Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WDR91	Gene	0	46.02	30.60	33.52	53.02	26.79	32.50	42.53
2	326099	Transcript	0	15.03	13.65	11.01	18.37	2.15	12.88	15.17
3	344400	Transcript	1	1.80	2.52	5.75	10.32	0.85	11.47	14.25
4	354475	Transcript	0	30.89	34.91	25.76	43.91	22.90	21.72	29.31
5	ER1a	ExonRegion	0	27.34	15.44	15.26	36.66	15.06	23.98	29.45
6	E1a_E2a	KnownJunction	0	5.97	12.24	4.28	25.03	1.01	9.97	9.89
7	E2_Aa	NovelBoundary	0	5.47	7.25	7.43	9.86	0.00	9.19	4.23
8	ER2a	ExonRegion	0	52.58	42.37	36.04	81.77	22.02	57.67	48.98
9	E2a_E3a	KnownJunction	0	42.13	36.41	34.09	83.74	18.03	45.08	41.79
10	ER3a	ExonRegion	0	57.07	44.90	56.44	87.68	23.71	72.92	54.49
11	E3_Da	KnownBoundary	0	37.94	32.73	42.46	49.66	19.27	49.34	35.20
12	E3a_E3b	KnownJunction	0	36.65	26.90	26.74	29.29	1.11	18.47	22.46
13	E3_Ab	KnownBoundary	0	24.58	19.81	24.60	26.87	12.45	15.03	19.00
14	ER3b	ExonRegion	0	71.62	52.72	76.82	86.54	37.09	73.81	67.86
15	ER3c	ExonRegion	0	64.68	37.10	56.78	75.65	42.13	41.51	58.58
16	E3_Db	NovelBoundary	0	61.40	33.26	48.83	65.59	42.65	37.28	46.82
17	E3b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E3c_E5b	KnownJunction	0	68.46	46.53	54.03	63.26	34.53	53.14	40.43
19	ER3d	ExonRegion	0	65.99	43.30	57.50	73.97	40.72	48.40	43.36
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER5a	ExonRegion	0	11.65	7.90	9.14	11.22	5.67	8.79	7.20
23	ER5b	ExonRegion	0	63.05	37.19	61.17	68.22	31.46	40.38	46.79
24	E5a_E6a	KnownJunction	0	61.80	29.32	55.02	77.53	44.70	36.02	52.20
25	ER6a	ExonRegion	0	57.64	32.44	47.62	59.35	34.40	34.76	44.64
26	E6_Da	NovelBoundary	1	16.71	10.22	5.71	15.09	2.05	1.42	12.18
27	E6a_E7a	KnownJunction	0	24.92	13.92	25.05	44.16	12.38	27.01	21.87
28	E7_Aa	NovelBoundary	0	15.42	20.07	13.02	15.55	1.18	6.00	10.58
29	ER7a	ExonRegion	0	29.67	20.68	24.86	39.59	17.13	26.88	35.55
30	E7a_E8a	KnownJunction	0	16.94	22.41	15.15	51.88	17.80	31.97	29.49
31	ER8a	ExonRegion	0	27.38	20.70	16.01	27.35	16.44	21.05	27.61
32	E8_Da	NovelBoundary	1	11.32	11.11	5.45	8.18	0.00	0.00	3.35
33	E8a_E9a	KnownJunction	0	19.56	17.18	23.83	31.18	15.05	19.27	16.21
34	I8_AR1	ActiveIntronRegion	0	12.95	7.52	5.20	5.62	1.80	1.75	4.41
35	ER9a	ExonRegion	0	21.78	26.08	18.03	34.91	16.84	17.20	16.75
36	E9_Da	KnownBoundary	0	10.97	16.18	6.97	23.05	7.38	8.28	11.39
37	E9a_E9b	KnownJunction	1	14.52	24.33	2.43	24.68	0.00	13.64	14.93
38	E9_Ab	KnownBoundary	0	12.50	12.30	8.64	7.37	8.11	11.23	16.61
39	ER9b	ExonRegion	0	25.51	30.61	13.68	35.41	15.23	20.60	25.50
40	ER9c	ExonRegion	0	39.90	39.34	28.22	49.05	26.67	21.23	41.51
41	E9b_E10a	KnownJunction	0	47.83	42.06	44.62	45.59	49.15	26.29	60.81
42	E10a_E10b	KnownJunction	0	15.66	9.67	20.61	14.76	0.00	6.65	19.02
43	E10_Ab	NovelBoundary	0	47.48	34.60	55.28	52.64	29.37	29.08	57.93
44	ER10a	ExonRegion	0	51.62	42.57	54.43	54.38	42.82	33.16	64.85
45	ER10b	ExonRegion	0	53.64	43.98	57.44	61.35	44.70	38.99	64.49
46	ER10c	ExonRegion	0	53.50	47.17	48.04	64.08	37.08	40.82	54.95
47	E10_Db	KnownBoundary	0	24.93	23.41	19.70	28.17	11.39	17.02	25.22
