Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	REV3L	Gene	0	69.05	42.81	98.09	59.49	20.77	49.22	28.39
2	368805	Transcript	0	0.00	0.00	0.30	0.04	0.09	0.00	0.15
3	368802	Transcript	0	0	0	0	0	0	0	0
4	358835	Transcript	0	0	0	0	0	0	0	0
5	229465	Transcript	0	6.55	4.38	5.72	2.01	8.84	3.82	1.63
6	IG4_AR6	ActiveIntergenicRegion	0	1.54	1.21	0.00	0.00	7.52	0.00	0.00
7	IG4_AR3	ActiveIntergenicRegion	0	10.01	2.74	15.01	4.95	14.67	2.75	2.01
8	IG4_AR2	ActiveIntergenicRegion	0	2.31	4.14	1.57	8.10	6.32	13.01	0.60
9	IG4_SR1	SilentIntergenicRegion	0	0.87	2.60	0.69	9.22	0.11	7.28	0.50
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.13	0.00	0.00	0.00
11	E1a_E1c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	0.00	0.58	0.00	3.56	0.00	0.35	0.10
13	ER1c	ExonRegion	0	1.50	10.00	0.77	6.02	0.62	3.57	0.40
14	E1_Ac	KnownBoundary	0	9.50	12.77	3.02	7.31	0.00	10.21	2.19
15	ER1d	ExonRegion	0	7.84	26.00	9.90	25.29	1.52	17.72	2.45
16	E1b_E2a	KnownJunction	0	9.31	25.54	16.50	21.43	2.07	15.49	3.80
17	I1_SR2	SilentIntronRegion	1	25.19	6.53	27.39	8.21	1.61	4.46	0.89
18	I1_AR2	ActiveIntronRegion	1	36.04	8.83	32.39	9.21	1.31	7.39	1.74
19	I1_SR3	SilentIntronRegion	0	18.02	0.83	22.49	1.12	0.36	3.60	2.75
20	I1_AR3	ActiveIntronRegion	0	22.75	1.66	16.49	2.14	0.56	3.91	1.98
21	I1_SR4	SilentIntronRegion	0	16.88	2.53	12.09	3.06	0.77	1.20	1.37
22	I1_AR7	ActiveIntronRegion	0	24.54	10.28	17.74	11.25	1.94	8.57	2.88
23	I1_SR7	SilentIntronRegion	1	19.56	1.45	11.03	3.03	0.74	1.16	0.70
24	I1_AR9	ActiveIntronRegion	0	18.53	4.83	11.53	2.19	0.10	2.15	1.16
25	ER2a	ExonRegion	0	34.72	56.54	60.34	54.89	5.85	32.12	18.11
26	E2a_E3a	KnownJunction	0	29.41	57.06	60.60	58.87	7.58	39.23	18.43
27	ER3a	ExonRegion	0	42.11	57.28	65.50	72.06	8.95	38.76	22.50
28	E3a_E4a	KnownJunction	1	51.39	60.14	83.23	71.17	6.89	23.96	25.42
29	ER4a	ExonRegion	0	45.34	47.67	86.02	61.05	8.77	30.22	22.94
30	E4_Da	NovelBoundary	1	15.77	0.00	28.68	2.93	0.00	0.00	2.22
31	E4a_E5a	KnownJunction	0	44.88	34.39	81.31	52.18	11.76	26.02	13.94
32	ER5a	ExonRegion	0	66.02	36.73	89.59	56.77	12.63	38.21	17.05
33	E5a_E6a	KnownJunction	1	59.58	24.27	82.87	68.65	18.60	29.59	20.01
34	ER6a	ExonRegion	0	48.78	33.94	70.98	61.60	8.18	34.51	14.51
35	E6a_E7a	KnownJunction	0	63.59	30.90	67.61	46.05	7.77	33.71	13.30
36	ER7a	ExonRegion	0	54.96	36.90	70.28	52.66	6.90	24.30	15.38
