Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRRAP	Gene	0	101.76	63.23	134.83	91.63	122.56	50.98	56.23
2	355540	Transcript	0	65.24	40.62	116.11	79.70	129.15	34.48	53.53
3	359863	Transcript	0	23.47	14.56	32.43	12.18	25.37	5.12	9.78
4	ER1a	ExonRegion	0	5.62	1.17	8.91	4.94	3.91	3.03	2.07
5	E1a_E2a	KnownJunction	0	9.01	4.28	7.20	10.32	14.89	4.23	3.48
6	ER2a	ExonRegion	1	46.49	42.47	53.04	36.53	27.38	26.79	10.70
7	E2a_E3a	KnownJunction	1	60.03	68.94	63.82	66.05	41.17	34.09	15.35
8	ER3a	ExonRegion	1	134.29	92.72	181.36	94.00	64.55	55.66	22.99
9	E3a_E4a	KnownJunction	1	137.94	98.39	216.65	97.99	76.54	61.18	23.89
10	ER4a	ExonRegion	1	201.46	77.12	239.31	86.43	103.63	65.65	34.51
11	E4a_E5a	KnownJunction	1	251.23	46.66	316.97	61.98	96.48	46.34	41.95
12	ER5a	ExonRegion	1	201.06	67.97	259.24	85.20	100.67	56.73	42.52
13	E5a_E6a	KnownJunction	1	247.03	77.82	261.94	109.29	106.85	64.67	48.61
14	ER6a	ExonRegion	1	260.80	79.53	281.13	109.72	144.32	64.39	60.84
15	E6a_E7a	KnownJunction	1	207.92	66.81	233.22	95.36	130.11	42.40	46.84
16	ER7a	ExonRegion	1	220.74	70.59	229.93	88.73	115.11	31.79	51.39
17	E7a_E8a	KnownJunction	1	219.82	66.86	189.31	76.23	133.50	24.76	46.65
18	ER8a	ExonRegion	0	204.20	71.49	200.08	85.06	126.88	43.20	59.33
19	E8a_E9a	KnownJunction	0	169.62	65.73	214.19	96.93	117.78	41.65	67.21
20	ER9a	ExonRegion	0	214.46	74.22	225.48	117.02	133.66	55.53	62.38
21	E9a_E10a	KnownJunction	0	220.12	65.05	201.54	113.78	138.43	51.83	64.74
22	ER10a	ExonRegion	0	185.34	74.84	187.73	102.00	140.00	46.00	84.31
23	E10a_E11a	KnownJunction	0	179.40	61.08	198.81	96.63	172.64	42.75	72.65
24	ER11a	ExonRegion	1	282.94	111.99	280.13	132.62	178.14	52.44	75.58
25	E11a_E12a	KnownJunction	0	269.14	114.70	290.94	125.08	161.60	60.38	85.03
26	ER12a	ExonRegion	0	216.71	94.06	232.82	126.27	153.38	63.71	82.09
27	E12a_E13a	KnownJunction	0	134.75	66.83	154.85	93.79	106.23	27.71	57.64
28	ER13a	ExonRegion	0	112.24	60.85	149.34	94.69	96.40	35.77	61.11
29	E13a_E14a	KnownJunction	0	85.57	65.05	135.44	80.43	84.40	30.42	72.59
30	E13a_E15a	NovelJunction	0	1.90	2.65	6.34	9.08	1.15	4.85	0.67
31	ER14a	ExonRegion	0	58.10	56.42	77.86	70.69	55.05	26.93	41.02
32	E14a_E15a	KnownJunction	0	46.78	44.77	50.64	74.93	37.25	24.90	24.76
33	ER15a	ExonRegion	0	35.98	24.87	33.84	33.29	34.12	13.58	17.87
34	E15a_E16a	KnownJunction	0	60.50	58.03	56.89	45.97	72.50	22.89	34.25
35	ER16a	ExonRegion	0	114.74	77.04	130.89	72.31	70.64	31.71	44.23
