Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C9orf93	Gene	0	4.30	0.73	2.26	0.87	5.82	1.38	5.65
2	380689	Transcript	0	1.50	0.17	1.25	0.27	2.12	1.21	3.05
3	380701	Transcript	0	3.81	0.83	2.44	0.92	3.89	4.49	5.25
4	297641	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.56
5	359391	Transcript	0	0.31	0.04	0.05	0.00	1.87	0.42	0.37
6	ER1a	ExonRegion	0	0.61	0.00	0.72	0.00	1.62	0.00	1.36
7	E1_Ab	KnownBoundary	0	3.62	0.00	1.45	0.00	1.08	0.00	1.40
8	ER1b	ExonRegion	0	2.43	0.21	1.16	1.67	1.80	0.00	2.04
9	E1a_E2a	KnownJunction	0	3.86	1.63	2.87	3.60	1.96	0.00	1.99
10	ER2a	ExonRegion	0	4.20	1.54	2.39	3.35	3.15	0.23	7.74
11	E2a_E3a	KnownJunction	0	5.54	0.00	2.73	2.82	4.79	1.58	8.53
12	ER3a	ExonRegion	0	5.57	1.36	3.40	2.82	5.66	1.24	9.71
13	E3a_E4a	KnownJunction	0	1.60	0.00	2.16	0.00	4.20	1.21	6.89
14	ER4a	ExonRegion	0	3.88	0.00	3.92	0.00	6.62	1.04	9.26
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E4a_E6a	KnownJunction	0	3.81	0.00	1.39	0.00	5.35	1.10	9.46
17	E5_Aa	NovelBoundary	0	922.54	554.25	850.97	522.18	385.70	421.48	479.80
18	ER5a	ExonRegion	0	0.00	0.00	0.52	0.00	0.25	0.58	0.00
19	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER6a	ExonRegion	0	6.59	0.97	3.28	1.81	7.86	2.67	7.31
21	E6a_E7a	KnownJunction	0	3.22	0.00	2.60	1.57	9.64	1.55	6.69
22	ER7a	ExonRegion	0	4.88	1.61	2.15	1.69	6.28	0.27	4.83
23	E7a_E8a	KnownJunction	0	2.69	4.20	1.44	0.00	4.24	0.00	3.73
24	ER8a	ExonRegion	0	7.63	3.24	2.54	0.00	6.82	1.01	5.86
25	E8a_E9a	KnownJunction	0	7.33	4.68	2.51	0.00	10.72	2.87	8.38
26	ER9a	ExonRegion	0	8.29	2.50	3.07	0.00	4.20	2.41	5.04
27	E9a_E10a	KnownJunction	0	5.11	0.00	2.86	0.00	1.04	0.00	6.89
28	ER10a	ExonRegion	0	4.03	2.31	1.70	1.53	4.32	2.31	6.30
29	E10a_E11a	KnownJunction	0	5.17	2.31	3.98	2.93	7.72	0.00	5.85
30	ER11a	ExonRegion	0	5.52	1.31	3.80	2.53	6.00	1.34	8.68
31	E11a_E12a	KnownJunction	0	4.36	0.00	0.62	2.33	4.33	0.00	10.99
32	ER12a	ExonRegion	0	5.35	0.20	5.53	2.47	7.47	1.00	12.31
33	E12a_E13a	KnownJunction	0	7.26	1.26	5.48	0.00	10.33	3.19	12.08
34	ER13a	ExonRegion	0	5.81	0.75	3.97	0.72	7.10	2.01	13.04
35	E13a_E14a	KnownJunction	0	5.54	0.00	4.53	1.22	7.22	4.10	10.10
36	E13a_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E14_Ab	NovelBoundary	0	5.67	1.50	2.85	0.00	6.64	2.84	8.76
38	ER14a	ExonRegion	0	4.95	1.21	3.68	0.70	7.35	3.83	11.28
39	ER14b	ExonRegion	0	6.77	1.07	1.73	0.00	10.73	2.28	8.92
40	E14a_E15b	KnownJunction	0	8.46	1.16	0.50	0.00	8.46	0.00	8.17
41	ER15a	ExonRegion	0	0.94	0.13	0.15	0.00	0.99	0.27	1.12
42	ER15b	ExonRegion	0	7.35	1.30	2.74	0.34	8.16	0.90	9.23
43	E15a_E16a	KnownJunction	0	5.54	0.00	1.57	1.44	9.82	0.00	6.78
44	ER16a	ExonRegion	0	5.29	0.56	2.88	0.78	8.36	0.55	11.18
45	E16a_E17a	KnownJunction	0	6.91	0.00	1.11	0.00	5.05	0.00	10.86
46	ER17a	ExonRegion	0	10.10	1.26	3.31	2.56	9.80	0.78	9.94
47	E17a_E18a	KnownJunction	0	17.47	1.63	1.60	1.41	6.13	3.78	8.58
48	ER18a	ExonRegion	0	6.79	0.78	3.77	1.27	8.09	1.55	9.17
49	E18a_E19a	KnownJunction	0	7.93	2.55	4.41	0.00	11.83	0.00	14.26
50	ER19a	ExonRegion	0	12.70	0.90	5.99	0.00	15.10	0.57	13.61
51	E19a_E20a	KnownJunction	0	12.75	0.00	8.94	0.00	6.66	1.42	9.82
52	ER20a	ExonRegion	0	11.72	0.37	5.57	0.00	11.14	0.54	8.33
53	E20a_E21a	KnownJunction	0	11.35	3.07	2.37	0.00	9.45	0.00	5.96
54	ER21a	ExonRegion	0	6.18	2.91	3.46	0.17	10.15	2.31	8.37
55	E21a_E22a	KnownJunction	0	1.74	4.44	3.38	1.52	13.58	2.81	3.63
56	ER22a	ExonRegion	0	3.69	1.83	3.78	1.26	9.88	2.64	10.90
57	E22a_E23a	KnownJunction	0	2.24	2.36	4.25	1.25	12.47	2.84	7.31
58	ER23a	ExonRegion	0	4.89	2.06	3.03	2.07	12.90	2.32	5.97
59	E23a_E24a	KnownJunction	0	7.26	2.36	3.12	3.96	12.06	1.53	10.98
60	ER24a	ExonRegion	0	5.30	0.62	1.42	1.75	10.84	4.03	9.92
61	E24a_E25a	KnownJunction	0	3.97	0.00	0.85	0.00	9.50	3.32	7.97
62	ER25a	ExonRegion	0	4.45	0.70	1.62	2.15	13.85	2.90	5.79
63	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.56
64	E25a_E27a	KnownJunction	0	7.93	0.00	2.49	0.00	12.54	0.00	4.47
65	E25b_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER25b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E26_Aa	NovelBoundary	0	28.59	14.19	41.69	28.58	2.05	35.32	27.50
68	ER26a	ExonRegion	0	0.44	0.00	0.00	0.00	0.00	0.00	0.00
69	ER27a	ExonRegion	0	6.64	0.97	3.19	2.07	11.78	3.62	5.95
70	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	1.94	0.00	0.00
71	E27a_E29a	KnownJunction	0	5.96	1.60	3.98	1.54	5.05	7.66	8.34
72	ER28a	ExonRegion	0	0.00	0.00	0.00	0.00	2.69	0.99	0.00
73	ER29a	ExonRegion	0	1.67	0.05	0.90	0.30	2.73	1.31	2.15