Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UTRN	Gene	0	76.00	18.77	27.23	25.39	121.36	22.15	42.97
2	367545	Transcript	0	64.62	13.40	23.63	22.93	80.85	16.04	35.50
3	367529	Transcript	0	0.00	0.02	0.53	0.00	0.91	0.48	1.99
4	367526	Transcript	0	0.21	0.32	0.00	0.00	19.40	0.00	0.18
5	367525	Transcript	0	12.71	2.02	0.58	1.11	28.99	1.46	0.00
6	367524	Transcript	0	0	0	0	0	0	0	0
7	367523	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	25.37	13.19	15.17	10.90	29.10	14.70	13.06
9	E1a_E3a	KnownJunction	0	34.03	20.81	17.65	17.58	46.41	14.10	19.52
10	ER2a	ExonRegion	0	0.00	0.04	1.07	0.00	0.78	0.95	1.87
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	2.12
12	ER3a	ExonRegion	0	51.98	27.92	26.09	22.00	45.74	14.85	35.84
13	E3a_E4a	KnownJunction	0	52.91	35.52	36.14	29.72	61.30	20.56	37.92
14	ER4a	ExonRegion	0	61.76	27.92	31.78	31.00	58.97	17.60	31.89
15	E4a_E5a	KnownJunction	1	72.58	29.00	24.85	30.61	76.58	11.98	36.83
16	ER5a	ExonRegion	1	83.81	38.78	32.87	35.33	91.42	10.72	40.86
17	E5a_E6a	KnownJunction	1	85.62	39.46	44.81	37.55	82.23	16.59	40.87
18	ER6a	ExonRegion	0	76.12	33.56	34.68	30.68	58.86	19.81	39.84
19	E6a_E7a	KnownJunction	0	61.49	25.43	19.26	34.95	40.41	19.75	23.47
20	ER7a	ExonRegion	0	63.06	20.21	19.20	22.63	65.44	18.04	33.36
21	E7a_E8a	KnownJunction	0	54.26	16.66	20.87	14.71	51.34	18.14	30.00
22	ER8a	ExonRegion	0	68.30	27.17	22.59	18.63	55.84	27.84	33.50
23	E8a_E9a	KnownJunction	0	71.27	25.75	19.44	19.53	44.93	19.89	26.89
24	ER9a	ExonRegion	0	62.58	32.28	25.80	24.07	49.57	24.80	33.67
25	E9a_E10a	KnownJunction	0	64.59	21.94	30.70	27.52	68.47	19.32	34.55
26	E10_Aa	NovelBoundary	1	22.36	0.00	14.46	0.00	0.00	0.00	0.00
27	ER10a	ExonRegion	0	41.80	14.43	20.43	22.60	43.53	15.54	31.08
28	E10a_E11a	KnownJunction	0	27.24	17.60	15.42	34.54	44.93	16.00	29.54
29	ER11a	ExonRegion	0	36.87	13.66	15.63	27.29	40.77	16.14	29.69
30	E11a_E12a	KnownJunction	0	32.91	12.48	19.23	23.62	33.56	7.53	22.67
31	ER12a	ExonRegion	0	51.70	14.28	24.38	16.43	45.50	15.85	31.49
32	E12a_E13a	KnownJunction	0	64.36	16.50	35.75	22.03	54.50	16.78	31.51
33	ER13a	ExonRegion	0	54.92	24.10	32.28	25.72	56.84	17.77	35.03
34	E13a_E14a	KnownJunction	0	62.10	19.91	34.36	22.24	63.65	14.69	28.22
35	ER14a	ExonRegion	0	61.32	24.73	34.27	25.50	57.75	17.87	31.80
36	E14a_E15a	KnownJunction	0	66.46	20.68	27.35	27.01	56.09	17.07	35.07
