Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CDK9	Gene	0	127.03	190.16	119.82	119.25	229.63	163.52	225.16
2	373265	Transcript	0	0.02	1.37	0.00	0.52	0.02	2.69	0.06
3	373264	Transcript	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	0.02	1.37	0.00	0.52	0.02	2.69	0.06
5	E1_Ab	KnownBoundary	0	3.12	6.86	0.00	4.93	1.04	12.97	2.12
6	ER1b	ExonRegion	0	26.49	71.84	24.97	43.81	42.84	71.86	47.51
7	E1a_E2a	KnownJunction	0	97.37	193.28	94.53	108.20	75.87	176.34	168.11
8	ER2a	ExonRegion	0	145.77	235.77	134.08	122.16	228.58	218.57	198.69
9	E2a_E3a	KnownJunction	0	172.16	251.55	172.08	136.46	481.85	235.49	235.58
10	ER3a	ExonRegion	0	228.42	333.55	246.11	195.72	446.60	309.61	326.07
11	E3_Da	NovelBoundary	1	43.81	14.19	15.18	4.01	7.91	3.03	8.25
12	E3a_E4a	KnownJunction	0	259.14	371.90	271.01	230.25	380.26	374.79	340.26
13	E4_Aa	NovelBoundary	1	40.06	24.83	12.16	12.73	5.92	11.79	20.97
14	ER4a	ExonRegion	0	271.83	388.08	274.15	223.34	398.46	353.47	362.30
15	E4a_E5a	KnownJunction	0	246.46	393.86	233.73	226.73	455.02	376.54	324.26
16	ER5a	ExonRegion	0	139.57	255.49	140.78	125.58	278.29	202.91	241.89
17	E5_Da	NovelBoundary	0	32.48	46.13	26.21	46.11	11.90	48.67	26.37
18	E5a_E6a	KnownJunction	0	55.44	129.54	81.48	53.69	237.47	97.42	160.07
19	I5	Intron	0	23.70	29.07	16.50	24.47	6.71	28.74	15.15
20	I5_SR1	SilentIntronRegion	0	26.90	31.54	19.44	27.45	7.28	35.25	17.25
21	E6_Aa	NovelBoundary	1	16.37	57.72	33.01	55.67	8.60	54.11	30.98
22	ER6a	ExonRegion	0	117.04	215.71	109.88	114.59	362.54	157.13	294.45
23	E6a_E7a	KnownJunction	0	166.82	275.51	168.59	161.16	335.44	214.26	434.89
24	ER7a	ExonRegion	0	144.12	195.40	128.22	140.38	248.71	165.89	277.56
25	IG26	Intergenic	0	39.31	17.74	24.96	11.40	18.64	11.64	28.74
26	IG26_AR1	ActiveIntergenicRegion	0	100.93	38.50	64.36	24.69	65.28	22.88	76.56
27	IG26_AR4	ActiveIntergenicRegion	0	44.83	14.97	31.25	9.67	26.91	8.97	33.27
28	IG26_SR3	SilentIntergenicRegion	0	44.67	19.42	34.99	6.80	19.10	12.48	33.27
29	IG26_AR5	ActiveIntergenicRegion	0	15.92	5.12	7.79	1.25	6.77	7.44	12.24
30	IG26_AR6	ActiveIntergenicRegion	0	59.09	28.09	39.76	19.91	26.20	21.58	54.75
31	IG26_SR4	SilentIntergenicRegion	0	32.69	14.84	33.54	7.70	16.29	12.14	32.85
32	IG26_SR5	SilentIntergenicRegion	0	13.85	9.48	6.18	6.03	0.67	6.01	4.91