Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SULF1	Gene	0	0.18	0.00	18.61	6.26	3.00	0.99	1.12
2	260128	Transcript	0	0.01	0.00	1.04	0.59	1.48	0.05	0.11
3	ER1a	ExonRegion	0	0.12	0.00	1.47	6.11	17.66	0.00	1.31
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	1.19	2.35	0.00	0.00
5	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	3.90	10.07	0.00	0.69
6	ER2a	ExonRegion	0	0.00	0.00	0.00	0.82	3.40	0.00	0.31
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	0.00	0.00	1.55	3.70	23.73	0.00	0.94
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER4a	ExonRegion	0	0.00	0.00	0.10	0.89	15.92	0.00	0.18
11	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.41	0.00	0.00
13	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	Ix	Intron	0	0.16	0.00	13.01	11.12	7.76	0.94	0.23
25	Ix_SR1	SilentIntronRegion	0	0.00	0.00	8.55	5.32	11.51	0.92	0.00
26	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	13.09	13.47	8.11	0.33	0.00
27	Ix_SR2	SilentIntronRegion	0	0.26	0.00	14.05	11.22	7.35	1.21	0.39
28	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	Ix	Intron	0	0.27	0.00	17.09	12.94	2.65	0.96	0.29
33	Ix_SR1	SilentIntronRegion	0	0.00	0.00	12.28	17.10	7.89	0.00	0.00
34	Ix_AR2	ActiveIntronRegion	0	0.40	0.00	23.06	19.46	2.74	1.43	0.56
35	Ix_SR2	SilentIntronRegion	0	0.28	0.00	15.63	6.34	0.43	1.01	0.16
36	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	Ix_AR3	ActiveIntronRegion	0	0.01	0.00	9.33	7.45	1.36	0.61	0.09
39	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	Ix	Intron	0	0.34	0.09	22.55	13.10	0.41	1.20	0.36
42	Ix_SR1	SilentIntronRegion	0	0.34	0.09	22.60	13.11	0.41	1.21	0.36
43	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	Ix	Intron	0	0.14	0.00	10.29	8.84	0.64	1.45	0.11
58	Ix_SR1	SilentIntronRegion	0	0.11	0.00	12.90	9.60	0.38	1.95	0.15
59	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	9.65	11.52	1.99	0.69	0.00
62	Ix_SR1	SilentIntronRegion	0	0.09	0.27	11.84	10.51	1.85	1.76	0.30
63	Ix_AR5	ActiveIntronRegion	0	0.00	0.53	22.35	14.55	2.80	0.89	0.35
64	Ix_AR7	ActiveIntronRegion	0	0.33	0.26	9.83	12.13	0.45	1.04	0.29
65	Ix_SR4	SilentIntronRegion	0	0.27	0.00	11.89	7.07	0.39	0.44	0.71
66	ER23a	ExonRegion	0	0.40	0.00	43.79	13.80	3.12	2.35	2.42
67	IG15_AR1	ActiveIntergenicRegion	0	0.83	3.65	2.56	4.95	6.70	12.32	0.04
68	IG15_SR2	SilentIntergenicRegion	0	1.16	2.78	3.03	4.19	8.15	8.33	0.00
69	IG15_AR2	ActiveIntergenicRegion	0	0.67	3.34	3.44	5.68	7.92	12.44	0.00
70	IG15_SR3	SilentIntergenicRegion	0	0.91	6.22	4.32	3.79	7.27	8.81	0.15