Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CNTNAP3	Gene	0	10.22	3.20	12.15	2.04	9.36	0.33	36.66
2	377653	Transcript	0	0.78	0.42	1.19	0.08	1.45	0.04	0.90
3	377659	Transcript	1	5.24	1.01	1.85	0.00	0.94	0.00	18.80
4	297668	Transcript	0	6.11	1.90	6.44	0.67	3.74	0.20	25.22
5	377651	Transcript	0	0	0	0	0	0	0	0
6	323947	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	377656	Transcript	0	0	0	0	0	0	0	0
8	358144	Transcript	0	6.85	1.32	8.33	0.53	8.31	0.25	7.88
9	ER1a	ExonRegion	0	0.58	0.50	0.13	0.00	0.45	0.00	0.94
10	E1_Ab	KnownBoundary	0	2.19	2.47	2.41	0.00	1.18	0.00	3.53
11	ER1b	ExonRegion	1	0.63	1.46	0.88	1.00	1.67	0.00	10.31
12	E1_Ac	KnownBoundary	1	2.00	1.52	4.02	2.65	2.35	0.00	14.29
13	ER1c	ExonRegion	0	6.29	4.69	6.93	2.23	3.73	0.89	30.07
14	E1_Da	KnownBoundary	0	17.69	5.81	18.16	7.64	5.46	0.00	54.86
15	E1a_E1d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1d	ExonRegion	0	8.27	5.01	9.10	5.98	5.48	0.15	39.98
17	E1_Ad	KnownBoundary	0	36.00	7.41	54.12	6.64	5.12	1.02	62.00
18	ER1e	ExonRegion	0	15.06	4.69	18.22	6.53	6.31	1.23	65.38
19	E1b_E2a	KnownJunction	0	17.54	2.84	25.87	9.64	12.75	1.07	67.80
20	ER2a	ExonRegion	0	9.38	9.58	18.08	4.92	6.42	0.10	48.84
21	E2a_E3a	KnownJunction	0	18.43	16.34	34.45	1.68	26.23	0.00	76.40
22	ER3a	ExonRegion	0	16.37	14.86	31.73	2.01	23.49	0.00	78.41
23	ER3b	ExonRegion	0	9.41	7.08	18.03	0.40	8.48	0.00	46.16
24	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER4a	ExonRegion	0	14.42	9.87	19.98	1.79	12.15	0.00	66.24
26	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER5a	ExonRegion	0	50.72	9.37	49.08	8.28	37.28	2.39	126.86
28	E5a_E6a	KnownJunction	0	33.13	7.49	58.43	11.38	9.41	0.00	90.95
29	ER6a	ExonRegion	0	31.17	11.56	38.31	11.16	29.48	1.33	119.28
30	E6a_E7a	KnownJunction	0	16.54	8.30	31.67	4.52	13.85	1.10	89.70
31	ER7a	ExonRegion	0	30.44	9.47	42.85	9.01	24.57	0.09	97.08
32	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER8a	ExonRegion	0	0.85	0.02	1.88	0.00	0.63	0.00	2.30
35	E8_Da	KnownBoundary	0	1.52	0.00	1.42	0.00	1.18	0.00	4.90
36	ER8b	ExonRegion	0	1.77	0.77	3.42	0.23	3.91	0.11	1.76
37	ER9a	ExonRegion	0	65.52	12.14	56.30	4.92	33.91	2.04	148.03
38	E9a_E10a	KnownJunction	0	22.16	6.44	19.13	1.68	11.13	1.37	110.58
39	ER10a	ExonRegion	0	50.91	12.03	59.59	20.94	28.59	0.66	148.25
40	E10a_E11a	KnownJunction	1	9.35	7.22	9.63	6.66	22.48	3.22	94.00
41	E10a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER11a	ExonRegion	1	6.55	3.98	7.76	3.57	11.35	0.67	61.43
43	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER12a	ExonRegion	1	4.21	0.51	1.94	1.48	2.31	0.00	40.82
