Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHF20L1	Gene	0	64.04	61.20	52.59	45.45	31.07	72.31	44.47
2	337920	Transcript	0	0.38	0.61	1.69	0.62	1.01	0.61	0.00
3	315808	Transcript	0	0	0	0	0	0	0	0
4	361997	Transcript	0	0	0	0	0	0	0	0
5	395390	Transcript	0	0	0	0	0	0	0	0
6	220847	Transcript	0	0	0	0	0	0	0	0
7	395383	Transcript	0	5.21	7.02	2.79	3.68	1.30	6.84	1.55
8	395379	Transcript	0	0	0	0	0	0	0	0
9	395382	Transcript	0	7.87	4.41	2.82	0.57	0.93	1.70	1.47
10	395386	Transcript	0	0	0	0	0	0	0	0
11	395376	Transcript	0	0	0	0	0	0	0	0
12	395374	Transcript	0	3.06	1.83	2.25	0.53	2.06	1.66	1.77
13	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1c	ExonRegion	0	0.00	0.40	0.00	0.00	0.00	0.14	0.00
16	ER1d	ExonRegion	0	4.01	19.76	3.34	16.18	1.93	19.28	4.84
17	E1_Ae	KnownBoundary	0	11.85	56.85	9.25	28.77	3.09	47.27	14.88
18	ER1e	ExonRegion	0	20.40	65.68	17.95	45.72	6.83	79.90	17.15
19	E1a_E2a	KnownJunction	0	18.04	41.88	13.80	34.54	4.38	50.65	6.39
20	E1a_E2b	KnownJunction	0	17.22	55.35	21.48	32.89	10.03	49.90	19.49
21	I1	Intron	0	13.08	8.10	12.03	13.03	0.83	12.82	1.92
22	I1_SR1	SilentIntronRegion	0	13.28	9.56	12.77	14.20	0.72	15.65	1.93
23	I1_SR2	SilentIntronRegion	0	12.77	5.60	10.81	11.02	1.03	7.99	1.91
24	ER2a	ExonRegion	0	22.90	56.37	24.11	47.14	8.58	66.94	16.59
25	ER2b	ExonRegion	0	78.91	166.29	80.38	119.10	42.25	160.10	49.37
26	E2_Da	NovelBoundary	1	41.41	0.00	35.70	0.00	1.08	0.00	1.36
27	E2a_E3a	KnownJunction	0	97.69	203.66	93.48	144.48	46.06	220.13	58.30
28	I2_AR8	ActiveIntronRegion	1	2.69	13.19	2.13	2.49	2.43	3.68	0.00
29	ER3a	ExonRegion	0	162.53	253.79	160.48	179.98	68.31	240.99	89.92
30	E3a_E4a	KnownJunction	0	188.88	270.41	174.86	197.39	98.99	210.81	79.18
31	E3a_E7b	NovelJunction	1	0.80	1.05	0.00	0.00	1.18	8.82	0.00
32	ER4a	ExonRegion	0	176.74	269.14	173.04	160.05	98.02	194.56	96.53
33	E4a_E5a	KnownJunction	0	154.16	210.67	152.04	103.52	102.33	149.36	96.54
34	E4a_E7b	NovelJunction	0	8.09	6.86	3.62	19.45	0.00	18.73	0.00
35	ER5a	ExonRegion	0	154.27	211.79	143.98	129.25	98.92	163.13	110.82
36	E5a_E6a	KnownJunction	0	7.39	11.56	7.29	6.31	2.07	8.39	7.55
37	E5a_E6b	KnownJunction	0	12.42	24.98	10.15	10.19	3.30	13.53	6.92
38	E5a_E7b	KnownJunction	0	135.16	160.33	119.88	95.50	104.22	130.70	84.57
39	E6_Ab	NovelBoundary	0	9.23	19.70	7.63	6.61	0.00	5.01	3.75
40	ER6a	ExonRegion	0	10.58	14.86	12.19	9.98	2.80	9.81	7.32
41	ER6b	ExonRegion	0	26.08	38.69	21.34	23.00	12.16	20.56	20.96
