Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EIF2C2	Gene	0	105.75	317.19	114.68	242.25	78.97	189.79	73.65
2	220592	Transcript	0	105.42	343.32	112.79	259.51	71.94	192.69	72.77
3	IG42_SR2	SilentIntergenicRegion	0	4.58	8.19	2.80	7.05	3.80	9.05	1.63
4	IG42_AR2	ActiveIntergenicRegion	0	7.14	12.56	3.42	7.50	5.88	10.74	0.45
5	ER1a	ExonRegion	0	0.27	9.90	2.79	8.79	1.55	9.14	1.86
6	E1a_E2a	KnownJunction	0	2.14	29.11	6.48	26.09	4.10	21.87	4.03
7	I1_SR3	SilentIntronRegion	0	24.75	12.18	23.10	13.47	4.21	8.25	4.64
8	ER2a	ExonRegion	0	57.80	252.77	69.53	188.34	41.76	169.98	27.10
9	E2a_E3a	KnownJunction	0	103.41	443.99	105.85	301.33	68.61	241.04	57.08
10	ER3a	ExonRegion	0	119.04	484.73	127.48	320.41	70.97	238.64	61.63
11	E3_Da	NovelBoundary	1	9.43	93.08	5.71	14.11	5.14	13.59	2.89
12	E3a_E4a	KnownJunction	0	89.19	426.88	91.01	281.96	76.37	194.83	66.43
13	I3_AR1	ActiveIntronRegion	1	11.92	65.63	8.07	12.50	5.60	16.84	3.70
14	ER4a	ExonRegion	0	96.11	395.77	104.86	259.65	78.86	187.27	69.20
15	E4a_E5a	KnownJunction	0	91.68	383.72	95.00	237.24	49.47	180.98	62.41
16	ER5a	ExonRegion	0	107.01	367.36	113.88	232.83	59.96	172.72	56.21
17	E5a_E6a	KnownJunction	0	150.33	385.64	171.48	239.86	75.66	204.27	59.20
18	ER6a	ExonRegion	0	164.41	379.48	190.94	242.93	71.58	190.32	63.99
19	E6a_E7a	KnownJunction	1	248.66	401.66	240.60	284.32	95.48	189.37	73.84
20	E6a_E8a	NovelJunction	0	0.00	2.78	0.62	8.34	0.00	13.99	0.00
21	ER7a	ExonRegion	0	144.68	338.56	166.94	245.82	66.31	176.54	71.00
22	E7a_E8a	KnownJunction	0	74.09	249.50	103.78	198.82	34.44	131.64	54.77
23	ER8a	ExonRegion	0	116.50	373.68	128.56	261.04	65.94	196.75	69.70
24	E8a_E9a	KnownJunction	0	93.08	383.59	130.28	306.59	69.16	221.69	83.58
25	ER9a	ExonRegion	0	110.46	373.16	127.93	293.09	80.72	181.93	79.24
26	E9a_E10a	KnownJunction	0	148.49	363.57	131.75	243.87	124.42	175.30	82.29
27	ER10a	ExonRegion	0	143.09	393.60	140.01	318.39	77.33	205.28	91.37
28	E10a_E11a	KnownJunction	0	165.13	395.07	146.69	284.94	59.98	220.54	80.21
29	ER11a	ExonRegion	0	150.57	355.42	133.57	291.41	87.79	194.96	87.34
30	E11a_E12a	KnownJunction	0	92.91	313.08	109.66	261.37	77.71	134.37	66.30
31	E11a_E13a	NovelJunction	1	0.73	0.00	0.66	8.80	0.00	8.95	0.00
32	ER12a	ExonRegion	0	91.64	315.59	87.04	240.59	64.01	140.17	66.42
33	E12a_E13a	KnownJunction	0	54.78	297.58	74.27	216.57	64.32	110.79	72.66
34	I12_AR3	ActiveIntronRegion	1	30.25	22.25	15.85	15.73	6.59	9.56	3.66
35	ER13a	ExonRegion	0	85.47	376.37	79.53	263.27	70.70	164.79	79.23
36	E13a_E14a	KnownJunction	0	64.79	318.62	66.92	236.86	39.42	171.55	68.98
37	ER14a	ExonRegion	0	66.34	288.55	56.02	220.33	49.24	152.52	52.00
38	E14a_E15a	KnownJunction	0	54.04	248.66	47.13	197.63	41.47	123.20	39.60
39	ER15a	ExonRegion	0	89.50	315.27	84.30	254.32	73.24	193.08	78.56
40	E15a_E16a	KnownJunction	0	142.01	367.96	139.58	361.61	73.65	275.96	111.77
41	ER16a	ExonRegion	0	103.24	387.95	128.87	331.69	79.18	294.96	91.85
42	E16a_E17a	KnownJunction	0	149.48	409.26	171.81	412.98	92.49	379.19	133.07
43	E16a_E18a	NovelJunction	0	1.75	8.75	4.24	21.59	0.00	16.29	0.89
44	ER17a	ExonRegion	0	122.58	426.28	133.31	360.31	128.58	288.31	114.53
45	E17a_E18a	KnownJunction	0	79.94	359.81	100.26	261.92	95.00	229.86	87.84
46	ER18a	ExonRegion	0	113.20	414.00	115.99	353.08	118.01	284.05	116.56
47	E18a_E19a	KnownJunction	0	107.32	456.99	124.56	381.42	141.87	309.08	135.12
48	ER19a	ExonRegion	0	107.18	219.85	124.53	180.03	92.57	172.72	75.45
49	IG41	Intergenic	0	79.21	127.53	91.07	114.43	123.68	96.19	67.65
50	IG41_AR6	ActiveIntergenicRegion	0	22.09	18.73	20.04	10.39	17.34	6.74	12.42
51	IG41_AR5	ActiveIntergenicRegion	0	40.60	47.58	38.72	25.35	35.63	15.94	25.75
52	IG41_SR5	SilentIntergenicRegion	0	66.53	119.88	58.09	98.12	54.46	54.27	53.78
53	IG41_AR4	ActiveIntergenicRegion	0	40.55	104.84	39.70	107.26	42.16	43.09	42.29
54	IG41_SR4	SilentIntergenicRegion	0	36.20	58.84	35.58	52.00	36.60	26.01	26.60
55	IG41_AR3	ActiveIntergenicRegion	0	85.96	108.67	67.21	76.51	60.99	52.95	41.77
56	IG41_SR3	SilentIntergenicRegion	0	86.92	42.14	64.86	45.46	59.43	40.99	20.57
57	IG41_AR2	ActiveIntergenicRegion	0	93.63	164.36	111.58	116.22	97.43	89.14	71.72
58	IG41_SR2	SilentIntergenicRegion	0	130.16	165.66	170.34	117.85	105.91	95.87	90.62
59	IG41_AR1	ActiveIntergenicRegion	0	91.77	147.68	107.34	138.06	162.28	122.78	82.42