Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ASL	Gene	0	46.21	44.14	27.75	29.11	63.64	29.67	124.67
2	304874	Transcript	0	0.27	0.00	0.09	0.23	0.92	0.11	0.05
3	362000	Transcript	0	0	0	0	0	0	0	0
4	380839	Transcript	0	12.38	3.44	5.04	7.48	12.96	2.71	22.13
5	395331	Transcript	0	4.84	1.52	3.89	2.68	5.79	0.00	1.78
6	395332	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.27	0.00	0.09	0.23	0.92	0.11	0.05
8	E1a_E1d	KnownJunction	0	31.58	5.81	17.19	4.85	135.34	1.66	58.69
9	ER1b	ExonRegion	0	6.92	1.13	3.82	3.56	26.32	1.23	26.55
10	ER1c	ExonRegion	0	30.28	4.78	15.58	8.40	92.97	3.02	49.92
11	ER1d	ExonRegion	0	9.50	10.43	4.01	15.84	4.70	9.73	12.92
12	E1_Ad	KnownBoundary	0	14.29	28.08	9.50	39.04	4.33	26.34	14.15
13	ER1e	ExonRegion	0	59.03	26.41	37.28	29.44	124.63	16.91	98.17
14	E1b_E2a	KnownJunction	0	36.52	19.47	29.86	12.81	21.83	9.78	80.97
15	E1b_E3a	NovelJunction	0	15.44	18.57	7.80	21.48	4.03	18.30	12.68
16	I1	Intron	0	4.69	6.06	3.01	8.14	4.52	9.09	4.07
17	I1_AR1	ActiveIntronRegion	0	4.68	7.82	3.91	12.41	1.24	16.86	3.83
18	I1_SR1	SilentIntronRegion	0	3.51	5.10	3.04	6.33	5.25	8.43	3.43
19	I1_SR2	SilentIntronRegion	0	7.60	6.36	3.93	8.94	5.96	8.54	5.27
20	I1_AR3	ActiveIntronRegion	0	6.43	9.89	3.06	11.08	3.21	12.18	6.20
21	E2_Aa	NovelBoundary	0	11.57	8.04	2.01	18.53	3.53	10.48	12.25
22	ER2a	ExonRegion	0	54.06	49.12	28.83	27.26	70.51	33.95	130.30
23	E2_Da	NovelBoundary	1	4.79	3.89	6.84	17.47	0.00	18.47	3.21
24	E2a_E3a	KnownJunction	0	61.20	48.79	29.44	26.33	179.40	40.25	171.03
25	I2	Intron	0	1.89	3.49	0.93	7.43	0.22	8.28	1.24
26	I2_SR1	SilentIntronRegion	0	1.91	3.52	0.94	7.49	0.23	8.34	1.25
27	E3_Aa	NovelBoundary	1	1.69	1.08	0.00	10.67	0.00	11.93	1.28
28	ER3a	ExonRegion	0	50.47	70.36	29.94	38.02	81.15	41.71	178.89
29	E3_Da	NovelBoundary	1	0.72	2.92	5.93	16.88	1.18	13.43	0.89
30	E3a_E4a	KnownJunction	0	55.26	67.60	37.32	30.15	41.03	38.08	157.80
31	E3a_E10a	NovelJunction	1	0.72	0.00	1.54	9.56	0.00	9.19	0.00
32	I3_AR1	ActiveIntronRegion	1	3.32	0.95	0.47	9.92	0.00	4.97	1.04
33	E4_Aa	NovelBoundary	1	0.95	1.63	0.72	10.02	0.00	16.99	1.36
34	ER4a	ExonRegion	0	45.50	70.70	30.19	31.81	65.56	39.32	165.09
35	E4_Da	NovelBoundary	0	8.14	12.72	4.58	14.85	3.11	10.24	2.21
36	E4a_E5a	KnownJunction	0	62.14	72.35	34.56	29.34	99.91	36.72	213.47
37	E4a_E6a	NovelJunction	0	1.03	8.43	0.86	1.54	0.00	3.24	4.18
38	E5_Aa	NovelBoundary	1	5.72	9.83	1.25	15.93	0.00	24.23	3.31
39	ER5a	ExonRegion	0	61.29	58.34	42.27	40.16	107.05	46.75	215.65
40	E5_Da	NovelBoundary	0	8.83	11.14	2.41	13.79	3.18	16.67	5.53
41	E5a_E6a	KnownJunction	0	53.26	44.53	32.85	23.62	104.98	36.80	199.05
42	E5a_E10a	NovelJunction	0	0.00	6.52	1.25	11.92	0.00	11.42	0.54
43	I5	Intron	0	5.54	7.37	6.00	14.30	5.13	13.56	6.42
44	I5_AR1	ActiveIntronRegion	0	3.77	8.15	2.42	12.12	2.38	3.71	3.61
45	I5_SR1	SilentIntronRegion	0	5.99	7.19	6.90	14.87	5.83	16.03	7.13
46	E6_Aa	NovelBoundary	1	4.94	6.83	4.70	16.09	3.18	18.47	4.93
47	ER6a	ExonRegion	0	50.16	46.87	29.34	23.58	81.20	29.27	188.25
48	E6_Da	NovelBoundary	0	7.63	19.39	7.26	10.65	5.81	13.67	7.93
49	E6a_E7a	KnownJunction	0	41.21	32.21	29.06	19.02	64.36	25.75	174.47
50	E6a_E8a	KnownJunction	0	12.38	3.44	5.04	7.48	12.96	2.71	22.13
51	E7_Aa	NovelBoundary	1	8.46	12.79	9.07	13.60	3.25	30.28	8.91
52	ER7a	ExonRegion	0	30.22	35.53	21.19	25.98	74.26	26.09	145.08