48	E10b_E10c	KnownJunction	0	29.04	32.73	17.80	39.85	0.00	23.74	32.49
49	E10_Ac	KnownBoundary	0	27.27	19.91	16.57	33.27	6.62	11.50	21.96
50	ER10d	ExonRegion	0	56.56	48.11	42.27	67.83	23.97	37.76	51.54
51	ER10e	ExonRegion	0	53.62	42.52	38.03	70.14	17.80	39.79	54.37
52	E10c_E11a	KnownJunction	0	44.88	35.15	34.75	67.57	12.63	39.50	52.85
53	ER11a	ExonRegion	0	68.96	45.81	50.68	63.62	39.88	37.04	70.97
54	E11a_E12a	KnownJunction	0	68.71	23.54	42.11	50.23	41.36	19.83	54.42
55	ER12a	ExonRegion	0	50.59	33.07	39.04	66.55	30.40	40.44	46.23
56	E12a_E13a	KnownJunction	0	57.65	31.95	43.48	80.03	32.23	40.74	49.93
57	ER13a	ExonRegion	0	52.73	32.77	46.07	63.96	38.00	33.15	46.36
58	E13a_E14a	KnownJunction	0	45.43	23.54	31.34	36.63	35.48	14.12	38.69
59	E13a_E15b	KnownJunction	1	1.80	2.52	5.75	10.32	0.85	11.47	14.25
60	ER14a	ExonRegion	0	38.37	27.39	30.56	35.45	33.35	23.10	43.51
61	E14_Da	KnownBoundary	0	12.08	11.59	11.25	15.66	13.69	14.36	16.45
62	E14a_E14b	KnownJunction	0	16.84	17.79	19.34	14.03	0.00	15.73	21.47
63	E14_Ab	KnownBoundary	0	15.72	13.16	13.39	16.88	9.94	8.01	17.58
64	ER14b	ExonRegion	0	32.12	32.56	28.31	41.40	29.15	27.22	40.61
65	ER14c	ExonRegion	0	29.70	37.36	28.46	40.38	30.25	22.48	30.00
66	E14b_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E14c_E15b	KnownJunction	0	29.24	36.94	24.59	40.77	20.10	20.18	23.20
68	ER14d	ExonRegion	0	31.31	35.23	24.39	49.57	19.44	17.78	24.12
69	I14	Intron	1	16.53	4.24	9.52	8.26	4.19	3.08	15.76
70	I14_AR1	ActiveIntronRegion	1	16.56	4.24	9.54	8.28	4.20	3.09	15.79
71	ER15a	ExonRegion	0	8.84	9.72	8.47	15.28	5.67	7.97	9.78
72	ER15b	ExonRegion	0	38.56	32.14	34.82	64.41	34.90	36.16	45.37
73	E15_Da	KnownBoundary	0	27.35	13.87	20.78	36.30	23.86	18.63	19.82
74	E15a_E15c	KnownJunction	0	15.25	15.45	14.66	26.41	0.00	26.50	23.55
75	E15_Ac	KnownBoundary	0	21.63	9.88	14.73	27.90	15.05	14.02	16.55
76	ER15c	ExonRegion	0	44.11	30.61	34.55	67.83	37.58	37.52	42.09
77	ER15d	ExonRegion	0	35.33	28.36	31.09	65.00	28.56	29.43	45.44
78	E15b_E16a	KnownJunction	0	39.24	30.50	20.05	98.10	25.87	35.80	51.29
79	ER16a	ExonRegion	0	44.40	25.15	20.30	75.03	21.90	29.92	49.25
80	E16_Da	KnownBoundary	1	21.56	6.02	9.30	18.26	9.84	7.10	26.17
81	E16a_E16b	KnownJunction	0	30.23	14.06	13.64	28.53	0.00	18.57	24.84
82	E16_Ab	KnownBoundary	0	20.19	15.63	11.07	33.16	8.53	20.31	18.47
83	ER16b	ExonRegion	0	43.49	24.78	21.27	63.10	20.25	28.20	47.22
84	ER16c	ExonRegion	0	40.17	39.29	24.04	66.32	26.30	39.31	42.83
85	E16_Db	KnownBoundary	1	8.81	23.99	9.46	22.73	17.29	21.25	17.90
86	E16b_E16c	KnownJunction	0	31.78	32.63	21.37	53.10	17.66	40.25	36.59
87	E16_Ac	KnownBoundary	0	15.72	8.72	12.01	22.57	4.86	17.23	13.94
88	ER16d	ExonRegion	0	40.98	45.35	26.64	66.09	30.50	46.59	43.17
89	ER16e	ExonRegion	0	46.69	40.63	24.96	67.37	36.38	43.20	54.09
90	E16_Dc	KnownBoundary	1	41.42	37.54	16.28	51.96	44.31	25.59	48.27
91	ER16f	ExonRegion	0	50.50	25.53	30.04	41.31	26.37	26.12	40.53
92	IG34_AR2	ActiveIntergenicRegion	0	14.35	6.24	7.31	6.82	6.25	6.20	13.59