Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AIG1	Gene	0	39.39	29.55	75.50	70.70	101.95	25.17	229.57
2	357847	Transcript	0	1.56	2.13	3.27	8.77	5.15	1.71	8.65
3	367601	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	367598	Transcript	0	0.60	0.34	1.69	0.55	1.17	0.00	4.12
5	344492	Transcript	0	3.15	0.00	1.34	0.00	1.18	1.47	10.68
6	367596	Transcript	1	4.11	24.54	23.23	95.50	16.53	30.19	14.19
7	275235	Transcript	0	8.91	3.05	10.98	6.81	27.13	3.69	35.34
8	IG46_SR1	SilentIntergenicRegion	0	20.92	36.76	27.45	34.83	0.48	46.69	0.93
9	IG46_AR1	ActiveIntergenicRegion	0	15.63	48.45	21.98	59.17	0.21	108.24	1.54
10	IG46_SR2	SilentIntergenicRegion	0	15.58	19.19	18.97	14.80	0.58	28.65	0.87
11	IG46_AR2	ActiveIntergenicRegion	0	27.05	19.63	26.01	19.60	1.32	38.60	1.87
12	IG46_SR3	SilentIntergenicRegion	0	40.38	12.52	36.70	16.84	1.56	28.74	0.52
13	IG46_AR3	ActiveIntergenicRegion	0	10.33	5.71	10.85	5.54	0.68	15.62	1.22
14	IG46_SR4	SilentIntergenicRegion	0	12.82	9.07	12.35	6.73	0.55	8.53	0.42
15	IG46_SR6	SilentIntergenicRegion	0	8.32	3.37	9.82	2.57	0.35	5.83	0.50
16	IG46_AR8	ActiveIntergenicRegion	0	20.96	10.51	15.91	20.55	4.53	45.10	1.77
17	IG46_AR9	ActiveIntergenicRegion	0	16.06	8.71	9.33	15.47	3.78	24.17	1.62
18	IG46_SR7	SilentIntergenicRegion	0	19.60	5.77	12.47	7.90	0.64	20.26	0.56
19	IG46_AR10	ActiveIntergenicRegion	0	18.02	10.65	9.40	6.35	0.54	13.85	0.54
20	IG46_AR11	ActiveIntergenicRegion	0	14.55	7.39	9.96	8.17	0.66	14.92	0.82
21	IG46_SR9	SilentIntergenicRegion	0	36.11	10.69	24.32	15.54	1.20	24.90	0.99
22	IG46_AR12	ActiveIntergenicRegion	0	26.67	2.70	12.28	7.91	0.81	29.25	0.28
23	IG46_SR10	SilentIntergenicRegion	0	10.01	3.37	6.01	3.23	0.49	6.94	0.09
24	IG46_SR20	SilentIntergenicRegion	0	3.74	3.87	13.20	8.74	0.50	1.14	0.86
25	ER1a	ExonRegion	0	1.98	3.64	5.18	13.18	7.06	2.19	8.53
26	ER1b	ExonRegion	0	4.61	7.29	9.14	28.06	16.60	9.81	23.61
27	ER1c	ExonRegion	0	24.38	52.10	78.76	149.61	139.83	44.01	257.44
28	E1a_E2a	KnownJunction	1	3.30	24.09	18.90	120.39	11.57	39.23	12.75
29	E1a_E3a	KnownJunction	1	11.67	37.31	65.49	120.91	32.90	31.22	210.46
30	E1a_E4a	KnownJunction	0	3.15	0.00	1.34	0.00	1.18	1.47	10.68
31	ER2a	ExonRegion	1	4.92	24.99	27.57	70.61	21.48	21.15	15.62
32	E2_Da	NovelBoundary	1	6.06	4.89	30.87	11.95	4.56	4.40	0.00
33	ER3a	ExonRegion	0	44.25	51.96	118.17	131.66	176.69	39.10	421.15
34	E3a_E4a	KnownJunction	0	59.62	55.28	147.44	133.32	169.72	41.83	394.82
35	ER4a	ExonRegion	0	62.33	53.04	150.15	138.56	155.79	39.86	403.89
36	E4a_E6a	KnownJunction	0	65.14	42.30	148.10	130.23	142.31	37.14	454.88
37	E4a_E7a	NovelJunction	0	3.25	5.67	8.52	9.51	11.85	1.50	30.90
38	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	I5_AR5	ActiveIntronRegion	0	9.52	10.58	15.06	25.08	29.55	7.92	52.20
40	ER6a	ExonRegion	0	70.11	54.98	151.50	132.79	167.00	44.03	483.59
41	E6a_E7a	KnownJunction	0	72.48	54.99	155.00	126.05	155.51	41.43	427.02
42	ER7a	ExonRegion	0	88.05	59.85	182.79	131.78	232.00	41.38	600.01
43	E7a_E8a	KnownJunction	1	4.36	0.00	11.68	11.95	15.65	1.15	45.44
44	E7a_E9a	NovelJunction	1	8.31	1.39	6.14	3.03	31.21	1.58	69.65
45	E7a_E10a	KnownJunction	0	101.22	45.55	152.94	112.51	142.81	41.70	503.26
46	E7b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER7b	ExonRegion	0	1.20	0.67	3.39	1.11	2.34	0.00	8.25
48	E8a_E9a	KnownJunction	1	0.00	0.00	3.32	0.00	8.00	1.47	29.65
49	ER8a	ExonRegion	1	1.54	0.00	5.23	4.16	14.22	1.23	48.35
50	ER9a	ExonRegion	0	1.41	0.00	6.28	1.40	19.61	1.23	40.20
51	E9_Da	KnownBoundary	1	6.14	0.00	15.33	10.32	31.67	3.38	98.99
52	ER9b	ExonRegion	1	29.75	12.20	23.68	11.12	70.64	10.89	17.91
53	E9_Db	NovelBoundary	0	60.10	32.31	56.50	40.18	72.99	30.36	53.74
54	I9_SR1	SilentIntronRegion	0	2.94	1.31	4.86	1.34	28.56	0.00	40.49
55	ER10a	ExonRegion	0	53.46	21.57	86.49	49.71	104.75	23.00	311.26
56	ER10b	ExonRegion	0	1.15	0.61	1.35	4.36	3.24	1.23	8.77
57	IG47_AR1	ActiveIntergenicRegion	0	5.38	1.21	5.42	0.00	8.64	2.45	3.71