Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UBAP2	Gene	0	126.20	143.52	110.55	115.09	203.26	69.35	108.07
2	351580	Transcript	0	23.85	54.37	26.08	41.95	17.17	26.54	41.34
3	379260	Transcript	1	7.64	4.02	5.65	18.75	4.36	1.66	2.45
4	360802	Transcript	0	0	0	0	0	0	0	0
5	379238	Transcript	0	77.47	87.52	77.77	77.87	156.45	56.93	67.96
6	379239	Transcript	0	6.66	11.82	3.77	10.65	5.86	6.38	2.25
7	379225	Transcript	0	16.64	6.44	7.82	7.24	9.89	7.72	5.68
8	379235	Transcript	1	22.90	17.13	14.76	15.94	5.74	10.48	8.82
9	ER1a	ExonRegion	0	1.36	0.00	0.00	0.00	3.45	0.00	0.43
10	E1a_E2a	KnownJunction	0	4.44	1.05	1.71	0.00	8.25	0.00	1.33
11	ER1b	ExonRegion	0	3.31	0.69	1.74	0.00	8.45	0.00	1.26
12	ER1c	ExonRegion	0	50.88	60.40	48.75	55.71	103.22	40.25	47.83
13	E1b_E2a	KnownJunction	0	104.06	114.65	106.79	100.02	209.69	73.62	88.08
14	E1b_E3a	NovelJunction	0	1.87	7.88	4.71	8.07	5.76	9.46	3.55
15	ER2a	ExonRegion	0	105.24	108.03	86.78	94.03	82.44	63.07	59.34
16	E2a_E3a	KnownJunction	1	287.63	125.21	220.41	122.75	119.41	75.23	108.76
17	I2_AR2	ActiveIntronRegion	1	33.68	4.48	5.27	2.05	14.92	1.23	10.22
18	I2_SR3	SilentIntronRegion	1	28.77	3.34	7.45	2.59	12.61	1.43	10.39
19	I2_AR6	ActiveIntronRegion	1	26.64	1.21	6.55	0.62	10.53	0.00	6.07
20	ER3a	ExonRegion	0	224.26	167.85	200.19	147.11	364.84	88.98	118.47
21	E3a_E4a	KnownJunction	0	134.32	203.00	118.28	155.10	446.99	74.48	82.79
22	E4_Aa	NovelBoundary	1	59.90	8.35	13.81	1.68	18.86	0.00	10.65
23	ER4a	ExonRegion	1	229.15	181.19	181.03	166.99	246.22	85.10	97.20
24	E4a_E5a	KnownJunction	1	249.23	172.34	189.37	166.04	227.49	80.32	91.51
25	I4_AR1	ActiveIntronRegion	1	28.12	5.31	8.37	1.31	16.17	0.69	8.01
26	I4_AR5	ActiveIntronRegion	1	25.91	3.12	6.93	2.60	10.10	0.83	7.68
27	ER5a	ExonRegion	1	356.35	203.15	252.91	174.06	217.47	122.00	102.89
28	E5_Da	KnownBoundary	1	477.10	240.44	291.60	203.81	180.32	162.06	125.57
29	E5a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER5b	ExonRegion	1	328.87	212.16	205.56	193.35	178.45	129.89	105.59
31	E5b_E6a	KnownJunction	1	223.49	152.56	147.60	145.99	193.25	82.57	77.03
32	ER6a	ExonRegion	1	211.89	167.34	157.28	117.69	216.70	76.18	85.06
33	E6_Da	NovelBoundary	1	48.98	10.06	13.62	1.68	16.48	1.29	11.31
34	E6a_E7a	KnownJunction	0	156.65	129.96	123.41	89.73	163.03	43.82	84.10
35	E6a_E9a	NovelJunction	0	18.04	13.58	13.94	22.51	28.22	13.83	4.97
36	I6	Intron	1	29.08	4.86	6.21	2.98	12.29	1.29	8.79
37	I6_AR5	ActiveIntronRegion	1	46.74	7.36	9.59	4.28	21.12	0.91	13.15
