Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHYHD1	Gene	0	12.75	9.92	11.90	4.04	30.92	12.50	2.90
2	372592	Transcript	0	17.64	8.98	21.37	0.00	38.57	22.27	0.00
3	353176	Transcript	0	2.75	0.00	2.31	1.06	3.99	0.00	0.00
4	308941	Transcript	0	0.00	7.15	0.89	0.00	8.14	10.45	0.00
5	ER1a	ExonRegion	0	6.65	4.07	3.74	3.62	5.49	4.04	3.39
6	E1a_E2a	KnownJunction	0	0.00	0.00	2.08	0.00	2.35	0.00	0.80
7	E2_Aa	NovelBoundary	0	2.59	1.08	0.00	3.06	0.00	9.41	2.36
8	ER2a	ExonRegion	0	2.31	3.86	4.00	3.12	7.79	2.09	1.30
9	E2a_E3a	KnownJunction	0	1.87	4.31	5.29	0.00	3.50	2.89	0.00
10	ER3a	ExonRegion	0	10.22	10.80	14.69	0.83	60.20	11.40	1.38
11	E3a_E4a	KnownJunction	0	23.68	18.92	28.94	1.68	79.28	23.64	1.75
12	ER4a	ExonRegion	0	17.71	14.49	22.17	6.42	44.18	26.83	2.99
13	E4a_E5a	KnownJunction	0	32.09	21.70	34.17	4.09	64.32	28.14	4.14
14	E5_Aa	NovelBoundary	0	2.57	3.18	5.91	5.85	7.56	11.82	0.85
15	ER5a	ExonRegion	0	28.21	16.54	33.49	3.66	114.53	25.12	3.95
16	E5a_E6a	KnownJunction	0	22.33	11.90	27.12	1.65	100.16	25.94	3.02
17	I5	Intron	0	0.26	3.59	0.00	6.19	0.54	9.66	2.00
18	I5_AR1	ActiveIntronRegion	0	0.26	3.63	0.00	6.27	0.55	9.77	2.03
19	E6_Aa	NovelBoundary	0	2.69	8.04	1.55	6.61	1.18	5.41	0.67
20	ER6a	ExonRegion	0	26.03	18.73	38.43	1.20	75.86	28.43	2.66
21	E6_Da	NovelBoundary	1	0.88	5.46	0.62	7.91	0.00	19.54	5.57
22	E6a_E7a	KnownJunction	0	23.00	21.46	29.79	0.00	59.48	24.17	3.88
23	ER7a	ExonRegion	0	25.70	19.57	31.55	3.61	59.68	25.33	3.06
24	E7a_E8a	KnownJunction	0	22.30	15.55	24.69	6.53	64.94	21.39	3.81
25	E7a_E9a	KnownJunction	0	2.75	0.00	2.31	1.06	3.99	0.00	0.00
26	E8_Aa	NovelBoundary	0	0.00	6.04	0.59	5.50	0.00	8.87	0.89
27	ER8a	ExonRegion	0	16.87	15.99	22.44	2.97	55.92	23.96	2.32
28	E8a_E9a	KnownJunction	0	17.64	8.98	21.37	0.00	38.57	22.27	0.00
29	E8a_E10a	KnownJunction	0	0.00	7.15	0.89	0.00	8.14	10.45	0.00
30	ER9a	ExonRegion	0	14.57	14.03	17.09	1.47	34.82	13.65	0.00
31	ER10a	ExonRegion	0	16.24	14.48	13.46	3.33	39.98	12.59	2.29
32	E10a_E11a	KnownJunction	0	4.02	6.52	7.80	0.00	34.14	7.29	1.61
33	ER11a	ExonRegion	0	16.28	12.30	14.20	2.45	47.77	9.38	1.82
34	E11a_E12a	KnownJunction	0	16.09	8.59	7.60	0.00	43.64	6.91	0.00
35	E12_Aa	NovelBoundary	0	2.99	1.18	1.34	5.96	0.00	7.85	3.93
36	ER12a	ExonRegion	0	21.73	21.98	19.71	7.86	65.28	21.67	3.52
37	E12a_E13a	KnownJunction	0	31.09	12.27	32.88	5.66	50.99	25.51	1.66
38	E13_Aa	NovelBoundary	0	1.89	8.43	1.52	1.68	18.26	2.87	4.31
39	ER13a	ExonRegion	0	14.12	10.19	9.67	5.13	27.85	16.74	3.04