79	12.70	23.05	4.44
63	I25	Intron	0	16.28	3.08	17.67	3.49	8.56	2.88	1.40
64	I25_SR1	SilentIntronRegion	0	17.49	3.22	18.76	3.72	9.38	2.84	1.40
65	E26_Aa	NovelBoundary	0	13.15	5.96	16.02	2.74	13.90	4.34	1.52
66	ER26a	ExonRegion	0	17.67	11.92	26.03	34.48	16.78	28.22	3.07
67	E26a_E27a	KnownJunction	0	17.56	11.64	24.77	38.93	15.68	21.47	3.97
68	ER27a	ExonRegion	0	20.04	16.15	28.99	39.74	9.96	31.01	3.35
69	E27a_E28a	KnownJunction	0	21.11	19.55	33.22	27.52	12.66	39.53	4.87
70	ER28a	ExonRegion	0	25.09	20.29	41.18	31.04	15.73	53.58	3.36
71	E28a_E29a	KnownJunction	0	22.08	18.05	37.18	32.81	16.78	54.38	2.19
72	ER29a	ExonRegion	0	29.13	17.41	35.68	41.29	15.91	45.32	2.94
73	E29a_E30a	KnownJunction	0	22.75	18.84	19.74	39.36	14.68	32.91	3.25
74	ER30a	ExonRegion	0	23.85	11.88	23.75	41.91	12.67	41.18	3.94
75	E30a_E31a	KnownJunction	0	26.82	8.20	25.38	33.54	9.59	32.59	3.40
76	ER31a	ExonRegion	0	16.85	7.67	21.75	27.16	8.24	36.53	2.98
77	E31a_E32a	KnownJunction	0	7.38	9.93	17.57	14.06	9.08	31.41	3.37
78	ER32a	ExonRegion	0	11.00	10.23	18.05	23.86	12.92	30.11	2.91
79	E32a_E33a	KnownJunction	0	17.41	13.11	20.10	31.21	18.90	15.41	3.02
80	ER33a	ExonRegion	0	20.89	11.59	22.69	35.22	11.35	31.97	3.31
81	E33a_E34a	KnownJunction	0	14.39	7.15	27.29	32.78	8.21	43.68	3.78
82	ER34a	ExonRegion	1	23.17	14.04	23.63	31.01	7.69	37.14	6.07
83	E34a_E35a	KnownJunction	1	25.82	18.84	17.83	28.74	8.41	24.49	6.29
84	E34a_E36a	NovelJunction	0	0.00	1.34	0.00	8.72	0.00	8.63	0.00
85	ER35a	ExonRegion	1	23.72	17.46	18.69	21.87	11.14	29.47	6.33
86	E35a_E36a	KnownJunction	1	16.52	11.40	19.82	16.63	7.91	28.41	5.02
87	ER36a	ExonRegion	0	18.83	14.13	24.49	20.25	12.85	36.80	3.61
88	E36a_E37a	KnownJunction	0	17.46	17.76	25.95	19.26	12.56	42.96	2.04
89	ER37a	ExonRegion	1	23.82	23.69	34.02	29.97	16.44	37.17	1.36
90	E37a_E38a	KnownJunction	1	27.67	26.82	41.86	34.89	11.87	37.12	0.76
91	ER38a	ExonRegion	0	31.90	25.07	35.42	42.81	14.31	50.04	4.20
92	E38a_E39a	KnownJunction	0	29.66	22.46	36.96	43.81	17.38	45.32	5.55
93	ER39a	ExonRegion	0	29.02	25.33	44.49	47.36	23.67	45.68	6.61
94	E39a_E40a	KnownJunction	0	27.52	17.73	45.97	42.34	37.85	45.77	6.76
95	ER40a	ExonRegion	0	30.25	24.02	32.22	41.95	15.93	41.63	3.62
96	E40a_E41a	KnownJunction	0	24.00	25.88	35.41	31.94	8.85	44.14	4.37
97	ER41a	ExonRegion	0	26.33	22.47	37.77	48.10	15.03	56.94	3.92
98	E41a_E42a	KnownJunction	0	25.10	16.68	40.04	61.88	19.99	68.93	3.97
99	ER42a	ExonRegion	0	35.39	18.63	34.21	51.68	14.89	57.08	5.68
100	E42a_E43a	KnownJunction	1	30.71	10.98	25.35	26.01	13.92	38.78	7.35
101	ER43a	ExonRegion	0	24.62	11.55	36.21	41.30	13.74	45.36	4.28
102	E43a_E44a	KnownJunction	0	20.36	11.19	43.44	46.08	9.08	53.33	4.50
103	ER44a	ExonRegion	0	18.91	12.69	36.10	39.28	12.12	46.77	2.52
104	E44a_E45a	KnownJunction	0	19.31	11.98	36.74	34.73	21.21	40.49	2.22
105	ER45a	ExonRegion	0	20.45	13.99	29.30	30.13	15.70	37.98	1.60
106	E45a_E46a	KnownJunction	0	13.30	12.08	20.08	20.86	15.75	38.11	1.72