42	E6a_E7b	KnownJunction	0	40.71	48.34	17.30	24.30	18.28	33.29	21.05
43	I6_AR1	ActiveIntronRegion	0	6.17	12.95	6.66	4.99	1.35	4.30	0.97
44	ER7a	ExonRegion	0	3.06	1.83	2.25	0.53	2.06	1.66	1.77
45	E7_Ab	KnownBoundary	0	2.95	1.47	1.25	1.14	2.12	7.32	0.87
46	ER7b	ExonRegion	0	293.92	301.65	198.60	228.49	152.55	260.69	148.19
47	E7a_E8a	KnownJunction	0	83.38	69.57	67.27	54.78	41.47	46.31	48.88
48	E7a_E8b	KnownJunction	0	169.95	174.92	118.01	158.54	119.14	178.41	93.77
49	E8_Ab	NovelBoundary	1	33.01	8.54	36.57	4.88	0.00	5.33	0.00
50	ER8a	ExonRegion	0	120.84	125.74	99.41	90.40	73.49	104.52	71.17
51	ER8b	ExonRegion	0	212.03	249.30	171.04	183.45	132.41	219.96	133.16
52	E8a_E9a	KnownJunction	0	121.62	219.87	120.18	138.00	131.26	173.77	109.59
53	I8_AR2	ActiveIntronRegion	0	15.70	6.15	9.81	2.88	3.29	4.59	2.50
54	I8_AR4	ActiveIntronRegion	1	6.35	14.07	2.46	0.00	0.81	3.68	2.95
55	ER9a	ExonRegion	0	128.62	196.85	141.31	130.83	90.89	180.28	124.83
56	E9_Da	KnownBoundary	1	5.07	38.17	10.29	13.44	10.10	9.33	11.48
57	E9a_E10a	KnownJunction	0	129.36	142.05	130.20	125.76	65.61	178.54	107.71
58	ER9b	ExonRegion	1	12.52	24.47	9.26	11.92	14.44	7.62	9.75
59	E9_Db	KnownBoundary	0	21.46	23.07	10.94	21.59	24.21	12.06	8.66
60	ER9c	ExonRegion	1	14.66	27.66	13.14	16.27	15.84	11.50	10.05
61	E9_Dc	KnownBoundary	0	5.42	19.13	6.70	12.73	10.70	10.45	8.58
62	ER9d	ExonRegion	0	7.21	15.55	10.45	7.93	7.63	8.42	7.83
63	ER9e	ExonRegion	0	0.38	0.61	1.69	0.62	1.01	0.61	0.00
64	ER10a	ExonRegion	0	174.75	172.97	178.27	139.94	92.41	204.45	144.45
65	E10_Da	NovelBoundary	1	11.30	22.33	8.58	2.63	2.79	6.06	3.84
66	E10a_E11a	KnownJunction	0	177.76	151.27	140.44	117.30	137.97	209.63	134.29
67	E10a_E12a	NovelJunction	0	3.04	4.44	0.68	10.92	0.00	13.53	0.69
68	I10	Intron	0	16.13	7.82	9.27	6.07	3.34	6.95	7.19
69	I10_SR1	SilentIntronRegion	0	16.73	6.76	9.35	6.20	3.69	6.58	7.30
70	I10_AR2	ActiveIntronRegion	0	19.61	12.03	13.60	11.23	3.25	18.32	7.43
71	E11_Aa	NovelBoundary	0	29.69	22.30	19.39	16.23	12.56	30.39	19.33
72	ER11a	ExonRegion	0	133.07	127.22	110.26	119.46	80.11	147.12	98.94
73	E11a_E12a	KnownJunction	0	139.03	116.15	104.76	135.18	61.16	106.02	71.69
74	ER12a	ExonRegion	0	167.39	127.45	103.25	112.24	69.63	150.47	83.56
75	E12_Da	KnownBoundary	0	2.55	7.57	0.60	1.63	1.01	0.00	0.00
76	E12a_E13a	KnownJunction	0	151.48	125.39	107.48	122.97	43.34	199.60	85.23
77	ER12b	ExonRegion	0	7.87	4.41	2.82	0.57	0.93	1.70	1.47
