Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PAXIP1	Gene	0	42.65	34.93	57.66	53.05	158.55	80.13	30.13
2	404141	Transcript	0	9.48	11.63	12.31	14.31	44.60	24.36	8.06
3	323199	Transcript	0	2.01	6.54	5.58	2.74	7.49	5.65	4.61
4	397192	Transcript	0	0	0	0	0	0	0	0
5	357094	Transcript	0	23.10	33.47	30.11	41.64	99.43	78.50	24.81
6	IG29_AR1	ActiveIntergenicRegion	0	15.83	12.75	11.03	7.43	24.60	4.81	9.09
7	ER1a	ExonRegion	0	0.00	0.00	0.02	0.00	0.09	0.00	0.00
8	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1b	ExonRegion	1	13.26	8.49	10.44	13.34	44.77	12.04	1.61
10	E1a_E2a	KnownJunction	1	15.00	10.75	7.95	17.66	36.49	15.49	1.42
11	ER2a	ExonRegion	0	36.88	40.91	46.25	38.24	70.73	55.12	14.33
12	E2a_E3a	KnownJunction	0	43.58	42.93	63.29	39.72	149.98	59.33	17.83
13	ER3a	ExonRegion	0	46.30	51.71	65.00	39.39	139.72	85.07	21.14
14	E3a_E4a	KnownJunction	0	36.93	43.74	47.18	29.23	117.02	77.37	14.49
15	ER4a	ExonRegion	0	37.04	50.44	57.87	43.59	111.59	73.31	19.22
16	E4a_E5a	KnownJunction	0	1.82	8.22	7.59	3.36	6.36	9.30	4.59
17	E4a_E6a	KnownJunction	0	30.93	38.12	56.91	51.18	113.51	68.88	19.59
18	ER5a	ExonRegion	0	2.57	6.95	6.85	3.30	9.74	6.05	6.49
19	E5a_E6a	KnownJunction	0	1.65	4.44	2.28	1.54	6.36	1.61	2.77
20	E6_Aa	NovelBoundary	1	16.22	1.21	28.67	0.00	3.07	1.21	0.00
21	ER6a	ExonRegion	0	47.16	44.97	78.30	57.81	117.12	85.35	27.26
22	E6a_E7a	KnownJunction	0	49.55	44.71	76.45	71.03	143.48	74.66	27.24
23	ER7a	ExonRegion	0	62.37	43.69	98.52	66.53	175.49	96.92	36.21
24	E7a_E8a	KnownJunction	0	49.42	63.34	88.39	72.63	256.69	121.70	48.64
25	ER8a	ExonRegion	0	57.10	57.70	71.02	78.85	228.73	122.10	38.69
26	E8_Da	KnownBoundary	0	37.82	52.96	42.39	69.54	199.59	113.93	43.94
27	E8a_E8b	KnownJunction	0	23.10	33.47	30.11	41.64	99.43	78.50	24.81
28	ER8b	ExonRegion	0	29.19	34.56	34.50	50.40	199.78	70.22	33.20
29	E8_Ab	KnownBoundary	0	24.00	30.47	24.96	53.29	167.13	65.04	31.99
30	ER8c	ExonRegion	0	27.65	31.91	36.49	58.02	160.50	69.37	33.09
31	E8b_E9a	KnownJunction	0	42.08	24.80	59.55	68.84	182.16	65.63	39.54
32	ER9a	ExonRegion	0	51.79	38.02	66.93	78.62	207.60	91.73	45.59
33	E9a_E10a	KnownJunction	0	42.94	51.60	52.22	74.04	182.97	113.26	36.76
34	ER10a	ExonRegion	0	45.78	34.48	47.93	78.71	155.86	88.59	36.96
35	E10a_E11a	KnownJunction	0	46.65	29.82	62.01	73.55	152.93	86.51	39.17
36	E10a_E12a	NovelJunction	0	0.00	2.78	0.89	1.22	0.00	8.39	0.89
