Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DENND3	Gene	0	53.96	109.28	6.68	8.03	5.97	13.25	20.45
2	262585	Transcript	0	60.20	120.05	7.55	7.54	6.07	13.62	26.05
3	395213	Transcript	1	14.33	14.22	1.22	0.34	1.23	2.44	1.58
4	395207	Transcript	0	0.17	0.00	0.00	0.00	0.00	0.00	0.00
5	IG43_AR12	ActiveIntergenicRegion	0	15.11	23.48	1.25	0.69	5.05	4.06	10.08
6	IG43_SR10	SilentIntergenicRegion	0	11.37	11.49	1.61	0.26	0.75	1.13	1.03
7	ER1a	ExonRegion	0	0.41	1.81	0.00	0.00	0.00	0.00	0.00
8	E1_Ab	KnownBoundary	0	15.10	27.56	1.41	1.25	0.95	1.58	2.91
9	ER1b	ExonRegion	0	3.78	34.97	0.01	1.07	0.37	2.24	2.35
10	E1a_E2a	KnownJunction	0	19.06	110.21	0.00	7.10	1.11	8.87	8.48
11	E1a_E2b	KnownJunction	0	1.29	5.83	0.00	0.00	0.00	1.26	0.00
12	ER2a	ExonRegion	0	38.13	145.35	2.99	9.18	1.25	11.70	9.35
13	E2_Ab	KnownBoundary	0	53.47	160.05	4.90	8.40	2.05	14.20	8.90
14	ER2b	ExonRegion	0	48.03	166.20	5.79	8.49	2.74	19.90	14.13
15	E2a_E3a	KnownJunction	0	40.06	164.70	9.92	7.23	2.21	14.47	24.88
16	E2a_E7a	NovelJunction	0	1.85	9.22	0.00	0.00	0.00	1.50	0.00
17	ER3a	ExonRegion	0	62.11	178.68	12.07	10.84	4.15	17.63	28.63
18	E3_Da	NovelBoundary	1	19.49	7.20	2.57	0.00	0.00	0.00	0.82
19	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3b_E4a	KnownJunction	1	50.19	110.79	4.83	2.36	1.11	15.52	22.92
21	E3b_E7a	NovelJunction	0	18.19	59.06	1.32	5.47	2.03	10.16	3.43
22	E3b_E9a	NovelJunction	0	2.87	16.13	0.00	0.00	0.00	1.21	0.00
23	ER3b	ExonRegion	1	54.94	130.90	5.42	2.49	1.62	16.24	25.97
24	ER4a	ExonRegion	0	56.44	109.48	6.51	5.02	5.11	15.20	33.64
25	E4a_E5a	KnownJunction	0	4.64	8.22	0.00	0.00	0.00	1.45	0.60
26	E4a_E6a	KnownJunction	1	50.19	88.53	8.39	1.19	5.42	11.74	30.60
27	ER4b	ExonRegion	0	0.51	0.00	0.00	0.00	0.00	0.00	0.00
28	ER5a	ExonRegion	1	24.02	20.23	2.43	0.67	2.46	3.43	2.55
29	E5_Da	NovelBoundary	1	40.66	21.83	4.07	0.00	0.00	1.53	1.59
30	I5	Intron	1	15.52	7.89	2.18	0.38	1.65	0.74	0.30
31	I5_AR1	ActiveIntronRegion	1	20.88	8.21	2.24	0.00	2.86	0.47	0.00
32	I5_SR1	SilentIntronRegion	1	18.14	8.44	2.64	0.00	1.11	0.81	0.34
33	ER6a	ExonRegion	0	72.93	83.14	13.41	5.09	4.72	12.84	28.77
34	E6_Da	NovelBoundary	1	27.07	8.91	0.50	0.00	0.00	3.38	0.00
35	E6a_E7a	KnownJunction	0	73.27	65.10	9.73	6.10	2.05	13.51	27.83
36	E7_Aa	NovelBoundary	1	21.76	9.06	2.39	0.00	1.94	0.00	0.69
37	ER7a	ExonRegion	0	91.91	185.52	19.59	12.41	5.28	34.64	47.95
