Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RALGPS1	Gene	0	12.43	3.61	5.79	2.17	53.77	1.79	3.91
2	394022	Transcript	0	0	0	0	0	0	0	0
3	373446	Transcript	0	0	0	0	0	0	0	0
4	259351	Transcript	0	7.37	2.37	3.90	2.17	32.35	1.53	2.68
5	373442	Transcript	0	22.23	5.33	14.46	3.72	115.70	3.19	3.41
6	373439	Transcript	0	0.32	0.35	0.28	0.00	0.60	0.29	0.19
7	319107	Transcript	0	2.03	0.42	0.38	0.00	2.85	1.27	0.33
8	373436	Transcript	0	0.67	0.26	0.19	0.09	0.66	0.18	0.00
9	394011	Transcript	0	0	0	0	0	0	0	0
10	394012	Transcript	0	3.55	1.23	1.45	4.36	14.85	9.17	0.64
11	373434	Transcript	0	6.40	0.39	2.43	0.80	19.85	0.00	1.41
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1c	ExonRegion	0	0.00	1.06	0.00	0.00	0.00	0.00	0.00
16	ER1d	ExonRegion	0	0.00	1.21	0.00	0.28	0.00	0.00	0.00
17	E1_Ae	KnownBoundary	0	0.00	1.29	0.00	1.08	0.00	0.00	0.77
18	ER1e	ExonRegion	0	0.01	0.91	0.00	0.62	0.46	0.15	0.81
19	E1_Da	KnownBoundary	0	0.68	0.00	0.00	0.00	0.00	0.00	0.00
20	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	2.17	0.00	0.00
21	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER1f	ExonRegion	0	0.00	0.61	0.09	1.42	2.21	1.23	0.00
23	E1c_E2a	KnownJunction	0	0.73	1.50	1.95	3.01	8.64	1.47	0.00
24	ER1g	ExonRegion	0	0.92	1.62	1.35	2.83	6.75	1.23	0.00
25	ER2a	ExonRegion	0	4.14	5.77	1.95	4.17	24.29	0.57	3.27
26	E2a_E3a	KnownJunction	0	8.60	9.51	3.61	3.25	28.12	2.55	1.40
27	ER3a	ExonRegion	0	11.78	7.18	5.24	3.74	38.09	5.87	2.79
28	E3a_E4a	KnownJunction	0	13.74	5.46	4.86	2.68	59.89	7.66	3.05
29	ER4a	ExonRegion	0	22.96	6.48	7.09	6.50	61.99	4.21	4.55
30	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4a_E6a	KnownJunction	0	30.71	7.36	10.49	7.04	55.83	1.66	5.13
32	ER5a	ExonRegion	0	0.70	0.00	0.45	0.00	2.15	0.00	0.72
33	E5_Da	KnownBoundary	0	2.45	0.00	0.00	0.00	2.12	0.00	0.89
34	ER5b	ExonRegion	0	2.03	0.42	0.38	0.00	2.85	1.27	0.33
35	ER6a	ExonRegion	0	32.06	8.62	12.59	7.54	81.92	4.95	6.78
36	E6a_E7a	KnownJunction	0	28.56	5.75	9.05	1.03	44.40	0.00	5.26
37	E6a_E8a	KnownJunction	0	3.55	1.23	1.45	4.36	14.85	9.17	0.64
38	ER7a	ExonRegion	0	40.79	5.39	15.56	2.72	66.45	2.36	5.26
39	E7a_E8a	KnownJunction	0	45.98	6.09	19.93	1.49	78.43	3.14	6.61
40	ER8a	ExonRegion	0	39.20	5.43	18.36	7.36	100.16	4.31	6.56
41	E8a_E9a	KnownJunction	0	39.69	4.52	12.44	4.28	89.47	1.61	4.63
42	ER9a	ExonRegion	0	55.47	6.03	18.73	5.13	134.98	4.35	8.75
43	E9_Da	KnownBoundary	0	1.65	0.00	0.00	0.00	2.33	0.00	0.70
44	E9a_E10a	KnownJunction	0	35.37	4.44	23.21	2.63	119.37	5.87	8.97
45	ER9b	ExonRegion	0	0.65	0.70	0.56	0.00	1.21	0.58	0.38
46	Ix_AR2	ActiveIntronRegion	0	0.21	0.33	2.18	3.54	17.42	6.79	0.27
47	Ix_SR4	SilentIntronRegion	0	0.00	0.72	1.48	0.99	11.83	5.13	0.00