38	I6_SR2	SilentIntronRegion	1	28.10	5.03	5.32	3.19	11.60	1.41	8.30
39	E7_Aa	NovelBoundary	1	57.36	6.07	10.59	2.84	6.80	3.30	6.88
40	ER7a	ExonRegion	0	126.95	139.16	119.16	87.06	186.84	59.18	90.06
41	E7a_E8a	KnownJunction	0	83.97	136.09	101.43	81.57	191.48	63.09	95.58
42	E7a_E9a	NovelJunction	1	14.55	22.20	4.68	6.91	0.85	0.00	0.89
43	I7	Intron	1	29.24	3.51	8.20	2.30	7.56	2.11	7.04
44	I7_SR1	SilentIntronRegion	1	29.28	3.52	8.22	2.30	7.57	2.11	7.05
45	ER8a	ExonRegion	0	88.28	166.26	113.40	108.47	179.63	69.26	111.18
46	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E8a_E10a	KnownJunction	1	7.64	4.02	5.65	18.75	4.36	1.66	2.45
48	I8	Intron	1	28.63	4.40	8.76	3.21	6.42	1.46	5.69
49	I8_SR1	SilentIntronRegion	1	28.66	1.67	8.42	2.06	5.47	0.78	4.32
50	I8_AR3	ActiveIntronRegion	1	31.84	6.05	9.39	5.44	6.71	1.57	6.25
51	I8_SR2	SilentIntronRegion	0	28.58	9.07	9.67	4.04	8.74	2.96	8.35
52	ER9a	ExonRegion	0	80.22	196.54	135.06	115.15	195.81	68.18	112.56
53	E9a_E10a	KnownJunction	0	97.47	158.15	120.42	134.16	210.52	63.09	118.99
54	ER9b	ExonRegion	0	95.75	181.94	135.37	139.81	206.87	74.74	120.64
55	I9	Intron	1	28.28	2.44	7.33	2.58	3.29	1.78	5.48
56	I9_AR1	ActiveIntronRegion	1	26.06	1.90	8.85	2.30	3.44	0.78	4.88
57	I9_SR1	SilentIntronRegion	1	28.89	2.58	6.96	2.66	3.25	2.04	5.64
58	ER10a	ExonRegion	0	97.00	137.83	111.93	127.64	217.90	66.07	129.67
59	E10a_E11a	KnownJunction	0	64.02	114.99	74.64	91.51	167.53	53.44	120.33
60	E10a_E12a	NovelJunction	1	31.89	70.78	45.11	50.58	30.08	38.56	10.26
61	ER11a	ExonRegion	0	61.93	149.18	78.67	86.52	205.20	55.04	117.91
62	E11a_E12a	KnownJunction	0	59.27	161.60	82.26	86.66	202.57	51.94	107.46
63	ER12a	ExonRegion	0	156.55	234.33	148.20	160.58	260.80	93.49	160.23
64	E12a_E13b	KnownJunction	0	172.94	301.70	142.67	189.56	289.87	142.60	153.26
65	ER13a	ExonRegion	0	19.15	3.89	7.93	2.75	9.12	3.70	5.93
66	E13_Ab	KnownBoundary	0	20.45	10.82	8.29	0.00	7.08	1.55	9.85
67	ER13b	ExonRegion	0	203.94	260.86	193.46	209.14	347.22	128.73	185.41
68	E13a_E14a	KnownJunction	0	131.73	232.48	142.32	169.21	291.64	145.95	138.41
69	E14_Aa	NovelBoundary	1	16.61	7.20	7.42	6.23	9.80	22.32	8.08
70	ER14a	ExonRegion	0	232.53	259.67	200.37	184.96	331.96	116.69	165.07
71	E14a_E15a	KnownJunction	1	441.42	237.05	308.92	210.90	480.24	113.71	174.51
72	ER15a	ExonRegion	1	555.44	272.33	414.40	240.91	562.54	132.61	209.82
73	E15_Da	NovelBoundary	1	81.31	11.24	20.55	11.54	5.42	11.23	11.35
