Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CREB5	Gene	0	27.97	119.34	72.57	370.70	2.79	256.30	23.45
2	396299	Transcript	0	0.00	0.00	0.00	0.02	0.00	0.00	0.00
3	357727	Transcript	0	0	0	0	0	0	0	0
4	358569	Transcript	0	0	0	0	0	0	0	0
5	396300	Transcript	0	0.00	1.20	0.34	0.03	0.00	0.01	0.00
6	409603	Transcript	0	0.00	0.00	0.52	0.37	0.00	0.35	0.00
7	396298	Transcript	0	23.50	193.04	25.24	300.96	0.65	125.11	29.85
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.03	0.00	0.00	0.00
9	E1a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1_AR3	ActiveIntronRegion	1	23.60	62.70	45.22	180.50	0.14	242.40	0.97
11	I1_SR3	SilentIntronRegion	1	18.72	16.38	34.72	45.79	0.32	32.41	0.00
12	I1_AR4	ActiveIntronRegion	1	20.40	7.08	31.08	32.14	0.27	29.40	0.24
13	I1_SR4	SilentIntronRegion	1	16.53	5.87	34.53	33.15	0.00	27.20	0.27
14	I1_AR5	ActiveIntronRegion	1	13.37	4.09	19.96	25.00	0.00	15.23	0.21
15	E2_Aa	NovelBoundary	1	13.82	4.86	26.93	38.44	0.00	25.57	0.00
16	ER2a	ExonRegion	1	15.75	5.38	32.34	31.30	0.00	24.69	0.52
17	E2_Da	NovelBoundary	1	24.13	11.53	41.44	53.88	0.00	33.87	0.00
18	E2a_E4a	KnownJunction	1	0.63	0.00	7.82	20.67	0.00	23.64	0.00
19	I2_SR1	SilentIntronRegion	1	8.58	3.39	15.86	12.33	0.06	12.90	0.30
20	ER3a	ExonRegion	0	0.00	2.40	0.69	0.07	0.00	0.02	0.00
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER4a	ExonRegion	1	4.15	6.88	22.48	158.19	0.00	116.71	0.25
23	E4a_E6a	KnownJunction	1	4.62	11.69	31.59	222.23	0.00	220.80	0.83
24	E4a_E7a	NovelJunction	1	0.00	0.00	1.87	12.27	0.00	10.26	0.63
25	ER5a	ExonRegion	0	0.00	0.00	1.04	0.74	0.00	0.70	0.00
26	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	1	7.65	15.08	66.53	463.79	0.00	349.19	5.80
28	E6a_E7a	KnownJunction	1	8.80	15.00	93.82	542.26	0.00	407.33	7.32
29	E7_Aa	NovelBoundary	1	4.36	0.00	27.45	3.12	0.00	0.00	0.00
30	ER7a	ExonRegion	1	5.57	16.56	70.01	514.85	0.61	412.78	5.42
31	E7a_E8a	KnownJunction	1	7.48	14.08	64.52	485.91	0.95	457.53	4.50
32	E7a_E10a	NovelJunction	1	0.00	0.00	2.20	39.63	0.00	25.94	1.49
33	ER8a	ExonRegion	1	4.34	15.28	54.39	507.62	0.75	471.71	4.38
34	E8a_E10a	KnownJunction	1	3.97	9.69	70.87	513.81	0.00	467.79	5.63
35	ER9a	ExonRegion	0	15.00	103.82	16.84	156.19	0.44	64.10	15.27
36	E9_Da	NovelBoundary	1	21.55	47.42	48.49	89.75	0.00	50.92	5.09
37	E9a_E10a	KnownJunction	0	31.99	282.26	33.64	445.73	0.85	186.12	44.43
38	I9	Intron	0	6.61	13.17	18.25	24.95	0.11	15.88	1.62
39	I9_SR1	SilentIntronRegion	0	7.80	13.13	23.88	28.26	0.18	16.01	1.45
40	I9_AR1	ActiveIntronRegion	1	13.13	19.36	37.40	39.25	0.00	20.35	1.99
41	I9_SR2	SilentIntronRegion	0	9.39	17.95	23.16	31.78	0.19	19.20	1.83
42	I9_AR2	ActiveIntronRegion	0	5.68	16.91	20.52	32.48	0.00	14.27	1.73
43	I9_SR3	SilentIntronRegion	0	9.27	16.27	23.52	31.08	0.13	21.09	2.23
44	I9_AR4	ActiveIntronRegion	0	5.69	15.54	22.65	30.84	0.00	14.02	2.60
45	I9_AR5	ActiveIntronRegion	0	3.67	15.63	17.33	34.90	0.00	12.19	1.81
46	I9_SR4	SilentIntronRegion	0	4.77	13.12	15.78	26.46	0.09	18.82	1.66
47	I9_SR5	SilentIntronRegion	0	7.05	6.85	16.01	19.09	0.00	10.90	1.70
48	ER10a	ExonRegion	1	16.53	243.87	91.86	866.57	3.30	602.69	25.68
