Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C7orf63	Gene	0	21.33	26.85	38.28	20.08	10.79	75.15	2.75
2	316089	Transcript	0	6.58	3.82	11.28	4.47	0.59	20.11	0.86
3	389297	Transcript	0	25.30	30.78	39.33	17.72	12.03	93.74	3.91
4	ER1a	ExonRegion	0	0.00	0.20	1.92	5.20	0.00	4.29	0.22
5	ER1b	ExonRegion	0	3.87	16.09	8.66	14.75	0.83	33.90	1.24
6	E1a_E2a	KnownJunction	0	9.35	25.14	11.07	12.95	2.03	42.69	1.63
7	ER2a	ExonRegion	0	9.17	24.30	15.15	10.60	3.79	44.83	2.32
8	E2_Da	NovelBoundary	0	3.29	10.11	11.15	6.04	0.00	9.67	0.00
9	E2a_E3a	KnownJunction	0	5.97	25.59	19.26	11.76	3.16	44.68	1.91
10	E2a_E6a	NovelJunction	1	3.02	3.78	8.75	0.00	0.00	15.12	0.00
11	E2a_E7a	NovelJunction	0	0.00	1.50	2.18	4.33	0.00	8.63	0.00
12	ER3a	ExonRegion	0	9.13	21.55	29.21	11.69	1.88	43.97	0.74
13	E3a_E4a	KnownJunction	0	8.31	18.23	27.27	8.91	2.01	53.44	0.89
14	E4_Aa	NovelBoundary	0	9.78	0.00	4.83	0.00	0.00	0.00	0.00
15	ER4a	ExonRegion	0	9.14	13.53	25.48	5.11	4.09	43.90	1.86
16	E4_Da	NovelBoundary	0	12.63	9.01	11.15	1.16	2.33	2.09	0.00
17	E4a_E5a	KnownJunction	1	8.13	6.86	18.81	1.68	1.04	31.92	0.89
18	E4a_E6a	NovelJunction	1	2.42	1.00	14.83	3.47	0.00	9.81	0.00
19	ER5a	ExonRegion	1	4.43	7.12	19.28	3.81	5.29	26.37	2.33
20	E5a_E6a	KnownJunction	1	5.46	1.31	18.90	6.88	6.50	32.05	1.75
21	I5	Intron	0	11.35	6.98	8.98	2.06	3.04	4.44	0.39
22	I5_SR1	SilentIntronRegion	0	11.18	7.22	9.07	2.10	2.77	4.32	0.39
23	I5_AR1	ActiveIntronRegion	0	13.31	4.40	8.15	1.69	5.96	5.79	0.41
24	E6_Aa	NovelBoundary	0	17.21	4.60	7.99	4.31	8.30	5.20	0.60
25	ER6a	ExonRegion	0	21.64	10.30	34.18	9.69	12.20	50.36	2.96
26	E6_Da	NovelBoundary	0	23.32	17.42	17.56	10.46	3.18	21.47	0.83
27	E6a_E7a	KnownJunction	0	11.90	5.81	33.51	3.77	7.56	30.07	5.68
28	I6	Intron	0	11.74	7.87	12.28	3.04	2.80	10.39	0.81
29	I6_AR1	ActiveIntronRegion	0	12.31	7.65	12.29	2.62	1.80	9.88	1.04
30	I6_SR1	SilentIntronRegion	0	12.13	8.80	13.07	3.88	3.35	11.48	0.80
31	E7_Aa	NovelBoundary	0	14.82	14.08	8.45	8.70	3.25	9.54	0.62
32	ER7a	ExonRegion	0	18.45	26.53	47.27	16.41	13.04	69.82	4.64
33	E7a_E8a	KnownJunction	1	8.43	36.25	33.43	22.62	8.67	51.19	8.48
34	ER8a	ExonRegion	0	13.06	27.19	41.83	20.81	12.76	67.43	3.46
35	E8_Da	NovelBoundary	0	11.18	6.38	16.35	5.42	0.00	12.25	0.00
36	E8a_E9a	KnownJunction	0	9.13	12.90	28.17	11.62	4.84	60.51	1.62
37	E9_Aa	NovelBoundary	0	9.01	5.73	17.09	6.50	2.31	8.95	0.00
38	ER9a	ExonRegion	0	32.26	23.03	52.93	17.91	15.73	75.34	2.25
39	E9a_E10a	KnownJunction	0	41.19	26.56	63.10	15.52	24.02	96.24	4.83
40	E10_Aa	NovelBoundary	0	13.85	0.00	6.81	3.33	0.00	8.12	0.86
41	ER10a	ExonRegion	0	46.92	24.82	75.02	24.07	17.82	98.30	3.39
42	E10a_E11a	KnownJunction	0	43.59	21.46	69.60	28.36	17.59	81.66	2.38
43	ER11a	ExonRegion	0	41.50	31.77	72.65	26.23	19.03	83.09	4.31
44	E11a_E12a	KnownJunction	0	33.98	36.65	57.57	22.46	13.35	72.44	2.61
45	E12_Aa	NovelBoundary	0	10.51	0.00	24.03	1.22	0.00	0.00	0.00
46	ER12a	ExonRegion	0	28.52	45.59	54.79	30.52	13.19	95.89	4.60
47	E12a_E13a	KnownJunction	0	24.75	53.02	46.34	38.28	11.99	77.48	2.97
48	ER13a	ExonRegion	0	26.49	46.39	46.86	27.80	17.18	101.10	4.75
49	E13a_E14a	KnownJunction	0	24.48	28.79	38.83	26.28	11.99	69.73	0.00