37	E7_Da	NovelBoundary	1	28.09	8.67	14.34	6.18	2.12	3.00	0.00
38	E7a_E8a	KnownJunction	0	34.66	24.35	52.21	37.20	13.05	19.46	17.11
39	I7_SR1	SilentIntronRegion	1	21.49	2.86	12.08	5.09	0.82	2.35	0.85
40	ER8a	ExonRegion	0	37.54	25.71	59.86	38.20	9.15	20.70	13.12
41	E8a_E9a	KnownJunction	1	37.12	28.29	54.68	49.33	9.87	15.52	14.06
42	ER9a	ExonRegion	0	39.24	33.70	54.19	46.52	6.43	32.05	17.22
43	E9a_E10a	KnownJunction	0	35.33	34.84	58.06	48.38	10.47	35.80	17.61
44	ER10a	ExonRegion	0	33.38	33.44	60.76	57.69	9.11	36.28	18.37
45	E10a_E11a	KnownJunction	0	32.11	31.79	51.17	57.14	7.56	30.42	12.24
46	ER11a	ExonRegion	0	58.87	43.24	87.82	68.14	12.71	31.70	25.92
47	E11a_E12a	KnownJunction	0	81.53	63.18	109.80	49.58	12.45	35.64	33.25
48	ER12a	ExonRegion	0	62.17	57.67	94.00	58.58	13.01	32.72	32.87
49	E12a_E13a	KnownJunction	0	80.50	53.49	115.42	74.99	16.23	33.90	36.36
50	ER13a	ExonRegion	0	83.69	41.23	115.04	51.87	16.08	44.84	27.79
51	E13a_E14a	KnownJunction	0	37.05	49.89	89.14	60.87	20.86	47.49	25.07
52	ER14a	ExonRegion	0	77.35	51.45	127.24	79.50	24.57	68.19	38.49
53	E14a_E15a	KnownJunction	0	46.98	29.42	88.74	49.87	13.83	57.54	32.59
54	E14a_E16a	NovelJunction	0	8.90	16.47	10.10	19.56	3.14	13.83	0.00
55	E15_Aa	NovelBoundary	1	26.42	0.00	45.42	3.77	1.18	3.27	0.00
56	ER15a	ExonRegion	0	80.90	38.69	129.48	61.74	24.63	67.57	39.87
57	E15a_E16a	KnownJunction	0	98.42	42.87	139.21	68.08	42.76	69.55	43.71
58	ER16a	ExonRegion	0	80.16	50.66	129.47	63.67	27.28	54.94	41.50
59	E16a_E17a	KnownJunction	0	89.42	37.07	113.88	79.59	29.32	33.18	31.82
60	I16_AR1	ActiveIntronRegion	1	16.39	7.89	5.94	2.43	0.96	10.33	0.43
61	ER17a	ExonRegion	0	89.66	42.22	122.43	61.09	25.35	44.49	37.25
62	E17a_E18a	KnownJunction	0	91.18	26.61	103.98	52.72	32.99	46.12	25.64
63	ER18a	ExonRegion	0	87.84	39.07	125.56	53.96	28.28	41.89	31.03
64	E18_Da	NovelBoundary	1	42.28	1.55	53.76	1.33	0.00	0.00	0.56
65	E18a_E19a	KnownJunction	0	86.35	24.77	112.99	54.13	26.90	46.20	28.42
66	E19_Aa	NovelBoundary	0	4.31	15.26	3.20	3.20	0.00	3.99	2.26
67	ER19a	ExonRegion	0	97.81	37.51	127.45	58.44	29.86	45.63	28.93
68	E19a_E20a	KnownJunction	0	89.06	40.83	135.99	55.67	27.82	44.86	21.55
69	ER20a	ExonRegion	0	133.32	60.12	147.36	90.26	48.90	67.97	45.51
70	E20_Da	NovelBoundary	1	84.65	2.94	77.14	1.60	0.92	1.45	0.00
