Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COL12A1	Gene	0	42.29	16.83	274.42	125.12	7.58	137.96	578.85
2	370134	Transcript	1	10.28	11.40	96.42	64.74	0.40	41.18	221.18
3	345356	Transcript	1	0.00	0.00	4.50	0.00	0.00	19.97	10.71
4	322507	Transcript	0	3.93	3.64	34.34	19.67	0.59	8.72	65.04
5	265379	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG37_AR1	ActiveIntergenicRegion	0	2.31	2.71	7.48	21.49	0.29	24.50	26.59
7	ER1a	ExonRegion	0	0.18	1.73	10.65	23.07	0.00	25.25	20.28
8	E1_Ab	KnownBoundary	0	0.67	4.39	27.40	58.60	0.00	65.69	51.65
9	ER1b	ExonRegion	0	5.30	4.05	29.15	42.20	0.00	52.48	47.57
10	E1a_E2a	KnownJunction	0	4.84	5.73	28.48	30.02	0.00	47.25	81.35
11	ER2a	ExonRegion	0	9.96	9.73	53.39	46.50	0.38	60.51	111.69
12	E2a_E3a	KnownJunction	1	19.09	13.92	73.52	52.29	0.00	39.15	152.86
13	E2a_E18a	KnownJunction	1	0.00	0.00	4.50	0.00	0.00	19.97	10.71
14	ER3a	ExonRegion	1	23.05	21.86	165.23	79.85	2.73	61.75	254.74
15	E3a_E4a	KnownJunction	0	24.98	18.55	212.25	90.62	1.94	78.68	302.15
16	ER4a	ExonRegion	1	36.13	23.21	241.39	119.47	2.65	79.57	384.51
17	E4a_E5a	KnownJunction	0	46.92	17.37	293.77	110.61	2.01	83.11	430.44
18	ER5a	ExonRegion	1	57.33	23.57	330.22	135.57	4.17	83.55	457.14
19	E5a_E6a	KnownJunction	1	58.43	27.61	328.39	148.11	7.35	67.13	431.40
20	ER6a	ExonRegion	1	56.84	23.52	321.38	131.21	4.43	62.81	445.13
21	E6a_E7a	KnownJunction	1	43.26	22.88	318.75	106.96	3.87	50.92	444.83
22	ER7a	ExonRegion	1	41.17	22.03	299.12	112.98	5.06	53.84	426.72
23	E7a_E8a	KnownJunction	1	33.71	33.05	289.82	128.49	4.31	64.61	446.01
24	ER8a	ExonRegion	1	41.24	24.57	296.83	141.39	6.95	68.75	516.16
25	E8a_E9a	KnownJunction	0	28.52	14.58	204.25	110.15	5.44	73.81	432.12
26	ER9a	ExonRegion	1	32.09	17.69	209.06	112.44	3.99	65.68	429.07
27	E9a_E10a	KnownJunction	1	55.96	16.31	273.60	106.14	4.54	52.34	414.72
28	ER10a	ExonRegion	1	74.85	23.91	374.07	139.22	6.25	72.15	481.49
29	E10a_E11a	KnownJunction	0	54.89	19.26	302.04	131.47	3.11	79.86	443.36
30	ER11a	ExonRegion	0	34.43	15.76	209.84	112.47	3.03	67.62	434.86
31	E11a_E12a	KnownJunction	1	21.00	20.36	148.80	126.60	4.63	74.93	405.12
32	ER12a	ExonRegion	1	30.07	21.36	218.59	125.99	2.89	69.14	456.75
33	E12a_E13a	KnownJunction	0	4.74	5.31	50.73	28.72	0.00	29.40	115.58
34	E12b_E13b	KnownJunction	0	7.86	7.28	68.68	39.34	1.18	17.45	130.07
35	E12b_E14a	NovelJunction	0	3.64	1.58	57.27	16.77	0.00	18.20	97.05
36	ER12b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER13a	ExonRegion	1	15.83	17.49	142.12	100.75	0.81	52.96	326.77
38	ER13b	ExonRegion	1	30.70	18.54	166.76	103.15	3.72	55.82	364.62
39	E13a_E14a	KnownJunction	1	52.34	9.01	226.26	123.70	5.37	48.24	416.20
40	ER14a	ExonRegion	0	49.93	12.03	265.33	123.39	6.27	68.02	564.15
41	E14a_E15a	KnownJunction	0	41.52	11.24	253.58	144.91	5.51	64.53	619.19