45	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER13a	ExonRegion	1	8.68	3.05	9.92	1.77	6.51	0.00	68.29
47	E13a_E14a	KnownJunction	1	2.27	1.63	2.27	0.00	3.25	0.00	28.12
48	E13a_E14b	KnownJunction	1	7.08	5.23	18.08	4.39	3.43	0.00	59.40
49	I13_AR1	ActiveIntronRegion	0	2.26	0.41	2.75	0.42	1.72	0.00	7.99
50	ER14a	ExonRegion	1	6.34	3.64	4.91	0.62	3.85	0.00	38.11
51	ER14b	ExonRegion	1	7.48	6.88	6.76	4.26	4.49	0.00	50.50
52	E14a_E15a	KnownJunction	1	8.43	3.94	4.12	1.52	5.49	0.00	77.78
53	ER15a	ExonRegion	0	20.59	3.86	21.88	3.62	14.80	0.27	98.96
54	E15_Da	KnownBoundary	1	14.59	1.10	4.89	0.00	1.18	0.00	38.16
55	E15a_E16a	KnownJunction	0	48.80	4.12	58.49	8.70	30.52	1.66	104.95
56	ER15b	ExonRegion	1	5.24	1.01	1.85	0.00	0.94	0.00	18.80
57	E15_Db	NovelBoundary	0	3.62	0.00	3.88	0.00	3.09	0.00	20.09
58	I15_SR1	SilentIntronRegion	1	1.40	0.38	1.18	0.00	1.18	0.00	9.14
59	ER16a	ExonRegion	0	15.52	2.63	20.42	2.03	25.26	1.36	94.66
60	E16a_E17a	KnownJunction	1	10.26	3.26	23.41	1.68	24.32	1.63	91.03
61	ER17a	ExonRegion	0	13.40	6.39	18.73	2.80	19.23	0.89	91.35
62	E17a_E18a	KnownJunction	1	6.63	5.83	11.45	2.71	13.16	0.00	84.04
63	E18_Aa	NovelBoundary	1	3.37	0.00	11.02	1.60	2.03	0.00	12.70
64	ER18a	ExonRegion	1	4.02	3.15	7.96	1.49	9.48	0.00	47.89
65	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	E18a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER19a	ExonRegion	1	4.00	1.92	10.59	0.66	9.68	0.00	43.85
68	E19a_E20a	KnownJunction	1	4.02	4.28	15.10	2.65	14.55	0.00	77.92
69	ER20a	ExonRegion	1	5.43	3.19	12.06	1.16	14.12	0.00	52.03
70	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER21a	ExonRegion	1	3.62	1.61	10.32	1.12	10.32	0.00	36.97
72	E21_Da	KnownBoundary	0	4.02	1.50	8.56	0.00	11.09	0.00	7.01
73	E21a_E21b	KnownJunction	1	3.24	0.00	5.16	1.63	11.30	0.00	33.48
74	ER21b	ExonRegion	0	10.28	0.73	11.02	0.20	9.25	0.00	10.93
75	E21_Ab	KnownBoundary	0	4.27	1.58	11.78	2.87	7.42	0.00	5.70
76	ER21c	ExonRegion	0	7.78	0.95	12.85	1.93	13.58	0.00	27.32
77	E21_Db	KnownBoundary	0	1.03	2.21	4.24	0.00	4.91	0.00	1.29
78	E21b_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
79	ER21d	ExonRegion	0	3.41	1.91	5.64	0.86	7.37	0.49	4.83
80	E21_Dc	NovelBoundary	0	1.75	0.00	0.89	0.00	9.71	0.00	5.39
81	ER22a	ExonRegion	0	1.15	1.29	2.58	0.99	0.90	0.00	8.13
82	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
83	ER23a	ExonRegion	0	1.23	2.40	1.33	1.04	0.24	0.00	4.51
84	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER24a	ExonRegion	1	5.34	1.64	3.87	1.84	4.74	0.65	29.54
86	E24_Da	KnownBoundary	0	38.72	4.28	37.35	12.76	13.19	0.99	85.36
87	ER24b	ExonRegion	0	6.11	1.90	6.44	0.67	3.74	0.20	25.22