37	ER15a	ExonRegion	1	67.09	19.22	33.07	36.27	69.04	14.68	39.46
38	E15a_E16a	KnownJunction	1	74.04	21.60	36.56	43.02	58.92	11.34	40.90
39	ER16a	ExonRegion	0	71.08	21.36	33.66	39.86	69.68	20.52	46.07
40	E16a_E17a	KnownJunction	0	41.77	11.61	20.91	22.81	45.34	11.98	21.38
41	ER17a	ExonRegion	0	40.05	16.84	25.77	20.77	50.01	19.57	36.76
42	E17a_E18a	KnownJunction	0	30.73	15.74	19.03	16.53	24.74	22.16	21.83
43	ER18a	ExonRegion	0	34.84	14.06	21.37	15.15	23.32	13.44	29.07
44	E18a_E19a	KnownJunction	0	31.18	17.60	23.42	15.01	27.99	16.48	31.64
45	ER19a	ExonRegion	0	46.66	14.15	28.37	13.93	36.66	12.46	27.79
46	E19a_E20a	KnownJunction	1	60.53	18.99	28.76	7.10	41.86	14.36	28.69
47	ER20a	ExonRegion	0	75.20	12.08	32.73	23.05	48.20	10.72	27.32
48	E20a_E21a	KnownJunction	1	60.83	4.44	21.61	17.20	69.50	2.81	24.87
49	ER21a	ExonRegion	0	49.11	6.99	18.49	12.23	37.21	7.57	24.01
50	E21a_E22a	KnownJunction	0	27.37	13.69	16.83	13.57	32.97	16.83	22.14
51	ER22a	ExonRegion	0	44.00	10.93	20.59	14.63	29.95	13.12	22.79
52	E22a_E23a	KnownJunction	1	32.60	4.65	17.16	13.52	18.42	17.69	23.95
53	ER23a	ExonRegion	0	48.49	9.82	24.69	19.25	34.64	12.10	33.70
54	E23a_E24a	KnownJunction	0	50.64	17.42	25.23	17.26	42.62	12.25	39.21
55	ER24a	ExonRegion	0	50.10	14.02	21.37	23.91	49.40	9.29	33.54
56	E24a_E25a	KnownJunction	0	52.59	9.46	23.70	22.59	62.38	10.29	31.69
57	ER25a	ExonRegion	0	50.91	18.27	21.61	24.76	53.35	15.10	33.38
58	E25a_E26a	KnownJunction	0	29.44	9.54	14.89	25.60	42.26	15.87	22.82
59	ER26a	ExonRegion	0	35.95	13.62	15.29	21.33	56.26	17.47	27.27
60	ER26b	ExonRegion	0	53.22	11.03	14.34	17.50	63.07	17.94	31.39
61	E26b_E27a	KnownJunction	0	40.59	8.93	15.51	18.23	59.38	12.01	33.01
62	ER27a	ExonRegion	0	65.83	13.34	18.90	28.04	69.54	12.55	37.44
63	E27a_E28a	KnownJunction	0	64.92	19.49	24.95	33.11	65.22	23.74	44.99
64	ER28a	ExonRegion	0	54.47	21.74	20.87	32.36	62.57	16.37	34.14
65	E28a_E29a	KnownJunction	0	54.48	18.50	19.23	39.72	62.63	18.33	33.51
66	ER29a	ExonRegion	0	29.56	13.64	11.15	21.57	37.51	15.37	24.09
67	E29a_E30a	KnownJunction	1	43.86	7.28	13.01	22.57	40.43	18.87	28.82
68	ER30a	ExonRegion	0	41.21	13.24	18.87	20.25	41.97	14.34	26.17
69	E30a_E31a	KnownJunction	0	45.00	13.66	20.41	14.28	41.45	24.20	28.02
70	ER31a	ExonRegion	0	44.90	10.92	22.58	15.72	63.26	16.02	34.50
71	E31a_E32a	KnownJunction	0	33.58	10.30	14.74	13.79	85.20	16.78	32.37