71	E20a_E21a	KnownJunction	0	158.90	76.71	180.48	120.88	53.32	82.76	47.80
72	ER21a	ExonRegion	0	107.91	58.31	126.82	95.17	36.35	59.16	43.06
73	E21_Da	NovelBoundary	1	19.46	2.36	5.03	0.00	2.77	0.00	1.53
74	E21a_E22a	KnownJunction	0	82.48	45.37	96.57	79.65	44.26	42.18	46.33
75	E21a_E23a	NovelJunction	0	2.94	1.21	2.62	7.64	0.00	7.99	0.00
76	I21_SR2	SilentIntronRegion	1	16.33	2.29	4.95	2.43	0.77	3.37	0.80
77	E22_Aa	NovelBoundary	1	43.79	1.63	44.38	2.79	0.00	0.00	2.44
78	ER22a	ExonRegion	0	64.58	33.93	91.07	71.24	35.35	46.35	39.29
79	E22a_E23a	KnownJunction	0	39.27	33.18	85.29	64.56	16.90	41.27	38.21
80	ER23a	ExonRegion	0	57.49	44.16	99.71	66.89	27.59	49.79	42.21
81	E23_Da	NovelBoundary	0	15.96	12.93	7.63	4.77	2.88	5.95	0.87
82	E23a_E24a	KnownJunction	1	29.62	40.69	92.90	63.58	12.13	31.86	31.17
83	ER24a	ExonRegion	0	56.91	46.00	106.63	64.43	28.14	49.32	38.34
84	E24a_E25a	KnownJunction	0	48.55	45.66	97.68	57.08	27.20	43.25	25.35
85	ER25a	ExonRegion	0	97.32	66.12	128.28	79.56	31.59	61.17	41.72
86	E25a_E26a	KnownJunction	0	124.82	75.00	141.53	81.41	50.85	74.85	41.06
87	ER26a	ExonRegion	0	117.03	76.25	133.34	84.24	39.56	86.53	44.17
88	E26_Da	NovelBoundary	0	12.53	11.85	13.62	12.49	5.49	9.03	6.85
89	E26a_E27b	KnownJunction	0	101.01	70.12	117.61	70.11	39.81	74.15	35.89
90	I26_AR1	ActiveIntronRegion	0	27.25	8.17	15.68	6.95	4.82	8.03	4.42
91	ER27a	ExonRegion	0	10.49	13.19	9.29	6.01	3.82	8.04	3.01
92	E27_Ab	KnownBoundary	0	16.52	8.56	12.69	12.71	5.23	7.91	2.28
93	ER27b	ExonRegion	0	121.20	87.51	146.84	94.07	49.46	73.83	35.06
94	E27a_E28a	KnownJunction	0	114.58	73.06	142.70	105.33	45.94	47.25	30.04
95	ER28a	ExonRegion	0	96.50	68.63	142.22	111.48	41.45	69.70	33.58
96	E28a_E29a	KnownJunction	0	51.44	43.56	93.62	74.01	33.36	63.09	21.84
97	E28a_E30a	NovelJunction	0	8.23	0.97	8.69	11.22	3.30	6.16	0.67
98	I28_AR1	ActiveIntronRegion	0	14.02	2.03	10.23	3.75	7.82	1.75	3.50
99	E29_Aa	NovelBoundary	0	24.53	4.05	34.29	2.44	5.44	2.89	6.71
100	ER29a	ExonRegion	0	58.46	47.14	95.33	81.07	34.65	74.16	26.76
101	E29_Da	NovelBoundary	0	1.35	5.54	3.68	3.87	7.72	3.08	4.76
102	E29a_E30a	KnownJunction	0	49.29	56.14	66.98	67.32	24.90	63.33	17.03
103	I29	Intron	0	7.37	2.62	7.93	2.28	9.06	2.11	3.99
104	I29_AR1	ActiveIntronRegion	0	4.97	3.78	5.31	3.58	11.83	2.78	1.86