42	ER15a	ExonRegion	0	41.38	12.80	234.40	126.05	4.31	91.81	572.73
43	E15a_E16a	KnownJunction	0	35.02	10.11	185.08	102.51	3.97	72.47	452.54
44	E16_Aa	NovelBoundary	1	17.77	0.00	70.96	0.00	0.00	0.00	0.00
45	ER16a	ExonRegion	0	43.26	11.23	230.73	107.82	4.35	74.64	435.76
46	E16a_E17a	KnownJunction	0	55.23	10.98	325.09	138.27	5.21	84.29	479.79
47	E17_Aa	NovelBoundary	1	19.48	0.00	127.72	2.44	0.00	3.03	1.66
48	ER17a	ExonRegion	0	40.74	13.18	268.33	110.86	5.44	74.01	475.99
49	E17a_E18a	KnownJunction	0	33.10	6.36	189.77	76.37	5.16	49.12	363.93
50	ER18a	ExonRegion	0	28.14	13.03	210.35	97.13	6.20	94.53	472.71
51	E18a_E19a	KnownJunction	0	17.12	14.21	191.83	109.56	5.35	99.03	476.72
52	ER19a	ExonRegion	1	15.43	17.67	172.26	122.19	5.18	91.12	505.74
53	E19a_E20a	KnownJunction	0	27.61	15.53	193.51	113.43	6.32	112.43	522.44
54	ER20a	ExonRegion	0	31.57	15.02	233.87	116.55	8.74	91.50	571.66
55	E20a_E21a	KnownJunction	0	52.01	8.93	314.09	129.90	7.77	110.68	645.24
56	ER21a	ExonRegion	0	57.50	14.22	336.65	126.04	7.78	129.86	718.34
57	E21a_E22a	KnownJunction	0	65.54	10.11	385.04	121.50	10.49	120.20	656.45
58	ER22a	ExonRegion	0	62.56	16.01	381.70	143.12	10.67	142.83	739.01
59	E22a_E23a	KnownJunction	0	57.25	14.40	409.83	158.24	9.04	138.53	700.35
60	ER23a	ExonRegion	0	44.97	19.50	354.49	136.26	8.39	140.24	769.53
61	E23a_E24a	KnownJunction	0	45.55	9.48	270.55	95.82	6.75	109.50	670.88
62	E23a_E25a	NovelJunction	1	1.22	1.44	12.88	15.98	0.00	0.00	0.00
63	ER24a	ExonRegion	0	28.16	14.82	237.54	103.69	6.43	131.66	734.11
64	E24a_E25a	KnownJunction	1	22.50	11.19	254.17	110.56	2.28	162.67	773.14
65	ER25a	ExonRegion	1	26.81	13.12	226.63	119.69	7.43	129.66	815.29
66	E25a_E26a	KnownJunction	1	19.49	8.01	181.89	93.76	4.36	132.58	799.39
67	E26_Aa	NovelBoundary	0	2.05	1.47	20.38	33.70	0.00	24.58	0.00
68	ER26a	ExonRegion	1	28.60	15.16	284.26	140.40	4.25	177.69	888.21
69	E26_Da	NovelBoundary	1	8.63	0.00	103.06	4.36	0.00	4.50	0.00
70	E26a_E27a	KnownJunction	1	16.29	12.82	224.05	151.30	6.52	180.47	687.45
71	ER27a	ExonRegion	0	35.44	15.37	259.65	144.40	8.17	154.53	745.44
72	E27a_E28a	KnownJunction	0	50.00	12.16	336.02	113.84	3.18	145.01	764.94
73	ER28a	ExonRegion	0	42.46	23.13	318.60	123.40	6.55	142.64	762.31
74	E28a_E29a	KnownJunction	0	67.18	21.07	368.02	138.98	4.31	152.30	983.58
75	ER29a	ExonRegion	0	52.29	23.12	338.93	167.35	8.49	159.14	909.33
76	E29a_E30a	KnownJunction	0	30.94	12.87	186.28	109.48	8.76	120.06	579.79
77	E30a_E31a	KnownJunction	0	30.51	15.92	209.02	121.40	8.69	87.53	569.07
78	ER30a	ExonRegion	0	46.69	19.84	289.79	174.52	10.99	159.79	874.56
79	ER31a	ExonRegion	0	36.06	29.33	286.27	169.85	7.82	164.17	977.59
80	E31a_E32a	KnownJunction	1	29.22	22.25	243.56	139.52	9.38	178.06	911.45
81	ER32a	ExonRegion	1	34.85	30.49	296.92	176.92	12.47	191.42	998.77