78	I12_SR2	SilentIntronRegion	1	11.27	12.52	3.73	2.26	2.14	3.90	3.11
79	I12_SR3	SilentIntronRegion	1	24.05	10.58	5.01	1.38	5.40	4.37	4.06
80	ER13a	ExonRegion	0	166.51	123.98	121.33	140.47	79.98	185.68	81.91
81	E13_Da	KnownBoundary	1	23.80	7.20	11.47	0.00	0.00	2.81	0.69
82	E13a_E13b	KnownJunction	1	32.61	33.39	21.89	44.70	5.65	86.80	5.79
83	E13a_E13c	KnownJunction	0	104.88	71.09	77.93	90.13	58.05	100.10	60.19
84	ER13b	ExonRegion	0	6.13	3.55	2.54	0.53	0.26	3.11	1.02
85	E13_Ab	KnownBoundary	0	2.75	1.50	1.19	0.00	0.00	1.66	0.00
86	ER13c	ExonRegion	1	23.38	35.59	14.91	36.29	3.71	79.43	6.34
87	E13_Db	KnownBoundary	0	18.78	42.11	11.01	36.84	8.69	78.55	8.20
88	ER13d	ExonRegion	0	4.28	10.50	3.03	6.83	2.34	10.56	2.07
89	E13_Ac	KnownBoundary	0	1.03	5.36	0.80	4.93	0.00	1.66	0.00
90	ER13e	ExonRegion	0	82.46	90.61	56.56	89.76	51.83	124.30	36.77
91	E13_Dc	KnownBoundary	0	17.07	88.98	22.78	65.51	19.99	122.10	10.25
92	ER13f	ExonRegion	0	55.41	90.52	46.96	83.48	45.53	134.33	31.47
93	E13d_E14a	KnownJunction	0	81.01	91.06	70.73	87.75	80.50	151.37	50.07
94	ER14a	ExonRegion	0	147.54	117.66	118.18	106.63	70.36	165.00	90.52
95	E14_Da	NovelBoundary	0	23.72	18.86	10.92	13.92	11.92	15.76	13.46
96	E14a_E15a	KnownJunction	0	175.59	102.77	140.31	96.63	72.99	172.43	110.17
97	I14_AR1	ActiveIntronRegion	0	14.29	8.72	7.67	10.20	9.71	7.34	5.78
98	I14_AR2	ActiveIntronRegion	0	13.72	14.44	4.02	7.01	5.12	6.29	7.13
99	I14_AR3	ActiveIntronRegion	0	10.39	12.64	2.70	4.99	5.67	3.22	3.23
100	I14_AR4	ActiveIntronRegion	0	14.37	12.70	5.40	3.85	5.55	4.22	5.31
101	ER15a	ExonRegion	0	166.21	132.53	124.50	103.31	69.10	169.05	118.20
102	E15a_E16a	KnownJunction	0	149.09	143.81	92.44	89.54	82.30	159.67	127.08
103	ER16a	ExonRegion	0	141.25	118.58	91.91	89.82	64.29	117.02	110.58
104	E16a_E17a	KnownJunction	0	109.97	98.78	75.96	65.37	44.28	116.12	90.13
105	E16a_E18a	NovelJunction	1	5.71	7.09	4.28	9.97	1.87	32.70	7.04
106	ER17a	ExonRegion	0	125.41	109.94	84.90	62.69	57.95	121.64	94.84
107	E17a_E18a	KnownJunction	0	106.21	106.82	76.91	55.18	42.07	95.22	80.06
108	ER18a	ExonRegion	0	168.48	114.36	120.81	84.28	55.34	157.28	104.14
109	E18a_E19a	KnownJunction	0	140.75	86.59	104.66	61.96	76.19	129.17	109.36
110	ER19a	ExonRegion	0	96.97	99.58	84.94	82.76	49.65	136.48	90.97
111	E19a_E20a	KnownJunction	0	116.71	99.60	108.80	77.56	52.21	124.89	95.36
112	ER20a	ExonRegion	0	71.34	51.49	63.29	40.20	32.01	90.27	58.11