36	E16a_E17a	KnownJunction	0	131.63	82.78	146.46	87.99	99.31	40.95	48.68
37	ER17a	ExonRegion	0	121.18	60.06	151.11	64.36	107.97	34.78	50.46
38	E17a_E18a	KnownJunction	0	116.83	42.61	159.07	85.20	123.22	38.91	44.05
39	ER18a	ExonRegion	0	115.29	62.30	152.43	80.04	103.67	37.23	42.71
40	E18a_E19a	KnownJunction	0	93.13	69.80	124.69	97.18	85.09	36.39	33.88
41	ER19a	ExonRegion	0	65.57	59.85	102.22	94.26	91.07	37.11	39.16
42	E19a_E20a	KnownJunction	0	51.42	48.65	82.33	83.93	64.92	35.30	44.50
43	ER20a	ExonRegion	0	55.53	75.86	78.41	98.09	77.94	44.36	53.86
44	E20a_E21a	KnownJunction	0	54.33	70.20	59.95	89.54	31.44	45.85	34.41
45	ER21a	ExonRegion	0	67.08	68.81	91.52	93.53	88.79	49.77	56.01
46	E21a_E22a	KnownJunction	0	116.16	69.67	140.94	109.94	63.86	62.55	61.47
47	ER22a	ExonRegion	0	83.56	80.36	129.85	105.43	86.61	57.53	66.90
48	E22a_E23a	KnownJunction	0	102.36	66.26	134.43	83.20	130.36	68.04	60.41
49	ER23a	ExonRegion	0	52.93	45.30	72.34	55.76	56.50	29.11	31.24
50	E23a_E24a	KnownJunction	0	38.89	29.92	55.97	57.95	45.71	21.49	27.43
51	ER24a	ExonRegion	0	47.04	40.49	71.24	59.75	39.77	20.37	27.17
52	E24a_E25a	KnownJunction	1	42.06	35.81	78.99	41.83	48.16	18.44	14.25
53	ER25a	ExonRegion	0	41.35	44.85	77.81	56.69	41.97	29.29	33.54
54	E25a_E26a	KnownJunction	0	55.03	37.10	75.27	69.24	60.91	37.28	45.72
55	ER26a	ExonRegion	0	63.99	59.84	97.78	82.95	69.26	38.75	49.11
56	E26a_E27a	KnownJunction	0	57.96	69.30	124.12	93.46	119.55	53.57	36.99
57	ER27a	ExonRegion	0	61.62	61.41	101.67	81.55	91.86	36.27	47.38
58	E27a_E28a	KnownJunction	0	81.06	39.85	125.61	58.92	52.45	32.40	44.47
59	ER28a	ExonRegion	0	133.45	49.45	168.96	73.40	114.30	27.62	61.92
60	E28a_E29a	KnownJunction	0	201.55	64.71	205.90	86.15	137.30	33.63	62.81
61	ER29a	ExonRegion	0	191.69	62.62	230.24	82.29	129.02	49.05	65.00
62	E29a_E30a	KnownJunction	1	200.65	60.69	214.53	59.11	144.89	30.44	54.47
63	ER30a	ExonRegion	0	117.75	41.91	139.89	57.41	101.20	29.59	50.03
64	E30a_E31a	KnownJunction	0	55.38	30.58	75.33	50.69	63.72	23.32	38.68
65	ER31a	ExonRegion	0	59.74	42.78	92.69	56.35	63.91	29.64	40.43
66	E31a_E32a	KnownJunction	0	3.04	5.41	7.03	0.00	0.00	0.00	2.54
67	E31a_E33a	KnownJunction	0	46.56	37.23	102.09	55.35	90.83	28.11	36.17
68	ER32a	ExonRegion	0	4.30	4.70	5.56	1.45	1.68	0.02	2.72
69	E32a_E33a	KnownJunction	0	3.40	7.07	2.39	3.82	2.14	0.00	2.48
70	ER33a	ExonRegion	0	55.17	44.64	100.18	67.59	68.94	31.85	40.12