50	E13a_E15a	NovelJunction	1	4.39	6.23	11.77	3.71	0.00	52.50	0.00
51	ER14a	ExonRegion	0	19.58	31.42	48.66	22.75	22.19	59.73	3.15
52	E14_Da	NovelBoundary	0	20.90	10.56	28.30	3.36	1.15	4.05	0.89
53	E14a_E15a	KnownJunction	0	22.63	26.27	51.16	17.58	21.97	70.22	3.20
54	I14_AR2	ActiveIntronRegion	0	8.29	1.86	15.11	0.83	1.55	10.08	0.00
55	I14_SR2	SilentIntronRegion	0	9.63	4.37	10.13	0.58	1.59	4.22	0.00
56	E15_Aa	NovelBoundary	0	8.48	5.73	14.07	3.96	1.04	4.37	0.87
57	ER15a	ExonRegion	0	31.38	33.67	64.24	30.07	21.37	105.85	4.57
58	E15_Da	NovelBoundary	0	10.51	0.00	7.66	3.25	0.00	0.00	0.00
59	E15a_E16a	KnownJunction	0	30.19	29.48	63.92	35.27	24.74	118.88	5.16
60	E16_Aa	NovelBoundary	0	17.04	4.31	16.51	2.84	0.00	6.27	0.00
61	ER16a	ExonRegion	0	31.31	26.65	58.42	28.70	28.48	108.37	6.49
62	E16_Da	NovelBoundary	0	7.91	2.57	15.71	1.68	0.00	0.99	1.63
63	E16a_E17a	KnownJunction	0	21.93	11.93	39.79	25.01	15.75	57.46	3.87
64	ER17a	ExonRegion	0	32.17	33.56	53.49	26.25	17.33	98.45	6.56
65	E17a_E18a	KnownJunction	0	31.84	43.40	45.73	23.84	14.20	107.04	7.82
66	E17a_E19a	KnownJunction	0	13.15	7.43	20.65	3.74	1.18	35.94	1.49
67	E18_Aa	NovelBoundary	0	16.92	1.21	10.76	1.22	2.14	7.34	0.89
68	ER18a	ExonRegion	0	34.61	38.84	55.27	22.22	15.75	129.04	3.64
69	E18a_E19a	KnownJunction	1	24.55	28.77	40.01	11.59	14.34	101.95	3.57
70	ER19a	ExonRegion	0	34.68	27.74	50.31	12.79	14.98	89.21	2.76
71	E19a_E20a	KnownJunction	0	36.88	14.03	36.70	7.37	11.78	61.96	0.60
72	E19a_E21a	NovelJunction	0	2.75	6.88	9.38	3.98	2.21	28.43	0.77
73	ER20a	ExonRegion	0	48.52	33.07	56.86	24.72	12.23	110.07	1.52
74	E20a_E21a	KnownJunction	0	51.89	43.45	70.23	41.69	15.91	158.07	1.09
75	ER21a	ExonRegion	0	40.97	51.23	56.32	42.65	18.32	173.46	2.45
76	E21a_E22a	KnownJunction	0	36.28	50.65	49.53	40.88	13.16	170.98	3.00
77	E21a_E23a	NovelJunction	0	6.76	2.60	14.53	7.40	4.36	11.60	1.48
78	ER22a	ExonRegion	0	32.15	65.06	58.04	42.92	12.15	180.60	3.53
79	E22a_E23a	KnownJunction	0	15.71	41.51	27.10	27.74	8.97	167.23	3.05
80	ER23a	ExonRegion	0	11.80	27.32	25.33	18.40	5.86	80.09	1.83
81	E23_Da	KnownBoundary	0	5.59	0.00	12.76	1.16	1.18	7.75	0.00
82	ER23b	ExonRegion	0	10.18	12.13	16.31	13.24	3.84	36.93	0.59
83	IG19	Intergenic	0	4.20	4.84	4.74	6.41	0.09	15.09	0.13
84	IG19_SR1	SilentIntergenicRegion	0	8.56	9.55	16.23	11.84	0.62	23.17	0.33
85	IG19_AR1	ActiveIntergenicRegion	0	8.22	10.30	11.32	12.89	0.41	28.90	0.57
86	IG19_AR2	ActiveIntergenicRegion	0	12.98	3.38	4.72	4.54	0.26	11.13	0.00
87	IG19_AR3	ActiveIntergenicRegion	0	6.24	4.94	5.27	6.60	0.00	29.25	0.00
88	IG19_SR4	SilentIntergenicRegion	0	11.90	7.37	5.79	8.93	0.00	26.18	0.00
89	IG19_AR4	ActiveIntergenicRegion	0	6.83	9.59	6.35	9.62	0.00	27.64	0.00
90	IG19_SR5	SilentIntergenicRegion	0	4.07	7.99	3.18	10.30	0.00	18.01	0.05
91	IG19_AR5	ActiveIntergenicRegion	0	3.59	13.06	5.65	16.97	0.00	30.30	0.17
92	IG19_SR6	SilentIntergenicRegion	0	3.67	13.53	8.90	18.17	0.00	39.22	0.46
93	IG19_AR6	ActiveIntergenicRegion	0	6.05	12.76	10.64	14.49	0.00	30.67	0.65
94	IG19_SR7	SilentIntergenicRegion	0	5.56	7.67	7.83	11.30	0.00	32.66	0.18
95	IG19_AR10	ActiveIntergenicRegion	0	1.38	2.63	4.08	2.05	0.00	8.43	0.00