72	ER32a	ExonRegion	0	77.60	14.75	22.54	28.81	94.19	18.65	38.94
73	E32a_E33a	KnownJunction	0	90.96	11.27	24.46	31.02	78.93	15.54	44.38
74	ER33a	ExonRegion	0	115.76	21.75	28.31	38.26	97.69	20.16	39.39
75	E33a_E34a	KnownJunction	1	76.16	7.20	19.43	24.60	60.63	17.58	37.73
76	ER34a	ExonRegion	0	72.97	10.59	21.23	16.86	67.19	15.01	28.16
77	E34a_E35a	KnownJunction	0	59.13	11.40	15.62	16.50	55.42	16.54	24.54
78	ER35a	ExonRegion	0	61.27	13.06	19.53	18.94	65.38	14.82	28.61
79	E35a_E36a	KnownJunction	0	78.71	8.98	23.04	19.37	61.32	17.13	26.63
80	ER36a	ExonRegion	0	65.09	20.81	25.39	27.59	59.87	15.15	34.65
81	E36a_E37a	KnownJunction	0	65.16	17.44	30.25	22.43	75.29	15.14	42.49
82	ER37a	ExonRegion	0	74.63	15.32	26.14	23.97	72.71	15.24	25.26
83	E37a_E38a	KnownJunction	1	67.66	7.86	22.26	14.52	80.22	8.92	13.40
84	ER38a	ExonRegion	1	114.22	7.79	21.91	22.91	110.80	14.49	20.58
85	E38a_E39a	KnownJunction	1	131.83	14.50	22.86	25.36	115.56	24.95	19.53
86	ER39a	ExonRegion	0	88.40	12.39	22.21	18.81	104.88	16.41	28.66
87	E39a_E40a	KnownJunction	0	71.43	11.74	33.99	16.93	87.16	12.19	33.35
88	ER40a	ExonRegion	0	66.11	11.95	26.69	16.44	86.43	10.52	39.11
89	E40a_E41a	KnownJunction	0	38.62	7.70	23.08	12.25	86.82	7.08	27.75
90	ER41a	ExonRegion	0	56.91	14.37	21.71	21.28	88.79	19.26	42.13
91	E41a_E42a	KnownJunction	0	73.94	14.55	18.85	29.58	78.36	22.97	49.34
92	ER42a	ExonRegion	0	57.81	15.12	19.15	22.02	77.26	18.69	47.84
93	E42a_E43a	KnownJunction	0	62.35	11.56	17.22	17.15	88.80	7.32	39.31
94	ER43a	ExonRegion	1	55.91	7.34	19.83	23.98	79.03	16.15	33.66
95	E43a_E44a	KnownJunction	0	73.15	7.88	22.73	23.14	78.89	19.91	24.56
96	ER44a	ExonRegion	1	92.22	9.12	33.35	33.98	103.10	17.62	32.99
97	E44a_E45a	KnownJunction	1	128.76	10.61	41.80	31.86	106.07	22.78	34.55
98	ER45a	ExonRegion	1	90.69	8.97	35.98	25.70	119.08	17.92	36.27
99	E45a_E46a	KnownJunction	0	90.94	9.30	30.97	9.86	122.62	19.86	43.80
100	ER46a	ExonRegion	0	52.51	12.28	29.56	24.25	102.14	18.08	41.74
101	E46a_E47a	KnownJunction	0	39.81	13.21	24.70	28.34	104.27	12.44	48.84
102	ER47a	ExonRegion	0	53.70	14.63	27.86	26.63	89.61	15.73	48.64
103	E47a_E48a	KnownJunction	0	70.16	14.92	29.80	31.83	88.98	12.68	47.12
104	ER48a	ExonRegion	0	56.94	13.25	32.13	27.72	90.15	20.91	39.93
105	E48a_E49a	KnownJunction	0	45.60	10.85	31.69	26.55	91.20	16.67	40.57
106	ER49a	ExonRegion	0	45.41	14.51	25.80	21.44	78.44	13.16	42.20