82	E32a_E33a	KnownJunction	1	33.16	30.50	309.03	200.88	16.14	214.96	964.38
83	ER33a	ExonRegion	0	45.01	24.07	337.64	194.86	11.23	202.57	1005.08
84	E33a_E34a	KnownJunction	0	43.98	21.91	333.05	212.99	18.74	214.53	912.37
85	ER34a	ExonRegion	0	41.53	20.64	294.01	173.82	9.50	154.64	851.84
86	E34a_E35a	KnownJunction	0	41.51	18.76	281.36	167.61	9.15	172.03	856.68
87	ER35a	ExonRegion	0	30.51	15.27	239.11	154.61	5.77	172.63	821.02
88	E35a_E36a	KnownJunction	0	30.14	13.98	202.98	136.95	4.96	165.27	714.59
89	ER36a	ExonRegion	0	35.48	13.37	237.27	141.50	6.24	168.85	743.31
90	E36a_E37a	KnownJunction	0	50.37	28.40	262.69	135.75	4.86	177.09	765.68
91	ER37a	ExonRegion	0	42.94	26.90	291.06	148.82	8.16	170.52	737.56
92	E37a_E38a	KnownJunction	0	69.30	35.15	350.72	200.07	7.68	235.86	937.95
93	ER38a	ExonRegion	0	61.09	30.72	410.86	182.11	13.51	176.56	925.94
94	E38a_E39a	KnownJunction	0	52.72	17.52	411.28	159.57	14.13	174.17	977.73
95	ER39a	ExonRegion	0	45.21	24.13	368.19	163.81	12.32	173.49	853.10
96	E39a_E40a	KnownJunction	0	55.79	20.26	386.13	141.66	11.16	144.45	793.69
97	ER40a	ExonRegion	0	53.87	27.79	391.02	159.57	11.78	199.65	952.78
98	E40a_E41a	KnownJunction	0	43.01	19.86	323.23	141.96	14.18	181.03	770.57
99	ER41a	ExonRegion	0	65.97	32.00	403.26	164.60	12.33	190.89	974.79
100	E41a_E42a	KnownJunction	0	73.72	33.73	419.77	202.13	5.99	219.49	999.77
101	ER42a	ExonRegion	0	45.44	25.69	294.31	157.37	7.15	176.52	771.96
102	E42a_E43a	KnownJunction	0	59.93	20.65	344.80	144.37	7.61	169.80	838.70
103	ER43a	ExonRegion	0	40.95	11.48	252.73	105.59	8.06	124.94	634.58
104	E43a_E44a	KnownJunction	0	27.02	7.12	164.25	74.47	2.05	86.16	412.21
105	E43a_E45a	NovelJunction	0	0.00	3.86	0.75	5.45	0.00	9.00	0.85
106	ER44a	ExonRegion	0	30.22	15.48	244.26	98.67	8.38	92.19	556.18
107	E44a_E45a	KnownJunction	0	28.49	20.65	236.32	111.32	7.98	97.82	596.85
108	E45_Aa	NovelBoundary	1	13.19	2.44	107.65	7.99	0.00	4.93	0.62
109	ER45a	ExonRegion	0	36.38	16.56	242.28	137.98	6.57	143.21	685.96
110	E45a_E46a	KnownJunction	0	30.81	20.83	265.48	157.13	8.55	175.32	751.83
111	ER46a	ExonRegion	0	43.90	17.96	276.82	129.89	11.43	180.26	814.59
112	E46a_E47a	KnownJunction	0	46.88	25.22	263.37	116.36	8.48	160.77	753.93
113	ER47a	ExonRegion	0	44.98	12.62	318.17	139.33	12.76	167.75	851.84
114	E47a_E48a	KnownJunction	0	45.41	12.14	330.65	104.63	17.68	151.77	789.90
115	ER48a	ExonRegion	0	42.15	14.48	370.48	134.03	12.79	164.69	889.53
116	E48a_E49a	KnownJunction	0	27.56	9.62	269.20	111.83	8.64	126.49	620.12
117	ER49a	ExonRegion	0	35.69	16.61	346.75	144.84	10.80	173.09	781.27
118	E49a_E50a	KnownJunction	0	29.26	16.18	313.95	171.57	5.72	187.97	787.76
119	ER50a	ExonRegion	0	34.20	17.62	332.93	176.45	7.29	193.71	838.86
120	ER50b	ExonRegion	0	44.67	15.50	317.61	135.27	8.30	158.98	658.65
121	E50a_E51a	KnownJunction	0	52.54	10.01	319.24	130.90	9.27	125.99	580.18