38	E7a_E8a	KnownJunction	0	85.77	239.67	15.56	13.38	2.93	25.35	42.16
39	ER8a	ExonRegion	0	87.91	245.88	15.50	14.84	8.26	33.28	46.92
40	E8a_E9a	KnownJunction	0	84.17	198.85	8.67	10.24	4.15	26.42	50.62
41	ER9a	ExonRegion	0	93.65	219.94	14.32	13.47	6.46	23.03	36.09
42	E9a_E11a	KnownJunction	0	65.78	154.69	6.44	9.97	4.29	21.76	20.87
43	E9a_E13a	NovelJunction	0	5.16	16.29	3.94	1.06	0.95	6.16	3.63
44	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER11a	ExonRegion	1	71.51	142.78	9.07	59.69	6.40	19.28	19.56
46	E11a_E12a	KnownJunction	1	102.63	111.00	15.95	3.68	6.80	17.02	21.58
47	E11a_E13a	NovelJunction	1	6.18	69.30	0.73	1.11	0.00	7.05	1.50
48	E11a_E14a	NovelJunction	0	1.55	9.38	0.00	0.00	0.00	1.13	0.00
49	ER12a	ExonRegion	0	75.55	88.23	10.91	6.29	6.76	15.95	16.50
50	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER13a	ExonRegion	1	51.49	51.46	9.51	0.82	1.65	6.20	12.82
52	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER14a	ExonRegion	0	5.46	7.71	1.35	0.93	1.25	1.63	2.64
54	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER15a	ExonRegion	0	0.33	0.78	0.00	0.00	0.10	0.00	0.00
56	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	Ix_SR2	SilentIntronRegion	0	15.02	14.07	1.57	2.32	1.99	3.80	2.25
58	ER16a	ExonRegion	0	32.58	53.72	4.00	1.97	2.93	6.76	15.03
59	E16a_E17a	KnownJunction	1	78.29	146.80	9.24	3.01	9.94	16.86	34.71
60	ER17a	ExonRegion	0	65.35	172.18	9.43	7.74	10.90	15.90	39.50
61	E17_Da	NovelBoundary	1	19.33	21.54	1.14	2.63	6.52	1.66	0.59
62	E17a_E18a	KnownJunction	1	37.02	137.95	11.15	3.36	6.66	14.31	33.48
63	I17	Intron	1	25.89	28.65	3.64	3.17	2.08	2.17	1.45
64	I17_AR1	ActiveIntronRegion	1	15.03	22.26	1.37	2.53	0.89	0.68	0.78
65	I17_SR1	SilentIntronRegion	1	29.09	28.75	4.09	3.32	2.18	3.17	1.12
66	I17_AR2	ActiveIntronRegion	1	26.20	34.38	4.31	3.35	2.91	0.47	3.10
67	E18_Aa	NovelBoundary	1	29.34	41.61	6.90	5.55	5.49	1.26	0.76
68	ER18a	ExonRegion	0	86.19	184.98	12.80	8.10	8.62	16.29	35.89
69	E18_Da	NovelBoundary	1	43.74	9.67	1.71	0.00	5.28	4.98	3.17
70	E18a_E19a	KnownJunction	0	70.77	155.68	15.45	7.18	6.36	15.81	43.52
71	I18	Intron	0	18.02	15.78	1.75	1.94	2.27	2.51	2.23
72	I18_SR1	SilentIntronRegion	0	23.71	15.76	1.87	1.66	2.01	2.36	2.42
73	E19_Aa	NovelBoundary	1	22.00	20.91	5.29	3.14	5.35	0.00	0.62
74	ER19a	ExonRegion	0	76.94	151.44	10.89	6.33	11.70	19.38	37.98
