Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC073343.6	Gene	0	0.86	0.53	0.47	1.01	10.78	0.99	1.34
2	401847	Transcript	0	0.54	0.00	0.00	0.00	0.81	0.85	0.68
3	399484	Transcript	0	0.00	0.24	0.34	0.49	6.40	0.00	0.00
4	328239	Transcript	0	0.00	0.00	0.00	0.00	0.46	0.00	0.00
5	IG14_AR1	ActiveIntergenicRegion	0	42.12	83.37	51.31	119.08	20.25	130.85	52.94
6	IG14_SR1	SilentIntergenicRegion	0	2.04	2.84	3.33	9.25	2.64	18.76	6.41
7	IG14_AR5	ActiveIntergenicRegion	0	0.43	2.61	1.45	1.12	12.48	1.13	2.02
8	IG14_SR5	SilentIntergenicRegion	0	1.01	3.30	1.57	2.91	19.21	0.98	1.98
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1_Da	NovelBoundary	0	1.03	6.28	1.68	5.63	14.57	1.31	2.61
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	I1	Intron	0	0.00	0.00	0.00	0.00	11.07	0.00	1.30
13	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	11.31	0.00	1.31
14	E2_Aa	NovelBoundary	0	2.32	3.86	0.89	1.68	18.17	2.84	3.22
15	ER2a	ExonRegion	0	1.11	0.00	0.37	4.04	12.30	0.67	2.56
16	E2_Da	NovelBoundary	0	2.87	3.86	0.86	1.03	21.21	3.73	2.72
17	I2	Intron	0	0.55	1.74	0.47	1.79	16.91	0.00	1.40
18	I2_SR1	SilentIntronRegion	0	0.56	1.78	0.47	1.82	17.15	0.00	1.41
19	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	I3	Intron	0	1.29	0.00	0.00	0.00	8.81	1.54	0.85
22	I3_SR1	SilentIntronRegion	0	1.31	0.00	0.00	0.00	8.94	1.57	0.86
23	E4_Aa	NovelBoundary	0	1.55	2.73	0.88	1.35	24.07	0.00	2.06
24	ER4a	ExonRegion	0	0.59	1.55	0.00	1.38	8.77	0.00	0.88
25	E4_Ab	KnownBoundary	0	1.82	2.99	0.00	4.55	14.57	1.21	1.58
26	ER4b	ExonRegion	0	1.40	0.77	0.01	1.06	15.51	0.00	0.44
27	E4_Da	NovelBoundary	0	0.00	1.63	0.00	3.17	8.64	0.00	1.72
28	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E4b_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER4c	ExonRegion	0	0.00	0.00	0.00	0.00	2.28	0.00	0.00
31	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	12.56	1.47	0.85
32	ER5a	ExonRegion	0	0.57	0.00	0.99	0.00	2.08	0.00	0.50
33	E5_Da	NovelBoundary	0	0.00	1.23	0.00	0.00	9.82	1.29	2.09
34	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	I5	Intron	0	0.00	0.00	0.00	0.62	15.18	0.00	2.00
36	I5_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.62	15.34	0.00	2.02
37	E6_Aa	NovelBoundary	0	0.85	1.63	0.79	0.00	12.61	0.00	1.95
38	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	1.51	0.00	0.00
39	E6_Da	NovelBoundary	0	0.00	0.00	0.00	6.50	8.25	0.00	0.00
40	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	I6	Intron	0	0.00	0.00	0.00	0.00	8.46	0.00	0.00
42	I6_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	8.61	0.00	0.00
43	E7_Aa	NovelBoundary	0	0.00	0.00	0.89	0.00	14.50	0.00	2.01
44	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	1.42	0.00	0.67
45	ER7b	ExonRegion	0	0.00	0.00	0.00	0.00	1.38	0.00	0.51
46	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER8a	ExonRegion	0	0.00	0.85	0.00	2.78	10.12	5.18	0.00
49	E8_Da	KnownBoundary	0	0.68	1.16	0.00	3.22	17.22	0.00	2.55
50	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER8b	ExonRegion	0	0.00	0.48	0.00	0.98	8.39	0.00	0.00
52	E8_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	27.62	0.00	3.31
53	E8b_E9c	KnownJunction	0	0.00	0.00	0.69	0.00	4.40	0.00	0.00
54	E9_Aa	NovelBoundary	0	0.00	1.18	2.33	1.68	11.32	6.81	0.00
55	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E9a_E9d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER9b	ExonRegion	0	0.36	0.00	0.00	0.00	1.54	0.49	0.25
58	E9b_E9e	KnownJunction	0	0.85	0.00	0.00	0.00	0.00	1.31	1.36
59	ER9c	ExonRegion	0	0.77	0.00	0.00	0.00	2.43	1.23	0.67
60	ER9d	ExonRegion	0	0.77	0.00	0.00	0.00	2.43	1.23	0.67
61	ER9e	ExonRegion	0	0.77	0.00	0.68	0.00	2.70	1.23	0.67
62	ER9f	ExonRegion	0	0.26	0.00	0.68	0.00	1.62	0.41	0.22
63	ER9g	ExonRegion	0	0.52	0.00	0.61	0.00	10.70	0.86	1.12
64	E9_Dc	NovelBoundary	0	0.00	2.89	0.00	1.11	17.15	4.26	2.97
65	E9c_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	E10_Aa	NovelBoundary	0	1.62	0.00	0.00	0.00	17.75	0.00	2.01
67	ER10a	ExonRegion	0	1.69	1.00	0.98	0.52	18.88	1.52	2.64
68	IG15_AR1	ActiveIntergenicRegion	0	0.29	0.89	0.36	1.32	8.60	0.65	0.34