Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF12	Gene	0	39.26	61.90	61.70	56.59	60.89	73.22	51.29
2	342651	Transcript	0	0.06	1.21	0.00	0.67	0.62	0.09	0.78
3	394917	Transcript	0	0	0	0	0	0	0	0
4	405858	Transcript	0	0	0	0	0	0	0	0
5	404360	Transcript	0	1.94	3.47	0.99	1.49	0.87	1.92	0.55
6	399476	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	330442	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.06	1.21	0.00	0.67	0.62	0.09	0.78
9	ER1b	ExonRegion	0	4.43	17.42	3.64	13.76	2.66	20.09	6.02
10	E1a_E2a	KnownJunction	0	18.09	55.22	21.34	25.74	10.03	48.08	21.88
11	ER2a	ExonRegion	0	16.98	58.09	25.76	35.62	19.34	43.42	26.30
12	E2a_E7a	KnownJunction	0	15.77	53.33	22.96	38.52	23.88	41.78	31.62
13	I2	Intron	0	12.47	11.44	9.88	11.04	1.95	6.10	5.21
14	I2_SR1	SilentIntronRegion	0	13.61	14.30	10.31	14.18	2.25	8.22	6.33
15	I2_AR2	ActiveIntronRegion	0	16.18	19.13	13.36	21.04	2.90	12.38	8.19
16	I2_AR3	ActiveIntronRegion	1	14.67	8.85	14.39	13.34	1.59	3.99	3.62
17	I2_AR4	ActiveIntronRegion	0	13.12	11.66	10.05	10.46	2.37	5.29	6.74
18	I2_SR3	SilentIntronRegion	0	13.82	11.76	9.42	4.53	2.65	2.42	5.66
19	E3_Aa	NovelBoundary	1	16.66	13.40	18.45	12.11	2.97	7.24	4.04
20	ER3a	ExonRegion	0	3.88	5.61	1.99	2.97	1.75	2.32	1.09
21	E3a_E7a	KnownJunction	0	0.00	1.34	0.00	0.00	0.00	1.53	0.00
22	I3	Intron	0	13.55	8.56	8.76	6.46	2.43	4.13	3.47
23	I3_AR3	ActiveIntronRegion	1	14.60	11.74	4.74	7.69	3.37	7.76	1.91
24	I3_SR2	SilentIntronRegion	0	18.42	10.43	8.73	7.37	2.73	4.09	2.84
25	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E7_Aa	NovelBoundary	1	6.78	24.25	4.58	0.00	0.00	1.37	5.17
29	ER7a	ExonRegion	0	19.86	79.75	35.06	51.70	26.07	61.84	44.13
30	E7_Da	NovelBoundary	1	13.27	4.36	8.31	1.52	0.00	3.06	3.01
31	E7a_E8a	KnownJunction	0	25.27	104.93	46.49	67.10	47.42	101.84	58.44
32	ER8a	ExonRegion	0	26.82	103.87	52.20	67.71	39.22	76.15	54.43
33	E8_Da	NovelBoundary	1	7.04	16.95	2.90	1.44	0.00	3.32	5.82
34	E8a_E9a	KnownJunction	0	24.78	105.58	52.58	60.66	41.47	74.82	41.58
35	I8_AR2	ActiveIntronRegion	0	21.76	10.78	12.36	7.79	3.24	1.23	11.93
36	I8_AR3	ActiveIntronRegion	0	14.56	9.43	9.02	3.19	2.14	1.95	7.53
37	ER9a	ExonRegion	0	27.14	93.38	63.59	56.79	40.29	96.85	47.76
38	E9_Da	KnownBoundary	1	21.88	82.81	72.74	47.63	52.01	97.87	46.68
39	E9a_E9b	KnownJunction	1	0.60	0.00	5.95	16.47	0.00	8.82	1.46
40	ER9b	ExonRegion	0	40.78	65.83	72.31	56.11	45.18	71.23	44.88
41	E9_Ab	KnownBoundary	0	44.55	44.79	78.62	44.51	45.58	65.90	41.98
42	ER9c	ExonRegion	0	46.62	69.99	77.64	61.03	62.93	71.74	60.95
43	E9_Db	KnownBoundary	0	49.52	28.69	56.96	37.55	89.72	41.83	49.53
44	ER9d	ExonRegion	0	45.86	63.66	66.43	66.72	83.59	93.01	57.63
45	ER9e	ExonRegion	0	1.54	1.21	2.94	1.25	1.89	7.36	4.95
46	IG15_AR1	ActiveIntergenicRegion	0	0.29	0.89	0.36	1.32	8.60	0.65	0.34