71	E33a_E34a	KnownJunction	0	45.45	41.54	67.94	54.07	43.57	19.22	31.11
72	ER34a	ExonRegion	0	42.05	43.17	76.55	55.65	48.80	26.07	36.97
73	E34a_E35a	KnownJunction	0	61.79	34.00	96.70	58.27	53.39	36.05	41.88
74	ER35a	ExonRegion	0	39.24	37.09	60.62	46.08	41.35	24.59	34.52
75	E35a_E36a	KnownJunction	0	46.13	41.90	57.90	62.31	41.50	23.61	23.13
76	ER36a	ExonRegion	0	69.36	54.43	107.70	70.95	74.72	39.59	43.77
77	E36a_E37a	KnownJunction	0	116.61	51.68	175.32	95.74	105.79	55.15	53.50
78	ER37a	ExonRegion	0	127.16	63.47	213.89	116.95	125.73	59.62	65.43
79	E37a_E38a	KnownJunction	0	132.18	42.72	218.40	102.86	160.15	35.72	56.21
80	ER38a	ExonRegion	0	93.23	61.59	158.95	102.24	113.04	40.94	61.96
81	E38a_E39a	KnownJunction	0	64.74	55.85	109.82	89.81	133.98	39.82	49.43
82	ER39a	ExonRegion	0	71.38	67.49	99.03	89.91	94.66	43.49	52.50
83	E39a_E40a	KnownJunction	0	63.99	55.17	96.99	74.04	82.25	25.94	54.75
84	ER40a	ExonRegion	0	44.09	51.60	59.23	77.86	67.55	30.73	40.49
85	E40a_E41a	KnownJunction	0	53.37	44.50	68.85	79.86	77.78	23.29	58.79
86	ER41a	ExonRegion	0	59.96	53.38	70.98	85.15	77.29	32.17	37.19
87	E41a_E42a	KnownJunction	0	108.90	76.61	127.03	97.93	140.28	37.76	54.92
88	ER42a	ExonRegion	0	116.49	78.33	154.35	115.62	108.93	41.77	52.33
89	E42a_E43a	KnownJunction	0	61.22	60.95	101.64	91.60	86.17	35.16	35.76
90	E42a_E44a	NovelJunction	0	5.69	1.00	0.69	10.38	1.06	7.58	1.20
91	ER43a	ExonRegion	0	83.96	63.61	118.95	89.44	124.57	31.75	45.37
92	E43a_E44a	KnownJunction	0	64.04	61.95	111.90	86.80	121.53	33.31	40.53
93	ER44a	ExonRegion	0	46.96	67.71	105.42	92.64	95.68	40.21	52.27
94	E44a_E45a	KnownJunction	0	40.69	49.63	89.90	96.85	102.68	49.53	55.33
95	ER45a	ExonRegion	0	70.47	61.19	139.68	107.36	133.26	46.70	65.43
96	E45a_E46a	KnownJunction	0	70.15	57.11	138.65	99.80	87.85	42.83	56.11
97	ER46a	ExonRegion	0	85.15	60.80	129.80	112.61	122.81	46.36	57.84
98	E46a_E47a	KnownJunction	0	91.96	67.33	168.35	114.73	166.37	59.60	60.55
99	ER47a	ExonRegion	0	81.74	62.03	117.11	95.91	129.43	36.42	57.13
100	E47a_E48a	KnownJunction	0	90.96	61.16	111.53	80.08	118.21	38.78	56.21
101	ER48a	ExonRegion	0	154.21	65.09	184.58	126.93	161.68	50.90	66.72
102	E48a_E49a	KnownJunction	0	161.63	76.55	220.14	131.34	159.43	56.65	63.36
103	ER49a	ExonRegion	0	175.85	64.41	218.52	111.80	170.83	58.60	60.01
104	E49a_E50a	KnownJunction	0	108.80	56.14	154.57	84.96	138.64	57.62	56.75
105	E50_Aa	NovelBoundary	1	43.24	3.26	64.90	0.00	0.00	0.00	4.20