53	E7_Da	NovelBoundary	0	4.32	16.63	10.95	19.07	6.45	8.09	8.90
54	E7a_E8a	KnownJunction	0	33.81	29.42	20.18	19.34	106.90	18.87	151.47
55	I7	Intron	0	9.66	13.61	9.19	16.08	7.23	15.92	10.02
56	I7_AR1	ActiveIntronRegion	0	9.70	13.67	9.22	16.15	7.26	15.99	10.06
57	E8_Aa	NovelBoundary	0	10.77	17.81	7.92	21.16	11.64	17.04	9.69
58	ER8a	ExonRegion	0	65.40	50.82	42.05	21.76	118.64	32.62	237.47
59	E8_Da	NovelBoundary	0	27.22	29.37	14.87	28.42	19.23	28.14	25.44
60	E8a_E9a	KnownJunction	0	76.06	49.81	51.43	17.53	94.95	34.01	247.89
61	I8	Intron	1	15.31	20.19	12.16	18.80	7.06	13.07	11.47
62	I8_AR1	ActiveIntronRegion	1	15.40	20.29	12.22	18.90	7.10	13.14	11.53
63	E9_Aa	NovelBoundary	0	14.02	17.89	4.74	11.59	3.97	23.88	9.40
64	ER9a	ExonRegion	0	75.48	50.37	50.10	23.04	105.28	32.79	260.76
65	E9_Da	NovelBoundary	1	6.79	2.23	5.76	18.26	1.06	23.26	5.50
66	E9a_E10a	KnownJunction	0	55.93	56.61	35.11	35.19	102.86	35.21	239.36
67	I9_AR1	ActiveIntronRegion	0	4.23	4.92	3.83	8.97	0.49	12.65	3.31
68	E10_Aa	NovelBoundary	0	7.68	13.56	2.20	13.41	2.21	14.15	4.03
69	ER10a	ExonRegion	0	81.87	77.25	56.62	51.44	96.27	48.46	231.40
70	E10_Da	NovelBoundary	0	3.39	13.08	4.20	26.33	3.50	16.86	3.91
71	E10a_E11a	KnownJunction	0	112.57	81.68	90.36	56.70	146.06	54.22	295.80
72	E11_Aa	NovelBoundary	0	3.29	11.03	1.35	14.68	0.00	5.87	1.69
73	ER11a	ExonRegion	0	97.06	65.12	66.47	45.08	123.82	40.88	227.83
74	E11_Da	NovelBoundary	1	3.69	13.14	0.68	2.98	1.13	0.00	5.00
75	E11a_E12a	KnownJunction	0	114.28	51.86	52.11	31.18	123.91	35.38	218.44
76	E11a_E13a	KnownJunction	0	4.84	1.52	3.89	2.68	5.79	0.00	1.78
77	E12_Aa	NovelBoundary	0	11.08	11.82	4.56	9.37	4.40	8.76	16.32
78	ER12a	ExonRegion	0	97.21	59.08	50.27	30.53	117.56	40.78	210.07
79	E12a_E13a	KnownJunction	0	75.19	66.97	48.20	28.96	87.79	58.08	184.00
80	E13_Aa	NovelBoundary	0	4.26	9.69	3.41	4.63	0.00	13.88	3.30
81	ER13a	ExonRegion	0	90.43	80.34	56.71	51.48	111.02	49.46	217.66
82	E13_Da	NovelBoundary	1	3.35	0.00	0.86	13.57	1.01	15.17	2.09
83	E13a_E14a	KnownJunction	0	102.11	72.25	59.38	61.01	96.48	37.39	227.58
84	I13	Intron	0	3.59	3.29	2.34	8.84	0.62	10.75	1.61
85	I13_SR1	SilentIntronRegion	0	2.75	2.50	2.14	8.31	0.42	6.27	1.55
86	I13_SR2	SilentIntronRegion	1	5.85	5.43	3.28	12.02	1.10	20.68	2.15
87	E14_Aa	NovelBoundary	0	7.26	10.48	4.91	15.14	0.90	12.46	3.63
88	ER14a	ExonRegion	0	92.43	80.96	46.94	48.37	95.42	41.73	210.30
89	E14_Da	NovelBoundary	0	3.92	9.59	1.60	13.36	0.00	20.39	5.37
90	E14a_E15a	KnownJunction	0	57.66	79.81	35.32	35.16	88.52	28.09	166.16
91	E15_Aa	NovelBoundary	1	4.24	8.83	2.05	19.64	1.18	25.38	4.74
92	ER15a	ExonRegion	0	58.94	67.65	33.79	47.70	86.86	34.10	162.85
93	E15_Da	NovelBoundary	1	6.76	6.91	3.61	19.99	5.03	33.69	4.59
94	E15a_E16a	KnownJunction	1	48.08	50.99	24.95	26.09	66.53	14.69	135.40
95	I15	Intron	0	2.63	5.28	0.99	8.13	2.33	5.34	1.93
96	I15_SR1	SilentIntronRegion	0	2.68	5.38	1.01	8.25	2.37	5.43	1.96
97	E16_Aa	NovelBoundary	0	7.58	11.19	2.40	24.33	1.18	22.00	4.08
98	ER16a	ExonRegion	0	29.17	32.32	15.45	26.33	38.93	23.45	68.03
99	E16_Da	KnownBoundary	0	25.94	23.85	9.53	14.11	15.51	19.75	28.86
100	ER16b	ExonRegion	0	10.52	20.59	5.43	16.55	8.06	20.66	12.60
101	IG45	Intergenic	0	5.76	7.82	2.55	9.82	2.85	11.33	4.14
102	IG45_SR1	SilentIntergenicRegion	0	9.05	12.61	4.70	17.47	5.49	21.22	7.80