105	I29_SR1	SilentIntronRegion	0	8.00	2.43	8.60	2.05	8.67	2.02	4.53
106	E30_Aa	NovelBoundary	0	6.41	2.36	6.06	8.02	11.39	1.98	6.98
107	ER30a	ExonRegion	0	67.45	59.12	96.55	91.94	33.04	72.26	33.92
108	E30_Da	NovelBoundary	0	10.06	3.65	10.98	3.17	18.44	1.23	5.29
109	E30a_E31a	KnownJunction	0	2.49	1.47	7.11	0.00	0.00	2.52	0.00
110	E30a_E33a	KnownJunction	0	43.98	79.42	70.56	110.64	40.18	101.04	37.75
111	I30	Intron	0	9.79	3.92	9.42	4.50	9.45	3.64	4.62
112	I30_SR1	SilentIntronRegion	0	9.82	3.93	9.46	4.51	9.48	3.65	4.63
113	E31_Aa	NovelBoundary	0	14.30	1.18	17.68	2.44	15.61	4.72	6.51
114	ER31a	ExonRegion	0	13.21	2.87	6.48	2.04	31.54	4.73	3.50
115	E31_Da	NovelBoundary	0	250.85	81.23	155.21	111.99	75.71	95.25	94.07
116	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
117	E33_Aa	NovelBoundary	1	29.71	8.07	10.89	13.19	21.62	3.51	11.62
118	ER33a	ExonRegion	0	96.67	75.68	116.18	133.35	57.34	124.34	45.23
119	E33_Da	NovelBoundary	0	30.03	8.85	22.58	6.34	8.60	3.22	11.71
120	E33a_E34a	KnownJunction	0	77.29	49.84	93.44	91.70	35.69	80.08	30.81
121	I33_AR1	ActiveIntronRegion	0	8.81	5.59	8.25	2.70	8.64	2.67	2.40
122	I33_AR3	ActiveIntronRegion	0	17.72	5.73	17.76	3.44	11.23	1.95	5.48
123	ER34a	ExonRegion	0	50.16	39.84	76.77	66.56	26.78	71.72	32.86
124	ER34b	ExonRegion	0	0.00	0.00	0.90	0.00	0.27	0.00	0.45
125	IG3	Intergenic	0	5.61	1.52	7.87	2.76	22.81	1.32	6.73
126	IG3_AR9	ActiveIntergenicRegion	0	4.63	1.60	6.15	0.32	14.35	0.47	3.87
127	IG3_SR6	SilentIntergenicRegion	0	4.12	0.94	3.52	1.43	8.53	0.36	4.21
128	IG3_AR8	ActiveIntergenicRegion	0	3.45	0.00	4.49	3.04	7.76	0.84	4.85
129	IG3_AR7	ActiveIntergenicRegion	0	3.92	1.28	2.24	2.64	7.73	0.68	4.49
130	IG3_SR5	SilentIntergenicRegion	0	2.67	0.28	1.86	0.86	10.19	0.61	4.70
131	IG3_AR6	ActiveIntergenicRegion	0	5.21	2.34	7.50	0.98	14.86	1.92	8.10
132	IG3_SR4	SilentIntergenicRegion	0	2.10	0.98	4.57	2.09	13.40	1.36	5.05
133	IG3_AR5	ActiveIntergenicRegion	0	1.86	0.58	3.83	1.15	11.90	0.00	4.08
134	IG3_SR3	SilentIntergenicRegion	0	3.86	1.34	5.06	1.72	17.58	0.66	6.66
135	IG3_AR4	ActiveIntergenicRegion	0	11.39	2.13	16.02	5.01	48.23	2.29	11.73
136	IG3_SR2	SilentIntergenicRegion	0	5.43	1.41	6.57	1.83	17.99	1.13	3.43
137	IG3_AR1	ActiveIntergenicRegion	0	16.44	5.76	19.73	12.51	64.27	2.69	19.53
138	IG3_SR1	SilentIntergenicRegion	0	3.80	1.28	6.53	1.30	27.96	0.00	2.56