107	E49a_E50a	KnownJunction	1	37.24	16.45	27.09	14.20	84.83	3.94	52.47
108	ER50a	ExonRegion	0	50.79	16.48	26.20	24.09	103.71	11.30	52.33
109	E50a_E51a	KnownJunction	0	60.78	22.93	22.83	18.77	117.04	15.38	50.62
110	ER51a	ExonRegion	0	62.47	20.05	28.96	26.86	105.91	19.49	48.49
111	E51a_E54a	KnownJunction	0	84.38	22.86	31.59	28.07	139.40	13.27	45.52
112	ER52a	ExonRegion	0	0.42	0.64	0.00	0.00	29.44	0.00	0.36
113	E52a_E54a	KnownJunction	0	0.00	0.00	0.00	0.00	9.36	0.00	0.00
114	I52_AR15	ActiveIntronRegion	1	17.15	5.33	1.12	0.50	23.48	0.00	0.00
115	E53_Aa	NovelBoundary	1	39.05	5.65	0.56	0.00	47.40	0.00	0.00
116	ER53a	ExonRegion	0	6.63	1.14	0.35	0.00	18.98	0.50	0.00
117	E53a_E54a	KnownJunction	1	18.79	2.89	0.82	2.22	39.01	2.41	0.00
118	ER54a	ExonRegion	0	98.36	22.04	33.71	30.72	187.68	26.11	51.81
119	E54a_E55a	KnownJunction	0	128.20	21.73	32.86	15.77	223.36	17.93	55.45
120	ER55a	ExonRegion	0	88.77	24.95	26.68	25.28	149.80	22.29	53.94
121	E55a_E56a	KnownJunction	1	74.20	18.68	28.05	17.47	112.96	33.50	50.48
122	ER56a	ExonRegion	0	64.22	19.58	22.64	20.83	121.88	21.20	43.87
123	E56_Da	NovelBoundary	0	29.01	8.28	10.02	12.43	52.61	14.69	15.94
124	E56b_E57a	KnownJunction	0	50.37	15.13	23.04	26.90	126.77	19.43	38.11
125	ER56b	ExonRegion	0	54.61	13.14	20.79	21.59	116.47	13.49	38.07
126	E57_Aa	NovelBoundary	1	21.20	0.00	7.54	0.00	0.00	0.00	0.00
127	ER57a	ExonRegion	0	77.73	22.59	23.11	31.42	158.77	22.45	45.84
128	E57a_E58a	KnownJunction	0	139.96	30.40	36.60	35.33	228.62	39.42	47.94
129	ER58a	ExonRegion	0	110.13	24.17	36.52	29.23	227.52	27.20	68.46
130	E58a_E59a	KnownJunction	0	127.68	29.16	45.01	28.07	254.41	32.67	54.47
131	ER59a	ExonRegion	0	117.10	19.21	42.99	24.12	216.97	27.81	62.53
132	E59a_E60a	KnownJunction	0	96.57	22.78	39.89	25.60	182.32	12.03	59.85
133	ER60a	ExonRegion	0	111.65	39.15	49.13	39.00	235.11	24.48	76.48
134	E60a_E61a	KnownJunction	0	103.04	40.75	46.49	39.44	294.06	33.20	82.02
135	ER61a	ExonRegion	0	121.60	35.07	43.47	37.77	266.11	30.63	86.17
136	E61a_E62a	KnownJunction	0	126.28	26.11	34.75	47.03	259.55	34.97	73.53
137	ER62a	ExonRegion	0	109.84	26.50	40.02	39.34	251.55	33.18	58.54
138	E62a_E63a	KnownJunction	0	98.14	26.25	43.05	25.28	266.72	28.51	52.94
139	ER63a	ExonRegion	0	119.01	31.37	45.44	32.50	285.60	32.21	76.40
140	E63a_E64a	KnownJunction	0	175.53	42.09	61.66	34.89	202.57	29.85	83.82
