Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KHDC1	Gene	0	0.88	0.38	1.89	1.34	13.01	2.56	5.51
2	370380	Transcript	0	0.19	0.00	0.17	0.00	0.90	0.00	0.00
3	370384	Transcript	0	0.52	0.00	0.29	0.00	5.66	2.29	3.38
4	398508	Transcript	0	4.16	1.02	5.06	2.72	42.09	2.62	6.40
5	370385	Transcript	0	0.07	0.00	0.00	0.03	0.35	0.00	0.10
6	257765	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	370388	Transcript	0	0.00	0.00	0.23	0.19	0.00	0.83	1.26
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.58	0.00	0.00
9	E1a_E2c	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	0.00	0.00
10	ER2a	ExonRegion	0	0.00	0.00	0.58	0.00	3.99	0.17	0.88
11	E2_Ab	KnownBoundary	0	0.00	0.00	0.66	0.00	3.00	0.00	4.11
12	ER2b	ExonRegion	0	0.14	0.44	1.31	1.84	13.56	6.40	13.25
13	E2_Ac	KnownBoundary	0	0.00	0.00	1.62	2.76	11.66	7.13	21.41
14	ER2c	ExonRegion	0	0.55	0.00	3.05	2.64	19.52	9.94	19.16
15	E2_Da	NovelBoundary	0	0.00	0.00	1.22	1.08	13.02	1.18	2.94
16	E2a_E3a	KnownJunction	0	0.00	0.00	2.36	0.00	24.64	2.60	9.26
17	E3_Aa	NovelBoundary	0	240.72	317.20	237.02	316.80	470.44	312.89	146.47
18	ER3a	ExonRegion	0	0.55	0.00	2.08	0.00	24.33	5.30	12.38
19	E3_Da	NovelBoundary	0	3507.66	2497.89	2343.31	2133.48	4771.06	1703.58	2257.23
20	E3a_E4a	KnownJunction	0	0.00	0.00	0.83	0.00	12.33	3.30	6.69
21	E3a_E6a	KnownJunction	0	1.03	0.00	0.00	0.00	7.33	4.42	5.88
22	I3	Intron	0	0.58	0.23	8.02	3.04	8.80	0.23	4.42
23	I3_SR1	SilentIntronRegion	0	0.67	0.32	9.74	2.48	10.06	0.22	5.07
24	I3_AR2	ActiveIntronRegion	0	0.59	0.00	6.43	7.19	9.52	0.40	4.71
25	I3_AR3	ActiveIntronRegion	0	0.51	0.00	1.55	0.77	7.80	0.44	4.17
26	I3_AR4	ActiveIntronRegion	0	0.00	0.00	0.49	2.16	8.11	0.00	3.42
27	ER4a	ExonRegion	0	0.41	0.00	1.89	1.64	15.10	0.62	5.08
28	E4_Da	KnownBoundary	0	0.00	0.00	1.74	1.68	12.96	0.00	2.26
29	E4a_E4b	KnownJunction	0	0.58	0.00	0.52	0.00	0.00	0.00	0.00
30	ER4b	ExonRegion	0	7.27	1.53	6.88	3.45	61.99	4.38	6.08
31	E4_Ab	KnownBoundary	0	1564.11	994.61	1259.32	1067.44	918.84	926.60	844.22
32	ER4c	ExonRegion	0	7.49	3.67	7.28	5.85	41.85	14.05	6.46
33	E4_Db	KnownBoundary	0	0.00	0.00	2.24	0.00	10.67	1.50	5.07
34	ER4d	ExonRegion	0	1.06	0.51	3.23	1.99	22.18	0.85	6.73
35	E4_Dc	NovelBoundary	0	0.00	0.00	2.97	1.57	7.84	1.10	1.56
36	I4	Intron	0	0.12	0.06	2.59	1.92	10.57	0.99	4.00
37	I4_SR2	SilentIntronRegion	0	0.15	0.28	3.44	2.43	14.70	1.69	5.18
38	I4_AR2	ActiveIntronRegion	0	0.37	0.00	5.36	1.88	16.72	1.62	6.14
39	I4_SR3	SilentIntronRegion	0	0.12	0.00	4.76	3.09	21.26	1.75	6.37
40	I4_AR3	ActiveIntronRegion	0	0.00	0.00	3.43	2.49	18.63	1.23	6.47
41	I4_AR4	ActiveIntronRegion	0	0.10	0.00	2.01	2.24	7.68	0.72	3.91
42	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER5b	ExonRegion	0	0.28	0.00	0.36	0.23	1.49	0.23	0.88
44	E5a_E6a	KnownJunction	0	0.00	0.00	1.21	0.00	3.99	0.00	1.56
45	ER6a	ExonRegion	0	0.74	0.00	2.70	1.52	12.97	4.50	12.27
46	E6a_E7a	KnownJunction	0	0.00	0.00	3.79	0.00	11.96	8.84	18.11
47	ER7a	ExonRegion	0	0.32	0.98	2.27	2.00	14.84	6.87	12.66
48	E7a_E8a	KnownJunction	0	0.00	0.00	3.92	1.14	19.50	4.69	13.50
49	E7a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
50	ER8a	ExonRegion	0	0.00	0.46	1.85	1.18	8.88	1.91	7.34
51	ER8b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER9a	ExonRegion	0	0.00	0.00	0.02	0.00	0.00	0.69	0.84
53	ER9b	ExonRegion	0	0.00	0.00	0.73	0.76	0.61	4.49	0.98
54	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER10a	ExonRegion	0	0.00	0.00	0.71	0.00	0.12	1.23	2.12
56	E10_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	3.41	0.00	0.66
57	E10a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E10_Ab	KnownBoundary	0	0.00	0.00	0.89	0.00	1.08	3.06	4.89
59	ER10b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	2.02
60	ER10c	ExonRegion	0	0.00	0.00	0.21	0.81	0.00	2.39	1.03
61	E10b_E11a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.86
62	ER11a	ExonRegion	0	0.00	0.00	1.29	0.71	0.59	1.32	0.63
63	E11_Da	KnownBoundary	0	0.00	1.47	1.47	0.00	3.11	1.50	2.25
64	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER11b	ExonRegion	0	0.00	0.00	0.66	0.58	0.00	1.80	0.91
66	E12_Aa	NovelBoundary	0	266.29	201.21	272.79	224.21	188.99	332.37	189.32
67	ER12a	ExonRegion	0	0.60	0.00	0.00	0.00	3.19	0.00	0.00
68	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER13a	ExonRegion	0	0.00	0.00	0.00	0.28	0.00	0.00	0.00
70	E13_Da	NovelBoundary	0	0.00	1.60	1.60	0.00	10.93	7.69	11.28
71	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00