74	E15a_E16a	KnownJunction	0	443.12	237.18	351.05	238.48	670.61	123.41	233.11
75	ER16a	ExonRegion	0	298.23	296.85	276.90	228.32	536.72	124.75	275.50
76	E16a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	E17a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	E17a_E30c	NovelJunction	0	74.99	137.22	54.38	141.55	108.62	61.05	59.49
79	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
80	ER18a	ExonRegion	0	174.70	306.57	175.87	244.22	492.19	113.68	304.49
81	E18_Da	KnownBoundary	0	11.20	9.01	5.82	13.19	6.41	22.16	8.58
82	E18a_E19a	KnownJunction	0	146.09	210.62	139.67	177.99	472.79	66.03	242.10
83	ER18b	ExonRegion	0	14.13	8.99	7.71	11.74	10.66	11.74	5.44
84	I18_AR3	ActiveIntronRegion	0	22.94	17.82	14.75	16.41	25.45	18.14	14.55
85	I18_SR3	SilentIntronRegion	0	24.14	11.34	11.64	19.49	4.25	19.51	9.45
86	ER19a	ExonRegion	0	158.83	226.80	134.66	188.02	413.01	105.83	256.35
87	E19_Ab	KnownBoundary	1	131.67	189.68	106.47	166.37	312.16	108.75	195.41
88	ER19b	ExonRegion	0	106.92	186.18	93.21	148.62	301.91	85.42	189.42
89	E19a_E20a	KnownJunction	0	96.67	170.69	80.40	136.86	256.12	62.23	181.58
90	E19a_E21b	KnownJunction	0	6.66	11.82	3.77	10.65	5.86	6.38	2.25
91	ER20a	ExonRegion	0	90.01	180.78	77.70	148.54	298.75	77.24	178.54
92	E20a_E21b	KnownJunction	0	114.86	173.50	86.16	147.29	350.38	90.80	202.63
93	ER21a	ExonRegion	0	22.90	17.13	14.76	15.94	5.74	10.48	8.82
94	E21_Ab	KnownBoundary	0	17.94	21.23	6.18	15.23	18.56	15.33	9.06
95	ER21b	ExonRegion	0	97.02	184.69	86.63	152.12	240.33	85.35	135.48
96	E21a_E22a	KnownJunction	0	93.40	173.86	85.83	118.77	327.56	61.85	125.04
97	ER22a	ExonRegion	0	117.55	183.73	120.87	153.53	306.65	76.54	153.71
98	E22a_E23a	KnownJunction	0	115.66	195.28	130.18	171.32	230.23	89.91	160.61
99	ER23a	ExonRegion	0	77.76	219.51	88.77	176.99	192.80	91.62	147.29
100	E23a_E24a	KnownJunction	0	71.07	192.96	55.90	139.00	201.04	94.82	120.07
101	ER24a	ExonRegion	0	91.34	198.76	103.07	161.85	285.66	95.30	139.79
102	E24_Da	NovelBoundary	1	58.83	19.31	50.93	11.46	2.01	11.42	5.83
103	E24a_E25a	KnownJunction	0	142.90	205.00	159.35	177.61	398.86	113.66	187.30
104	ER25a	ExonRegion	0	151.79	262.08	163.94	201.63	391.23	135.82	251.14
105	E25_Da	KnownBoundary	1	59.10	123.11	63.34	66.81	89.91	61.13	104.09
106	E25a_E25b	KnownJunction	0	89.99	209.86	98.09	163.60	120.22	117.62	185.96
107	E25_Ab	KnownBoundary	1	45.90	120.93	47.80	91.30	169.21	43.76	87.92
108	ER25b	ExonRegion	0	118.08	281.85	138.64	229.44	338.25	136.09	250.50