48	Ix_AR4	ActiveIntronRegion	0	0.09	0.03	2.06	0.50	13.92	4.19	0.15
49	ER10a	ExonRegion	0	62.69	11.86	25.42	5.99	156.96	3.91	12.62
50	E10a_E11a	KnownJunction	0	54.34	10.46	26.44	5.61	251.02	5.98	13.36
51	ER11a	ExonRegion	0	37.27	7.90	11.76	6.82	137.73	3.95	11.57
52	E11a_E12a	KnownJunction	0	33.18	7.07	10.16	6.77	89.21	2.39	8.04
53	ER12a	ExonRegion	0	24.53	5.40	12.54	9.10	78.29	2.25	8.02
54	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E12a_E15a	KnownJunction	0	14.44	1.39	8.58	6.99	64.04	0.00	6.68
57	ER13a	ExonRegion	0	1.35	0.52	0.39	0.18	1.31	0.35	0.00
58	ER14a	ExonRegion	0	9.62	4.64	5.39	3.77	20.45	2.33	3.72
59	E14_Da	KnownBoundary	0	9272.56	5394.08	7216.44	4810.51	3022.94	4331.97	5179.45
60	ER14b	ExonRegion	0	22.23	5.33	14.46	3.72	115.70	3.19	3.41
61	ER15a	ExonRegion	0	10.54	5.73	4.88	2.40	70.10	1.84	9.76
62	E15a_E16a	KnownJunction	0	6.06	4.62	2.39	0.00	21.78	2.14	1.78
63	E15a_E18a	KnownJunction	0	0.93	4.18	1.93	2.44	36.26	1.45	1.62
64	ER16a	ExonRegion	0	10.41	3.61	3.64	1.24	18.73	1.02	1.21
65	E16a_E17a	KnownJunction	0	3.30	1.52	0.00	4.47	14.41	0.00	0.80
66	ER17a	ExonRegion	0	1.37	0.63	0.00	1.70	8.16	0.00	0.32
67	E17a_E18a	NovelJunction	0	7.81	0.00	3.18	1.35	14.02	1.05	0.56
68	E17a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER18a	ExonRegion	0	10.08	5.96	3.10	2.05	39.74	0.77	3.35
70	E18a_E19a	KnownJunction	0	18.84	8.38	3.82	2.60	53.90	0.00	6.59
71	ER19a	ExonRegion	0	15.07	3.47	7.44	4.02	49.39	3.90	5.38
72	E19a_E20a	KnownJunction	0	8.46	3.76	6.24	2.57	62.70	3.51	6.06
73	ER20a	ExonRegion	0	13.67	8.23	7.80	2.71	54.94	2.60	3.31
74	E20a_E21a	KnownJunction	0	14.72	1.23	7.00	4.12	50.69	2.39	2.95
75	E20a_E21b	KnownJunction	0	1.70	1.05	1.31	0.00	7.47	0.00	0.89
76	E21_Ab	NovelBoundary	0	10.65	0.00	12.44	1.49	52.31	2.95	7.15
77	ER21a	ExonRegion	0	11.90	1.17	9.51	3.24	53.64	3.14	5.69
78	ER21b	ExonRegion	0	11.39	8.67	11.35	3.99	79.13	2.48	7.87
79	E21a_E22a	KnownJunction	0	14.22	2.73	10.75	7.99	74.37	3.24	4.31
80	ER22a	ExonRegion	0	13.29	6.22	9.23	4.91	75.73	4.92	6.25
81	E22a_E23a	KnownJunction	0	0.80	0.00	0.00	0.00	18.63	0.00	1.61
82	E22a_E24a	KnownJunction	0	5.62	4.44	6.21	2.60	52.15	3.03	6.36
83	I22_AR1	ActiveIntronRegion	0	3.71	2.55	4.95	0.00	14.07	0.65	2.08
84	I22_AR3	ActiveIntronRegion	0	8.26	0.41	2.61	0.00	16.00	0.00	0.23
85	ER23a	ExonRegion	0	0.78	0.96	0.08	0.68	15.80	0.00	1.69
86	E23_Da	KnownBoundary	0	2.67	0.00	1.21	1.52	31.61	0.00	0.00
87	ER23b	ExonRegion	0	10.69	1.34	4.32	0.93	30.59	0.55	1.07
88	E23_Db	KnownBoundary	0	6.19	0.00	4.48	0.00	8.35	0.00	0.00
89	ER23c	ExonRegion	0	6.40	0.39	2.43	0.80	19.85	0.00	1.41
90	ER24a	ExonRegion	0	12.93	4.12	6.33	2.19	71.62	2.02	5.00