75	E19a_E20a	KnownJunction	0	90.53	150.85	6.11	6.12	18.21	14.82	40.66
76	E20_Aa	NovelBoundary	1	16.54	8.30	0.69	2.41	0.00	0.00	1.28
77	ER20a	ExonRegion	0	104.41	185.40	11.05	10.95	13.57	13.30	43.01
78	E20_Da	NovelBoundary	1	28.91	23.80	4.68	8.07	2.28	0.00	0.54
79	E20a_E21a	KnownJunction	1	66.73	163.96	5.06	9.83	2.21	8.58	35.38
80	I20	Intron	1	16.11	7.70	1.76	0.82	1.19	1.29	0.98
81	I20_SR1	SilentIntronRegion	0	15.86	9.43	1.72	2.03	0.88	1.54	1.35
82	I20_AR1	ActiveIntronRegion	0	20.89	9.30	3.35	0.45	1.51	2.23	1.70
83	I20_SR2	SilentIntronRegion	1	14.47	5.61	0.92	0.00	1.37	0.54	0.23
84	E21_Aa	NovelBoundary	1	38.95	54.80	3.48	4.28	1.18	7.26	1.78
85	ER21a	ExonRegion	0	105.92	217.35	9.47	12.66	13.83	23.04	54.57
86	E21a_E22a	KnownJunction	1	85.14	201.00	5.32	8.78	14.59	9.03	38.28
87	E21a_E23a	NovelJunction	0	11.82	9.51	0.89	2.95	4.24	0.00	0.00
88	E22_Aa	NovelBoundary	1	52.64	8.35	3.41	1.68	5.07	1.66	1.88
89	ER22a	ExonRegion	0	62.16	159.03	3.91	7.32	9.43	13.80	36.78
90	E22a_E23a	KnownJunction	0	60.85	149.88	4.25	9.02	5.60	17.98	32.17
91	I22	Intron	0	19.34	10.95	0.90	0.87	1.88	1.81	1.93
92	I22_AR1	ActiveIntronRegion	0	21.88	13.77	1.14	1.23	2.00	2.42	2.16
93	E23_Aa	NovelBoundary	1	30.91	17.47	2.21	0.00	1.18	0.00	1.33
94	ER23a	ExonRegion	0	91.03	161.42	6.54	7.93	9.83	13.87	28.97
95	E23_Da	NovelBoundary	0	15.35	7.88	0.73	0.00	0.00	2.92	2.09
96	E23a_E24a	KnownJunction	0	74.04	135.53	4.45	6.96	10.42	18.60	25.25
97	E24_Aa	NovelBoundary	0	15.07	16.92	1.70	1.68	1.18	1.66	2.15
98	ER24a	ExonRegion	0	80.98	137.58	4.82	6.68	7.09	15.92	23.68
99	E24_Da	NovelBoundary	0	24.02	19.91	1.78	0.00	1.13	1.58	3.70
100	E24a_E25a	KnownJunction	0	59.97	119.27	2.50	9.35	5.97	10.13	16.87
101	I24	Intron	0	18.07	9.83	0.72	1.27	1.82	2.69	1.70
102	I24_AR1	ActiveIntronRegion	0	18.15	9.87	0.72	1.27	1.83	2.70	1.71
103	E25_Aa	NovelBoundary	1	37.03	6.99	2.40	0.00	1.01	4.58	1.43
104	ER25a	ExonRegion	0	64.76	127.23	7.28	10.10	8.51	16.58	21.31
105	IG44	Intergenic	0	8.60	15.24	4.28	9.05	13.94	10.47	4.27
106	IG44_SR1	SilentIntergenicRegion	0	19.90	8.66	1.67	3.45	7.49	3.98	1.34
107	IG44_AR2	ActiveIntergenicRegion	0	12.73	7.58	1.80	1.39	5.24	2.29	0.93
108	IG44_AR3	ActiveIntergenicRegion	0	11.26	8.51	1.03	3.53	7.82	4.61	1.13
109	IG44_AR5	ActiveIntergenicRegion	0	9.40	25.14	8.03	17.46	25.25	19.59	8.14