106	ER50a	ExonRegion	0	71.88	68.50	122.25	92.45	109.09	54.34	63.26
107	E50a_E51a	KnownJunction	0	56.20	79.55	105.58	87.67	104.66	50.28	62.17
108	ER51a	ExonRegion	0	76.53	59.40	106.18	91.15	107.19	54.21	55.85
109	E51a_E52a	KnownJunction	0	115.24	91.29	155.01	108.77	158.76	59.52	84.24
110	ER52a	ExonRegion	0	134.93	93.49	173.34	123.87	164.00	64.43	73.70
111	E52a_E53a	KnownJunction	0	110.17	76.24	148.88	126.57	136.54	49.90	69.21
112	ER53a	ExonRegion	0	105.72	68.66	142.47	104.95	156.64	49.84	68.95
113	E53a_E54a	KnownJunction	0	72.77	66.10	99.73	86.47	150.33	54.73	52.20
114	ER54a	ExonRegion	0	71.07	64.71	102.89	89.49	119.80	45.20	60.19
115	E54a_E55a	KnownJunction	0	75.64	57.59	107.75	70.22	103.02	39.18	38.88
116	ER55a	ExonRegion	0	94.11	69.66	158.36	92.08	135.32	56.21	64.87
117	E55a_E56a	KnownJunction	0	154.05	96.76	234.73	124.94	112.82	65.98	94.56
118	ER56a	ExonRegion	0	116.12	102.87	180.93	125.53	145.69	65.66	81.94
119	E56a_E57a	KnownJunction	0	87.46	86.51	152.90	158.21	92.51	69.87	73.86
120	ER57a	ExonRegion	0	81.56	87.17	125.08	97.81	124.85	46.68	63.55
121	E57a_E58a	KnownJunction	0	63.10	67.78	78.16	81.11	99.66	50.73	40.60
122	ER58a	ExonRegion	0	35.52	48.24	57.96	56.51	90.90	26.10	33.62
123	E58a_E59a	KnownJunction	0	45.15	39.59	57.29	58.11	118.68	16.29	44.14
124	ER59a	ExonRegion	0	96.74	65.73	125.21	93.62	168.48	45.82	74.98
125	E59_Da	KnownBoundary	0	49.55	22.62	54.12	28.20	43.18	15.52	18.47
126	E59a_E60a	KnownJunction	0	83.92	44.00	130.12	104.06	167.48	40.84	70.88
127	ER59b	ExonRegion	0	51.39	25.70	68.37	27.32	56.15	13.52	19.30
128	E59b_E60a	KnownJunction	0	55.21	29.92	78.79	28.31	66.88	12.06	21.86
129	ER60a	ExonRegion	0	191.53	75.51	270.97	126.41	280.38	68.84	92.62
130	E60a_E61a	KnownJunction	0	162.54	66.81	244.64	110.83	294.71	50.62	76.19
131	ER61a	ExonRegion	0	131.87	63.29	219.22	100.58	230.62	56.60	84.00
132	E61a_E62a	KnownJunction	0	105.88	53.62	156.98	97.26	187.35	65.93	88.42
133	ER62a	ExonRegion	0	115.15	77.41	156.42	123.78	205.62	58.33	83.49
134	E62a_E63a	KnownJunction	0	172.21	96.10	202.18	144.23	250.24	73.57	93.81
135	ER63a	ExonRegion	0	124.24	79.78	160.09	119.87	257.13	76.73	82.48
136	E63a_E64a	KnownJunction	0	193.14	88.04	210.01	133.72	482.66	75.36	90.53
137	I63_SR2	SilentIntronRegion	1	18.96	5.22	11.35	5.97	2.96	7.26	11.27
138	ER64a	ExonRegion	0	177.75	66.22	187.67	127.48	266.07	48.37	77.13
139	E64a_E65a	KnownJunction	0	20.55	14.29	29.17	23.08	29.23	5.82	13.79