122	ER51a	ExonRegion	0	75.88	10.03	359.23	138.32	12.74	160.91	601.27
123	E51a_E52a	KnownJunction	1	98.80	8.62	457.42	181.19	8.97	197.14	610.10
124	E51a_E54a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
125	ER52a	ExonRegion	1	113.33	11.64	543.94	201.63	16.39	252.11	718.36
126	E52a_E53a	KnownJunction	1	60.13	3.81	315.08	128.55	7.31	172.89	442.63
127	ER53a	ExonRegion	1	64.06	9.24	341.22	137.66	10.27	176.15	552.12
128	E53a_E54a	KnownJunction	1	70.00	11.85	355.29	135.46	10.97	221.07	657.10
129	ER54a	ExonRegion	0	55.76	16.91	301.51	125.26	8.32	195.65	585.39
130	E54a_E55a	KnownJunction	0	29.07	14.32	190.35	107.09	5.12	157.88	453.23
131	ER55a	ExonRegion	0	34.58	16.09	200.83	124.37	6.30	167.55	491.83
132	E55a_E56a	KnownJunction	0	30.99	17.05	177.26	135.29	6.75	166.00	461.62
133	ER56a	ExonRegion	0	39.89	17.36	171.08	110.02	6.50	148.12	398.90
134	E56a_E57a	KnownJunction	0	24.03	15.74	134.95	117.77	4.59	147.83	355.51
135	ER57a	ExonRegion	0	23.94	14.71	152.11	135.73	6.69	169.69	438.60
136	E57a_E58a	KnownJunction	0	19.23	15.29	125.70	116.19	6.41	151.04	394.06
137	ER58a	ExonRegion	0	23.82	16.27	140.71	126.64	3.82	148.16	408.64
138	E58a_E59a	KnownJunction	0	20.83	15.13	113.93	92.25	3.46	114.97	328.68
139	ER59a	ExonRegion	0	17.54	15.48	126.91	102.28	4.17	130.02	348.75
140	E59_Da	NovelBoundary	0	10.90	9.30	71.87	57.46	2.86	85.49	202.17
141	E59b_E60a	KnownJunction	0	15.56	17.63	117.72	108.93	2.86	127.75	329.68
142	ER59b	ExonRegion	0	14.65	17.25	118.90	107.65	3.13	137.48	347.78
143	ER60a	ExonRegion	0	17.54	17.16	146.22	135.73	2.20	169.17	447.56
144	E60a_E61a	KnownJunction	1	11.78	17.52	113.94	108.77	2.14	142.20	377.92
145	ER61a	ExonRegion	1	15.99	21.66	151.00	141.98	2.97	167.48	480.16
146	E61a_E62a	KnownJunction	0	18.61	19.94	140.40	122.91	3.53	145.58	382.13
147	ER62a	ExonRegion	0	25.00	21.31	165.07	123.17	4.77	179.65	495.81
148	E62a_E63a	KnownJunction	0	29.87	23.04	159.21	122.51	6.22	204.88	477.19
149	ER63a	ExonRegion	0	20.52	16.42	116.00	87.02	1.76	151.89	316.72
150	E63a_E64a	KnownJunction	0	28.41	15.47	155.06	87.56	1.96	147.37	347.11
151	ER64a	ExonRegion	0	20.94	13.63	141.12	84.65	4.81	159.88	358.01
152	E64_Da	NovelBoundary	0	7.39	8.01	12.04	9.10	0.00	9.73	3.30
153	E64a_E65a	KnownJunction	0	18.73	12.22	108.64	82.84	3.07	176.34	350.27
154	ER65a	ExonRegion	0	35.89	13.77	204.11	121.09	3.51	217.17	454.04
155	E65_Da	NovelBoundary	0	12.07	10.19	34.55	4.98	0.00	20.07	10.46
156	E65a_E66a	KnownJunction	1	25.65	12.87	219.98	174.85	9.52	219.84	622.07
157	I65_AR1	ActiveIntronRegion	0	14.16	5.93	24.90	13.87	0.22	21.30	9.55
158	I65_SR1	SilentIntronRegion	0	16.30	3.74	26.01	9.44	0.15	14.98	7.57
159	E66_Aa	NovelBoundary	1	7.48	7.67	10.00	17.93	0.00	21.71	9.00
160	ER66a	ExonRegion	1	42.69	10.53	295.45	105.56	11.15	198.94	493.27