Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FOXP4	Gene	0	83.21	119.22	85.85	133.20	40.21	59.02	55.12
2	373063	Transcript	1	22.80	64.55	26.82	50.52	20.49	10.16	16.68
3	373060	Transcript	0	0	0	0	0	0	0	0
4	373057	Transcript	0	8.68	18.78	7.92	12.84	10.90	10.02	6.52
5	409208	Transcript	0	0	0	0	0	0	0	0
6	307972	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.00	0.06	0.24	1.78	0.00	0.48	0.22
8	E1_Ab	KnownBoundary	0	0.00	1.31	0.76	5.09	0.00	4.02	0.85
9	ER1b	ExonRegion	0	5.75	21.55	6.97	16.76	3.78	10.12	4.31
10	E1a_E2a	KnownJunction	0	55.81	112.65	46.63	88.56	32.64	45.29	22.26
11	E2_Ab	NovelBoundary	0	29.21	54.83	26.47	39.09	8.64	19.35	11.98
12	ER2a	ExonRegion	0	53.79	109.09	59.47	96.02	32.23	38.50	28.60
13	ER2b	ExonRegion	0	74.10	209.51	99.27	180.99	45.80	82.12	56.36
14	E2a_E3a	KnownJunction	0	153.40	259.64	205.41	230.84	58.37	98.06	85.06
15	E2a_E4a	NovelJunction	0	7.64	34.42	13.34	30.59	1.75	17.82	7.37
16	E2a_E5b	NovelJunction	0	14.27	19.34	12.33	14.20	9.06	11.77	4.92
17	E2a_E14a	NovelJunction	1	0.00	0.00	0.00	4.01	0.00	20.74	0.66
18	ER3a	ExonRegion	0	136.00	271.01	174.87	219.82	76.78	93.62	102.65
19	E3a_E4a	KnownJunction	0	149.41	293.06	165.10	196.09	100.67	76.73	125.26
20	E4_Aa	NovelBoundary	1	55.81	1.63	51.47	3.93	0.00	0.00	0.00
21	ER4a	ExonRegion	0	167.29	294.71	197.61	256.67	94.27	104.08	118.71
22	E4a_E5a	KnownJunction	0	173.14	262.95	196.20	225.32	99.29	86.00	113.15
23	E4a_E5b	KnownJunction	0	8.68	18.78	7.92	12.84	10.90	10.02	6.52
24	E5_Ab	NovelBoundary	0	91.34	118.12	106.18	100.75	37.46	41.57	46.58
25	ER5a	ExonRegion	0	181.68	280.28	217.73	238.35	103.08	95.28	117.38
26	ER5b	ExonRegion	0	183.96	277.91	204.60	255.61	95.21	108.93	118.25
27	E5a_E6a	KnownJunction	0	149.27	255.10	177.56	281.72	122.04	116.04	112.27
28	ER6a	ExonRegion	0	125.81	273.06	157.83	253.19	94.97	98.49	108.16
29	E6a_E7a	KnownJunction	0	129.05	178.88	122.49	144.18	52.33	77.53	64.15
30	E6a_E7b	KnownJunction	1	22.80	64.55	26.82	50.52	20.49	10.16	16.68
31	E7_Ab	NovelBoundary	1	25.82	23.49	30.68	12.87	0.88	8.82	1.49
32	ER7a	ExonRegion	0	99.51	196.81	102.28	152.13	53.45	75.40	65.27
33	ER7b	ExonRegion	0	110.33	229.49	122.29	198.49	71.24	74.22	89.63
34	E7a_E8a	KnownJunction	0	104.81	196.38	130.18	188.99	63.76	62.34	103.76
35	E8_Aa	NovelBoundary	0	11.75	38.70	11.67	44.70	0.00	29.40	3.44
36	ER8a	ExonRegion	0	158.22	203.80	173.07	215.21	95.14	76.42	120.62
37	E8a_E9a	KnownJunction	0	197.09	222.70	244.34	258.18	96.61	92.30	164.50
38	ER9a	ExonRegion	0	151.86	242.41	190.89	261.20	60.26	93.43	130.57
39	E9a_E10a	KnownJunction	0	130.01	214.32	125.55	230.57	41.66	67.67	98.41
40	ER10a	ExonRegion	0	109.56	196.98	125.72	230.54	70.79	75.92	101.04
41	E10_Da	NovelBoundary	1	25.70	5.31	29.80	1.00	0.00	3.30	0.77
42	E10a_E11a	KnownJunction	0	46.61	68.99	45.45	68.19	27.64	30.36	37.06
43	E10a_E11b	KnownJunction	0	129.65	158.02	158.42	191.70	50.44	50.01	106.11
44	ER11a	ExonRegion	0	67.71	100.93	78.05	92.54	25.54	43.51	47.02
45	E11_Ab	KnownBoundary	0	83.57	118.67	104.69	103.98	19.62	50.71	53.61
46	ER11b	ExonRegion	0	140.68	186.14	148.94	199.72	67.65	77.98	95.13
47	E11a_E12a	KnownJunction	0	155.67	186.16	197.09	215.40	66.07	74.02	113.88
48	E12_Aa	NovelBoundary	1	68.31	5.31	81.68	1.06	16.53	0.00	0.85
49	ER12a	ExonRegion	0	168.10	188.32	191.46	219.11	85.64	59.52	112.72
50	E12a_E13a	KnownJunction	0	180.27	192.83	171.22	208.03	72.27	51.54	115.68
51	E12a_E14a	NovelJunction	0	4.56	11.85	7.01	8.86	0.00	9.30	1.22
52	ER13a	ExonRegion	0	202.78	223.47	222.95	233.22	117.83	85.19	163.47
53	E13a_E14a	KnownJunction	0	258.54	211.01	278.12	271.24	108.62	107.09	196.83
54	ER14a	ExonRegion	0	191.17	248.71	224.12	256.41	111.36	108.92	169.76
55	E14a_E15a	KnownJunction	0	178.52	222.76	216.69	204.08	94.63	102.62	164.34
56	E14a_E16a	NovelJunction	1	4.69	9.90	3.97	29.85	0.00	1.58	1.63
57	ER15a	ExonRegion	0	204.99	237.17	226.74	234.32	113.89	107.10	197.08
58	E15a_E16a	KnownJunction	0	214.77	229.85	214.99	233.61	145.28	123.23	212.65
59	ER16a	ExonRegion	0	91.45	159.96	89.90	186.19	60.49	90.18	83.85
60	E16a_E17a	KnownJunction	0	91.68	130.75	83.66	130.39	25.98	66.60	49.76
61	ER17a	ExonRegion	0	95.45	142.94	87.94	168.09	34.39	72.19	56.50
62	E17_Da	KnownBoundary	0	98.39	104.30	108.38	126.08	39.40	84.74	72.93
63	ER17b	ExonRegion	0	116.91	123.48	106.18	152.02	41.73	85.47	51.41
64	E17_Db	KnownBoundary	0	11.10	14.58	10.65	14.11	2.10	13.78	12.04
65	ER17c	ExonRegion	1	24.76	14.80	20.21	41.59	11.12	22.97	11.29