141	ER64a	ExonRegion	0	160.88	39.79	55.04	34.43	242.98	32.05	81.98
142	E64_Ab	KnownBoundary	0	142.35	36.75	46.00	30.94	261.72	38.75	72.19
143	ER64b	ExonRegion	0	121.20	35.72	40.58	31.12	223.20	35.77	73.03
144	E64a_E65a	KnownJunction	0	95.68	30.24	35.75	32.78	214.07	29.77	69.82
145	ER65a	ExonRegion	0	139.08	29.32	46.52	30.24	300.90	28.43	69.12
146	E65a_E66a	KnownJunction	0	128.76	29.48	38.11	34.43	257.98	25.92	66.41
147	ER66a	ExonRegion	0	145.25	44.85	43.93	44.60	260.59	31.24	69.33
148	E66a_E68a	KnownJunction	0	172.36	48.21	43.66	41.61	318.89	43.71	76.76
149	ER67a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
150	ER68a	ExonRegion	0	172.90	37.34	53.08	41.94	392.45	40.70	95.74
151	E68a_E69a	KnownJunction	0	138.39	34.57	54.85	54.32	271.70	48.40	98.50
152	ER69a	ExonRegion	0	133.69	42.82	44.55	48.12	300.31	39.70	89.18
153	E69a_E70a	KnownJunction	0	90.46	25.30	35.54	31.24	314.88	37.41	100.58
154	E69a_E71a	KnownJunction	0	17.29	6.04	3.22	8.53	2.05	1.66	6.84
155	ER70a	ExonRegion	0	118.00	37.82	46.18	41.53	377.58	47.78	107.59
156	E70a_E71a	KnownJunction	0	100.41	36.07	30.42	39.63	404.51	35.97	72.20
157	ER71a	ExonRegion	0	107.06	45.59	35.29	50.12	278.77	41.68	72.77
158	E71a_E72a	KnownJunction	0	83.47	46.19	28.74	39.26	179.24	41.89	52.52
159	ER72a	ExonRegion	0	85.27	51.79	27.69	46.60	264.89	42.36	72.75
160	E72_Da	NovelBoundary	1	34.20	0.00	12.59	1.03	0.00	0.00	0.00
161	E72b_E73a	KnownJunction	0	77.16	38.38	25.52	44.48	311.93	48.35	83.85
162	ER72b	ExonRegion	1	77.61	42.22	24.56	43.33	276.56	47.20	81.46
163	ER73a	ExonRegion	0	62.15	34.82	20.75	34.75	164.02	40.12	56.37
164	E73a_E74a	KnownJunction	0	78.01	32.00	18.21	30.78	131.42	44.97	49.19
165	ER74a	ExonRegion	0	62.58	34.52	21.59	32.40	140.48	43.14	50.96
166	E74_Da	KnownBoundary	0	60.35	31.97	25.28	23.38	124.67	43.39	52.40
167	ER74b	ExonRegion	0	50.07	25.98	15.22	30.81	117.02	49.67	50.10
168	E74b_E75a	KnownJunction	0	45.91	21.70	17.76	32.21	123.54	21.71	41.82
169	ER75a	ExonRegion	1	53.61	21.01	15.56	26.31	163.43	35.31	62.47
170	E75a_E76a	KnownJunction	1	50.54	11.93	14.63	28.28	181.63	36.23	57.35
171	ER76a	ExonRegion	0	76.36	25.43	22.22	31.29	232.90	30.99	69.48
172	E76a_E77a	KnownJunction	0	90.71	37.12	31.69	48.33	251.35	44.97	95.45
173	ER77a	ExonRegion	0	97.52	41.89	31.42	44.84	289.22	43.50	93.74
174	ER78a	ExonRegion	0	112.01	16.54	33.25	25.06	201.65	34.86	51.61