37	E11_Aa	NovelBoundary	1	21.16	2.13	29.17	0.00	1.18	1.50	0.89
38	ER11a	ExonRegion	0	45.57	39.98	59.59	73.00	176.85	90.73	37.07
39	E11a_E12a	KnownJunction	0	47.85	44.71	53.44	48.36	217.11	98.06	31.01
40	ER12a	ExonRegion	0	51.41	45.79	71.19	65.83	213.95	96.57	40.01
41	E12a_E13a	KnownJunction	0	45.56	38.83	71.91	69.98	207.71	86.35	33.81
42	ER13a	ExonRegion	0	57.15	36.25	78.45	55.68	197.99	94.98	42.44
43	E13a_E14a	KnownJunction	0	44.50	35.49	62.91	45.27	159.53	78.74	33.48
44	E14_Aa	NovelBoundary	1	20.38	1.21	28.27	0.00	0.88	0.00	0.54
45	ER14a	ExonRegion	0	48.39	45.28	69.20	58.27	218.99	91.31	34.63
46	E14a_E15a	KnownJunction	0	37.32	41.75	55.40	54.45	256.58	71.37	28.92
47	ER15a	ExonRegion	0	59.69	51.47	81.51	73.25	234.50	109.51	47.65
48	E15a_E16a	KnownJunction	0	70.25	55.83	91.25	70.57	249.62	126.55	57.90
49	ER16a	ExonRegion	0	49.05	42.41	70.42	61.43	231.37	88.37	40.66
50	E16a_E17a	KnownJunction	0	38.17	48.65	58.82	61.42	272.14	73.73	42.58
51	ER17a	ExonRegion	0	44.76	34.45	57.43	62.70	231.15	85.91	39.45
52	E17a_E18a	KnownJunction	0	45.20	28.53	52.60	65.32	237.17	99.08	28.56
53	I17_AR2	ActiveIntronRegion	1	10.41	4.07	6.91	1.58	2.39	4.96	8.16
54	E18_Aa	NovelBoundary	0	13.75	4.76	8.72	6.91	5.81	5.36	9.19
55	ER18a	ExonRegion	0	70.41	45.39	77.27	76.87	251.93	141.61	50.88
56	E18_Da	NovelBoundary	1	7.14	5.94	10.43	6.12	3.00	23.32	8.87
57	E18a_E19a	KnownJunction	0	66.03	27.24	69.25	61.52	258.56	98.11	37.18
58	ER19a	ExonRegion	0	59.36	31.87	62.19	63.70	245.30	101.03	35.71
59	E19_Da	NovelBoundary	0	9.55	4.81	10.09	9.92	1.15	15.36	17.08
60	E19a_E20a	KnownJunction	0	47.18	24.88	53.75	38.42	205.24	83.45	23.58
61	ER20a	ExonRegion	0	45.68	27.53	51.99	44.71	163.45	86.74	23.89
62	E20a_E21a	KnownJunction	1	37.60	20.28	42.59	60.93	128.80	97.90	26.87
63	E21_Aa	NovelBoundary	0	15.94	7.62	13.15	4.47	0.00	9.19	11.92
64	ER21a	ExonRegion	0	34.10	27.18	37.62	53.50	148.63	83.97	26.76
65	E21_Da	NovelBoundary	0	16.59	0.00	13.80	4.25	6.34	7.69	4.69
66	E21a_E22a	KnownJunction	0	9.80	16.16	10.26	18.18	41.03	23.18	9.92
67	E21b_E22b	KnownJunction	1	12.13	8.09	19.74	10.70	62.54	42.72	5.92
68	ER21b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E22_Aa	NovelBoundary	0	4.22	7.86	6.98	4.71	5.53	8.12	9.59
70	ER22a	ExonRegion	0	27.92	29.16	37.93	39.07	136.06	73.97	21.14
71	ER22b	ExonRegion	0	27.16	18.57	36.80	31.33	77.88	64.82	17.57
72	ER22c	ExonRegion	0	0.19	1.21	1.02	0.00	1.21	0.31	1.18