109	ER25c	ExonRegion	0	102.72	253.61	108.74	203.56	272.04	100.12	192.78
110	E25_Db	KnownBoundary	1	53.83	104.09	41.21	55.40	115.33	24.04	76.57
111	E25b_E25c	KnownJunction	0	58.26	114.49	65.30	73.85	0.00	43.92	83.70
112	E25_Ac	KnownBoundary	1	46.95	96.65	53.24	75.56	98.09	47.73	86.02
113	ER25d	ExonRegion	0	116.19	227.18	110.28	165.35	243.12	95.14	199.00
114	ER25e	ExonRegion	0	137.34	252.90	139.80	186.97	285.82	113.43	218.20
115	E25c_E26a	KnownJunction	0	164.15	272.51	164.30	201.29	309.30	115.10	225.65
116	ER26a	ExonRegion	0	122.98	234.65	132.31	192.13	387.57	93.81	190.09
117	E26a_E27a	KnownJunction	0	114.11	209.94	99.79	182.59	307.57	85.95	174.76
118	ER27a	ExonRegion	0	133.42	211.58	144.88	178.05	363.28	93.72	193.99
119	E27_Da	NovelBoundary	0	39.40	41.19	31.01	29.85	6.25	33.10	20.16
120	E27a_E28a	KnownJunction	0	132.70	191.02	169.70	127.87	288.71	76.92	186.92
121	I27	Intron	0	23.29	17.47	14.65	26.69	8.10	12.20	5.38
122	I27_AR1	ActiveIntronRegion	0	23.57	17.66	14.83	26.99	8.20	12.34	5.45
123	E28_Aa	NovelBoundary	0	57.55	35.44	36.34	42.67	6.39	30.47	21.91
124	ER28a	ExonRegion	0	144.73	223.64	153.41	177.34	275.69	111.82	210.42
125	E28a_E29a	KnownJunction	0	158.09	239.65	129.30	199.74	312.09	139.09	193.75
126	ER29a	ExonRegion	0	121.32	181.33	113.10	150.28	254.66	93.02	139.13
127	E29a_E30a	KnownJunction	0	81.96	132.83	68.03	116.65	112.66	71.58	89.49
128	E30a_E30b	KnownJunction	0	18.73	56.25	19.20	56.19	0.00	24.20	19.73
129	E30_Ab	NovelBoundary	0	44.40	120.30	48.61	105.87	130.27	64.69	57.50
130	ER30a	ExonRegion	0	65.10	153.48	60.03	135.09	118.82	75.84	75.04
131	ER30b	ExonRegion	0	67.16	149.18	56.49	123.95	123.10	71.60	72.59
132	ER30c	ExonRegion	0	62.47	154.23	54.62	131.47	126.15	71.89	62.06
133	E30_Db	KnownBoundary	0	24.53	53.30	13.08	37.58	46.06	13.27	22.54
134	E30b_E30c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
135	E30_Ac	KnownBoundary	1	29.57	45.03	25.29	74.09	39.86	21.92	18.27
136	ER30d	ExonRegion	0	65.01	143.35	55.00	133.92	113.70	64.24	57.21
137	ER30e	ExonRegion	0	130.94	176.01	115.35	156.62	233.81	91.01	123.31
138	E30_Dc	KnownBoundary	0	186.28	171.66	176.09	163.66	201.25	97.18	159.58
139	ER30f	ExonRegion	0	156.66	173.11	140.05	143.19	261.52	99.59	134.49
140	E30_Dd	KnownBoundary	0	104.61	86.20	85.14	68.35	141.57	61.10	61.93
141	ER30g	ExonRegion	0	65.00	57.36	51.55	40.89	114.88	31.18	42.84
142	IG3	Intergenic	0	13.70	7.72	6.35	3.67	3.04	1.66	8.70
143	IG3_SR1	SilentIntergenicRegion	0	13.73	7.74	6.36	3.68	3.04	1.67	8.72