107	E45a_E47a	NovelJunction	0	0.80	1.18	0.89	9.10	0.00	1.58	0.76
108	ER46a	ExonRegion	0	15.47	10.98	22.34	18.47	9.27	38.85	3.41
109	E46a_E47a	KnownJunction	1	19.59	7.28	24.26	9.86	5.07	32.19	4.16
110	ER47a	ExonRegion	0	21.37	11.18	20.07	16.37	6.90	42.64	3.90
111	E47a_E48a	KnownJunction	1	19.34	18.42	26.54	15.77	8.02	46.07	3.54
112	ER48a	ExonRegion	0	28.28	17.35	32.82	33.89	14.07	54.89	4.69
113	E48a_E49a	KnownJunction	1	24.85	23.04	37.05	50.34	20.36	54.91	9.06
114	ER49a	ExonRegion	0	34.71	27.91	48.15	48.74	17.85	69.12	7.79
115	E49a_E50a	KnownJunction	0	41.46	28.16	65.16	56.21	24.69	82.46	3.74
116	ER50a	ExonRegion	0	37.85	29.16	65.10	56.60	12.50	69.95	7.06
117	E50a_E51a	KnownJunction	0	34.70	31.45	62.94	54.91	9.91	61.45	4.07
118	ER51a	ExonRegion	0	20.49	19.73	39.89	34.71	13.75	69.59	2.57
119	E51a_E52a	KnownJunction	0	19.76	11.40	36.29	32.21	14.06	62.87	1.42
120	ER52a	ExonRegion	0	22.20	16.82	40.54	34.52	11.44	62.99	6.37
121	E52a_E53a	KnownJunction	1	27.22	23.67	43.41	34.22	14.75	55.53	9.60
122	ER53a	ExonRegion	0	34.64	23.80	49.41	34.71	11.92	59.91	5.48
123	E53a_E54a	KnownJunction	1	30.63	17.86	42.32	23.30	14.75	55.56	1.65
124	ER54a	ExonRegion	1	41.52	21.70	54.79	40.42	21.37	60.21	2.17
125	E54a_E55a	KnownJunction	1	21.78	12.19	37.54	27.93	19.69	34.97	0.73
126	E55a_E56a	KnownJunction	0	21.80	12.45	28.04	27.93	13.97	29.24	2.57
127	ER55a	ExonRegion	1	40.09	20.05	55.13	41.43	20.07	54.83	2.17
128	ER56a	ExonRegion	0	39.64	19.34	54.28	42.29	10.15	52.55	3.67
129	E56a_E57a	KnownJunction	0	29.46	10.85	33.71	22.16	5.95	27.04	3.21
130	E56b_E58a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
131	ER56b	ExonRegion	0	0.00	0.00	0.51	0.62	0.00	0.00	0.00
132	E57a_E58b	KnownJunction	0	29.39	16.92	50.61	35.35	16.07	60.27	4.90
133	ER57a	ExonRegion	0	40.95	20.25	56.10	38.98	11.19	65.02	4.80
134	ER58a	ExonRegion	0	0.89	1.38	3.57	1.00	0.36	1.66	0.13
135	E58_Ab	KnownBoundary	0	0.00	1.63	4.51	0.00	0.00	1.10	0.00
136	ER58b	ExonRegion	0	42.43	25.94	67.14	48.50	21.68	69.00	7.23
137	E58a_E59a	KnownJunction	0	48.25	26.17	66.30	44.35	32.44	48.91	8.68
138	ER59a	ExonRegion	0	51.16	26.76	83.98	58.15	34.09	82.50	12.75
139	E59a_E60a	KnownJunction	1	37.92	33.76	60.00	47.84	35.36	82.62	21.84
140	E59a_E61a	NovelJunction	1	0.00	0.00	0.50	4.71	0.00	10.72	0.00
141	I59_AR1	ActiveIntronRegion	0	7.58	4.28	8.52	10.99	0.66	8.38	0.69
142	E60_Aa	NovelBoundary	0	5.79	8.64	9.36	9.62	0.00	13.45	3.22
143	ER60a	ExonRegion	1	43.24	37.97	75.36	72.21	39.92	98.50	15.43
144	E60a_E61a	KnownJunction	1	45.48	32.16	77.59	89.73	47.86	96.59	20.12
145	ER61a	ExonRegion	1	45.45	28.96	80.00	72.92	51.99	102.37	16.08
146	E61a_E62a	KnownJunction	1	42.81	24.09	85.66	80.98	63.99	112.18	18.73
147	ER62a	ExonRegion	1	45.92	32.48	75.83	87.53	61.11	105.69	15.19
148	E62_Da	KnownBoundary	0	70.98	39.62	81.42	115.76	51.38	96.08	11.84
149	ER62b	ExonRegion	0	113.22	25.63	129.34	71.39	61.13	105.94	11.62