Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C2	Gene	0	9.57	4.23	2.10	4.74	1.31	26.73	1.15
2	375493	Transcript	0	4.08	0.94	0.07	0.00	0.16	3.19	0.43
3	375488	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
4	375487	Transcript	0	0	0	0	0	0	0	0
5	375485	Transcript	0	0	0	0	0	0	0	0
6	375510	Transcript	0	0	0	0	0	0	0	0
7	383359	Transcript	0	0.77	0.00	0.68	1.25	0.00	0.00	0.67
8	ER1a	ExonRegion	0	1.05	0.00	0.00	0.00	0.81	3.63	0.00
9	E1_Ab	KnownBoundary	0	1.87	0.00	0.00	0.00	0.00	12.11	0.00
10	ER1b	ExonRegion	0	2.20	0.00	0.00	0.00	0.65	7.39	0.00
11	E1a_E2a	KnownJunction	0	3.39	0.00	0.00	1.68	1.11	6.11	0.00
12	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	1.35	0.00	0.11	0.00	0.27	10.22	0.00
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	11.01	0.00
15	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
16	ER3a	ExonRegion	0	1.24	0.99	0.65	0.19	0.00	14.66	0.55
17	E3a_E4a	KnownJunction	0	0.00	0.00	0.66	1.60	0.00	11.04	0.00
18	I3_SR2	SilentIntronRegion	0	20.27	0.55	0.31	0.64	0.00	0.80	0.00
19	I3_AR2	ActiveIntronRegion	0	19.98	0.45	1.15	0.37	0.00	2.24	0.00
20	E4_Aa	NovelBoundary	0	62.05	3.78	3.13	8.07	1.15	0.00	0.85
21	ER4a	ExonRegion	0	15.05	1.52	1.00	3.97	2.50	22.98	1.04
22	E4_Da	NovelBoundary	0	23.25	1.63	1.24	4.71	0.00	5.60	0.00
23	E4a_E5a	KnownJunction	0	4.29	1.08	1.42	5.28	2.14	28.89	1.48
24	ER5a	ExonRegion	0	6.35	1.56	0.77	6.20	1.44	26.75	0.87
25	E5a_E6a	KnownJunction	0	3.07	2.47	3.16	4.23	0.00	25.16	1.45
26	E5a_E7a	KnownJunction	0	5.54	1.63	0.00	0.00	0.00	0.00	0.59
27	E5a_E8a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	4.85	0.00
28	ER6a	ExonRegion	0	6.15	3.14	1.45	2.02	0.92	34.61	1.36
29	E6a_E7a	KnownJunction	0	4.12	1.63	0.55	2.76	0.00	33.12	0.79
30	ER7a	ExonRegion	0	10.09	6.82	2.07	4.70	0.64	40.65	1.17
31	E7a_E8a	KnownJunction	0	15.77	3.47	0.85	4.39	0.00	49.58	1.49
32	ER8a	ExonRegion	0	15.09	5.12	1.44	5.47	2.57	46.02	1.99
33	E8a_E9a	KnownJunction	0	13.97	3.26	2.00	4.39	0.00	31.70	0.89
34	ER9a	ExonRegion	0	10.72	0.93	3.04	3.66	0.16	33.09	2.30
35	E9a_E10a	KnownJunction	0	10.48	0.00	1.31	2.63	1.04	20.31	1.88
36	E10_Aa	NovelBoundary	0	2.65	10.96	4.41	9.94	0.92	4.56	0.62
37	ER10a	ExonRegion	0	13.40	7.75	4.75	12.05	2.07	27.95	1.32
38	E10_Da	NovelBoundary	0	3.34	10.17	4.33	3.87	1.13	1.55	0.00
39	E10a_E11a	KnownJunction	0	8.11	3.15	1.62	2.71	1.18	15.76	2.02
40	ER11a	ExonRegion	0	10.31	2.21	2.59	8.66	1.58	23.13	2.00
41	E11a_E12a	KnownJunction	0	10.43	1.05	1.24	3.14	1.80	15.30	0.56
42	E12_Aa	NovelBoundary	0	1.84	7.80	1.49	7.37	0.00	1.58	0.80
43	ER12a	ExonRegion	0	9.02	6.29	1.11	3.21	1.67	22.14	0.49
44	E12a_E13a	KnownJunction	0	4.47	5.57	1.41	2.44	1.18	29.48	1.42
45	E13_Aa	NovelBoundary	0	0.00	5.28	2.34	10.29	0.00	5.76	0.00
46	ER13a	ExonRegion	0	12.79	9.82	3.48	8.56	1.99	29.03	1.58
47	E13a_E14a	KnownJunction	0	14.55	5.60	2.37	0.00	4.45	26.34	3.97
48	E14_Aa	NovelBoundary	0	10.31	2.57	2.85	10.86	0.00	3.54	0.87
49	ER14a	ExonRegion	0	19.97	5.08	2.75	5.81	2.92	39.33	1.31
50	E14a_E15a	KnownJunction	0	19.88	8.54	1.65	9.16	2.31	40.09	0.00
51	E15_Aa	NovelBoundary	0	5.81	2.57	6.02	10.27	0.00	4.56	0.83
52	ER15a	ExonRegion	0	25.27	8.79	4.06	6.36	1.65	46.31	0.94
53	E15_Da	NovelBoundary	0	5.54	3.57	7.04	10.02	0.00	4.58	0.00
54	E15a_E16a	KnownJunction	0	24.40	6.44	4.40	0.00	3.50	40.04	0.76
55	ER16a	ExonRegion	0	17.69	3.87	2.65	4.48	2.81	44.09	1.42
56	E16_Da	NovelBoundary	0	3.37	8.07	2.00	3.03	0.00	5.15	0.56
57	E16a_E17b	KnownJunction	0	8.01	1.21	0.82	0.00	1.18	32.62	1.62
58	ER17a	ExonRegion	0	2.61	0.24	0.14	0.00	0.32	6.38	0.27
59	E17_Da	NovelBoundary	0	9.53	4.28	0.00	0.00	1.06	21.28	0.56
60	ER17b	ExonRegion	0	10.25	0.09	0.65	0.00	1.53	29.20	1.15
61	E17b_E18a	KnownJunction	0	7.88	0.00	1.41	0.00	0.90	18.92	0.00
62	ER17c	ExonRegion	0	10.27	0.00	1.17	0.00	0.92	23.07	0.31
63	I17_SR1	SilentIntronRegion	0	1.19	3.70	2.13	2.39	0.00	8.29	0.00
64	E18_Aa	NovelBoundary	0	0.00	4.57	2.66	8.59	0.00	8.60	0.00
65	ER18a	ExonRegion	0	6.42	5.97	3.12	6.32	0.76	21.26	1.45
66	ER18b	ExonRegion	0	0.77	0.00	0.68	1.25	0.00	0.00	0.67