Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CCR6	Gene	0	5.11	2.73	4.12	2.25	5.69	1.83	2.17
2	283506	Transcript	0	0.82	0.64	0.65	0.79	0.65	0.52	0.31
3	400926	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	341935	Transcript	0	0.00	0.00	0.00	0.00	0.18	0.00	0.16
5	349984	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.33	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.00	0.00	0.36	0.00	0.03	0.00	0.00
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	4.44	1.83	4.78	0.78	5.83	0.56	1.40
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	Ix_AR2	ActiveIntronRegion	0	5.99	4.31	8.64	4.60	20.82	3.34	4.02
13	ER4a	ExonRegion	0	1.18	0.00	0.62	0.00	0.08	1.88	0.00
14	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	Ix	Intron	0	8.26	1.78	5.96	1.32	23.56	0.50	3.97
16	Ix_AR1	ActiveIntronRegion	0	7.90	1.63	5.12	0.68	18.70	0.40	3.54
17	Ix_SR1	SilentIntronRegion	0	9.01	1.80	7.23	2.35	32.67	0.81	5.01
18	Ix_AR2	ActiveIntronRegion	0	8.28	3.41	8.48	2.79	28.74	0.00	3.13
19	Ix	Intron	0	10.53	2.74	8.20	2.36	36.54	1.39	8.44
20	Ix_SR1	SilentIntronRegion	0	3.49	1.91	2.81	1.25	20.81	0.00	2.35
21	Ix_AR2	ActiveIntronRegion	0	10.43	2.76	6.44	2.49	41.89	0.00	5.40
22	Ix_AR3	ActiveIntronRegion	0	13.95	2.62	9.66	2.74	38.64	0.81	7.74
23	Ix_SR2	SilentIntronRegion	0	10.80	2.76	8.56	2.19	43.48	1.59	11.45
24	Ix_AR5	ActiveIntronRegion	0	4.36	2.61	4.98	1.77	21.08	1.04	5.88
25	Ix_SR3	SilentIntronRegion	0	5.95	2.94	5.92	3.01	28.91	0.46	5.01
26	Ix_AR6	ActiveIntronRegion	0	6.94	1.48	5.97	1.34	22.35	0.88	5.84
27	Ix_SR6	SilentIntronRegion	0	8.09	2.13	5.87	1.46	27.88	1.44	8.07
28	Ix_AR14	ActiveIntronRegion	0	12.49	1.92	14.00	0.79	39.51	1.57	12.07
29	Ix_SR7	SilentIntronRegion	0	15.77	3.41	11.30	2.60	48.33	0.81	12.63
30	Ix_AR16	ActiveIntronRegion	0	15.10	3.94	9.40	3.66	52.35	3.12	9.36
31	ER5a	ExonRegion	0	1.44	1.55	0.29	1.74	0.87	0.48	0.70
32	E5a_E6a	KnownJunction	0	3.64	5.39	2.44	7.42	2.21	4.02	2.26
33	ER6a	ExonRegion	0	1.47	3.06	0.33	2.45	1.54	0.76	0.42
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER7a	ExonRegion	0	0.00	0.72	1.13	0.00	0.00	1.23	0.00
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER8a	ExonRegion	0	0.00	0.00	0.63	0.00	0.65	0.06	0.00
38	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER9a	ExonRegion	0	0.67	0.00	0.80	0.00	0.16	0.82	0.00
40	E9a_E10a	KnownJunction	0	2.02	0.00	0.89	0.00	0.00	1.13	0.00
41	I9	Intron	0	18.59	5.50	17.62	9.45	60.85	7.81	13.51
42	I9_AR1	ActiveIntronRegion	0	29.69	8.84	28.20	14.76	97.92	12.36	21.27
43	ER10a	ExonRegion	0	2.00	1.61	1.73	4.94	2.88	0.62	2.09
44	E10a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E11a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.21	0.00	0.00
48	ER12b	ExonRegion	0	0.00	0.00	0.00	0.00	0.61	0.00	0.00
49	E12_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E12a_E12c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER12c	ExonRegion	0	0.00	0.00	0.00	0.00	0.14	0.00	0.32
52	E12_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67
53	ER12d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.10
54	E12b_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER13a	ExonRegion	0	0.29	0.00	0.00	0.00	0.00	0.00	0.00
56	E13a_E14a	KnownJunction	0	0.93	0.00	0.00	0.00	0.00	0.00	0.00
57	ER14a	ExonRegion	0	0.96	1.43	1.58	0.00	0.99	0.00	0.48
58	E14a_E15a	KnownJunction	0	2.95	1.52	2.69	0.00	1.18	0.00	0.00
59	ER15a	ExonRegion	0	8.91	4.79	6.66	4.01	9.55	3.56	3.91
60	E15_Da	KnownBoundary	0	6.09	10.22	5.14	6.53	10.83	6.35	0.53
61	ER15b	ExonRegion	0	0.07	0.04	0.05	0.93	0.33	0.04	0.01
62	ER15c	ExonRegion	0	0.00	0.00	0.00	1.00	0.00	0.00	0.00