140	I64_AR1	ActiveIntronRegion	0	1.75	2.38	4.08	1.53	44.27	0.32	2.91
141	E65_Aa	NovelBoundary	0	131.12	68.04	157.07	109.72	204.36	78.66	72.07
142	ER65a	ExonRegion	0	165.97	68.51	180.41	99.72	285.66	59.32	66.16
143	E65a_E66a	KnownJunction	0	157.10	62.63	223.24	81.16	222.74	74.26	66.07
144	ER66a	ExonRegion	0	138.05	65.47	177.31	101.32	192.28	69.14	65.61
145	E66a_E67a	KnownJunction	1	164.38	47.26	193.50	69.73	223.89	52.18	43.07
146	E67_Aa	NovelBoundary	1	33.40	6.49	14.54	7.50	1.06	15.28	16.84
147	ER67a	ExonRegion	0	241.90	66.55	304.05	143.63	254.76	114.63	88.26
148	E67_Da	NovelBoundary	1	17.81	12.85	7.75	13.98	1.18	8.68	17.21
149	E67a_E68a	KnownJunction	0	161.34	63.39	213.89	102.32	216.54	52.85	68.83
150	I67	Intron	1	30.09	10.57	14.57	14.15	1.79	9.11	25.97
151	I67_SR1	SilentIntronRegion	1	30.21	10.61	14.63	14.21	1.79	9.14	26.08
152	E68_Aa	NovelBoundary	1	5.27	13.48	6.80	15.98	1.15	8.52	16.48
153	ER68a	ExonRegion	0	111.57	65.77	154.16	121.29	164.27	70.71	73.82
154	E68_Da	NovelBoundary	1	11.15	12.61	5.82	14.68	1.18	1.31	23.36
155	E68a_E69a	KnownJunction	0	64.87	52.60	135.64	113.29	171.03	80.94	64.35
156	I68	Intron	1	16.87	10.40	10.41	13.54	2.86	8.48	19.54
157	I68_SR1	SilentIntronRegion	1	11.89	5.13	4.16	7.84	0.84	1.26	14.47
158	I68_AR1	ActiveIntronRegion	1	21.36	12.10	13.56	15.27	3.30	10.81	22.71
159	I68_SR2	SilentIntronRegion	1	10.15	8.77	6.46	12.01	2.61	6.26	15.25
160	ER69a	ExonRegion	0	77.43	68.94	108.65	118.55	164.95	73.41	73.02
161	E69_Da	NovelBoundary	0	8.73	9.14	2.79	7.07	4.47	16.80	10.55
162	E69a_E70a	KnownJunction	0	39.44	47.03	66.39	72.79	148.69	50.87	50.20
163	I69	Intron	1	24.14	20.85	14.96	23.23	5.50	20.41	31.22
164	I69_SR1	SilentIntronRegion	1	24.20	20.91	14.99	23.29	5.51	20.46	31.30
165	E70_Aa	NovelBoundary	1	23.30	25.27	13.59	16.09	7.75	11.36	32.22
166	ER70a	ExonRegion	0	103.02	102.71	150.15	143.05	246.37	103.05	104.78
167	E70_Da	NovelBoundary	1	15.40	18.05	13.15	9.35	4.29	17.31	26.86
168	E70a_E71a	KnownJunction	0	90.86	91.74	127.13	114.22	232.17	89.89	71.67
169	E71_Aa	NovelBoundary	1	5.76	14.79	5.55	14.41	1.18	4.31	16.21
170	ER71a	ExonRegion	0	167.61	97.48	194.39	158.92	279.91	113.38	104.86
171	E71_Da	NovelBoundary	0	53.34	18.68	55.60	16.20	0.00	10.80	15.29
172	E71a_E72a	KnownJunction	0	152.28	63.50	162.83	103.92	227.74	106.40	69.71
173	E72_Aa	NovelBoundary	0	7.28	9.72	3.12	13.49	0.00	15.65	14.13
174	ER72a	ExonRegion	0	96.79	62.95	119.74	93.65	114.44	85.74	55.40