49	E10a_E11a	KnownJunction	1	20.04	390.76	125.05	1168.76	4.20	771.57	39.31
50	ER11a	ExonRegion	0	33.62	404.03	142.26	1310.51	4.61	860.59	53.65
51	E11a_E12a	KnownJunction	0	27.05	422.60	116.46	1290.11	3.02	871.72	62.71
52	I11_AR1	ActiveIntronRegion	0	11.61	25.66	17.21	49.75	0.03	30.44	3.71
53	I11_AR2	ActiveIntronRegion	0	18.40	34.16	31.78	43.97	0.00	30.83	4.01
54	I11_AR3	ActiveIntronRegion	0	13.64	23.64	18.70	27.07	0.00	24.72	1.85
55	I11_AR8	ActiveIntronRegion	0	12.72	20.75	9.57	41.88	0.49	17.38	2.96
56	ER12a	ExonRegion	0	20.04	324.65	75.84	1042.94	3.67	568.01	46.24
57	E12_Da	NovelBoundary	1	5.09	32.73	6.55	42.13	0.00	7.42	0.62
58	E12a_E13a	KnownJunction	0	14.79	167.06	44.29	564.69	1.13	327.81	25.51
59	ER13a	ExonRegion	0	15.57	148.61	48.97	452.45	1.04	273.05	17.81
60	E13_Da	NovelBoundary	1	14.24	54.88	10.03	58.90	0.00	38.91	1.25
61	E13a_E14a	KnownJunction	1	14.24	179.51	90.00	601.45	2.97	385.01	32.25
62	I13	Intron	0	16.72	34.50	19.98	44.12	0.44	21.35	2.69
63	I13_SR1	SilentIntronRegion	0	8.56	30.55	6.89	32.20	0.00	15.62	1.51
64	I13_AR1	ActiveIntronRegion	0	13.71	19.17	16.40	25.90	0.50	9.14	1.94
65	I13_SR2	SilentIntronRegion	0	7.33	24.38	15.47	31.40	0.42	13.98	1.12
66	I13_AR2	ActiveIntronRegion	0	12.65	37.55	17.73	48.62	0.52	23.40	2.88
67	I13_AR3	ActiveIntronRegion	1	22.35	41.47	23.04	60.32	0.28	22.80	3.00
68	I13_AR4	ActiveIntronRegion	0	12.23	10.02	11.80	19.64	0.00	3.58	1.35
69	I13_SR4	SilentIntronRegion	1	12.06	38.25	19.33	44.09	0.39	16.53	2.50
70	I13_AR5	ActiveIntronRegion	0	13.96	28.07	17.32	36.02	0.62	14.85	2.38
71	I13_SR5	SilentIntronRegion	1	19.18	34.45	23.38	42.47	0.51	15.47	3.29
72	I13_AR6	ActiveIntronRegion	0	18.03	32.83	18.90	41.07	0.38	22.16	3.02
73	I13_AR7	ActiveIntronRegion	0	14.87	17.56	17.95	35.26	0.00	17.22	1.13
74	I13_SR7	SilentIntronRegion	0	25.24	44.96	26.42	52.06	0.43	33.86	3.75
75	I13_AR8	ActiveIntronRegion	0	13.63	33.72	18.33	42.49	0.21	24.13	2.20
76	I13_SR8	SilentIntronRegion	0	10.01	24.45	18.97	36.77	0.20	20.28	2.82
77	I13_AR9	ActiveIntronRegion	1	32.91	64.96	33.12	83.93	0.86	43.98	3.69
78	I13_SR9	SilentIntronRegion	1	4.59	27.10	7.75	20.84	0.00	10.49	1.06
79	I13_AR10	ActiveIntronRegion	0	14.81	32.35	18.72	46.81	0.47	23.74	2.72
80	E14_Aa	NovelBoundary	1	29.16	57.88	29.53	76.72	0.00	31.17	4.33
81	ER14a	ExonRegion	0	29.99	235.88	94.13	718.91	3.50	439.02	33.23
82	E14_Da	NovelBoundary	1	48.20	58.27	38.10	71.49	0.00	19.14	2.15
83	E14a_E15a	KnownJunction	0	16.96	188.60	77.44	547.48	1.11	345.85	21.27
84	I14	Intron	1	19.82	41.55	18.16	52.42	0.32	18.81	2.18
85	I14_AR1	ActiveIntronRegion	1	20.78	30.49	14.23	46.02	0.42	10.10	1.50
86	I14_SR1	SilentIntronRegion	1	15.62	39.86	14.66	49.47	0.27	14.51	1.89
87	I14_AR2	ActiveIntronRegion	0	15.93	54.51	27.10	60.02	0.00	27.87	4.45
88	I14_SR2	SilentIntronRegion	1	29.57	50.98	26.80	64.55	0.43	30.14	2.98
89	E15_Aa	NovelBoundary	1	28.36	35.73	17.63	74.12	0.00	27.09	4.06
90	ER15a	ExonRegion	0	40.84	152.17	112.46	502.93	4.41	303.43	26.72
91	E15_Da	KnownBoundary	0	53.14	164.20	135.20	409.56	2.01	254.76	23.35
92	ER15b	ExonRegion	0	31.95	116.67	76.30	327.55	3.15	236.78	25.66
93	IG24_AR2	ActiveIntergenicRegion	0	0.87	0.17	3.85	1.66	35.01	6.28	0.00