Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL137003.12	Gene	0	61.34	44.56	27.62	35.90	1.41	19.39	6.42
2	296858	Transcript	0	1.87	13.44	2.52	14.96	0.78	3.83	0.58
3	344707	Transcript	0	20.66	30.99	8.85	31.36	1.40	19.50	4.45
4	IG5_AR15	ActiveIntergenicRegion	0	3.13	9.62	1.99	2.84	0.23	1.04	0.00
5	IG5_AR7	ActiveIntergenicRegion	0	1.50	10.07	2.37	6.91	0.25	3.68	0.33
6	IG5_SR6	SilentIntergenicRegion	0	3.97	9.59	2.20	4.38	0.10	3.61	0.06
7	IG5_SR5	SilentIntergenicRegion	0	1.79	11.98	0.69	3.67	0.00	1.18	0.16
8	IG5_AR5	ActiveIntergenicRegion	0	15.30	29.26	16.12	13.99	2.26	6.05	2.15
9	IG5_SR4	SilentIntergenicRegion	0	25.10	40.71	22.57	23.58	2.76	7.68	1.93
10	IG5_AR4	ActiveIntergenicRegion	0	11.72	28.61	15.61	14.88	2.16	4.53	1.67
11	IG5_SR3	SilentIntergenicRegion	0	9.13	31.32	12.61	15.31	2.02	3.62	2.91
12	IG5_AR3	ActiveIntergenicRegion	0	15.91	66.29	15.98	24.81	2.18	9.86	2.46
13	IG5_AR2	ActiveIntergenicRegion	0	21.26	65.42	14.92	31.42	0.83	13.49	1.70
14	ER1a	ExonRegion	0	2.82	6.16	3.43	5.07	1.57	0.00	1.17
15	ER1b	ExonRegion	0	18.55	77.03	9.11	61.68	1.65	22.23	6.04
16	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1a_E3a	KnownJunction	0	0.92	20.73	1.61	24.84	0.00	7.66	0.00
18	Ix	Intron	1	18.74	9.14	10.97	5.90	0.69	2.76	0.82
19	Ix_AR6	ActiveIntronRegion	0	6.74	9.37	5.73	7.87	0.21	4.90	0.34
20	Ix_SR4	SilentIntronRegion	0	6.34	4.96	9.31	9.87	0.13	1.23	0.62
21	Ix_AR5	ActiveIntronRegion	0	22.47	16.22	17.37	14.52	0.53	5.41	1.35
22	Ix_SR3	SilentIntronRegion	0	14.77	8.57	10.34	8.10	0.82	5.59	0.28
23	Ix_SR2	SilentIntronRegion	0	26.48	9.10	12.97	4.58	0.78	1.44	1.05
24	Ix_AR3	ActiveIntronRegion	0	15.85	10.02	10.75	0.00	0.40	3.68	1.35
25	Ix_AR2	ActiveIntronRegion	0	21.93	11.21	14.49	1.15	0.81	4.90	0.31
26	Ix_AR1	ActiveIntronRegion	0	28.03	10.78	20.06	3.10	1.12	3.79	1.54
27	Ix_SR1	SilentIntronRegion	0	22.95	11.46	12.34	5.31	1.38	2.46	1.07
28	Ix	Intron	1	21.72	6.64	8.55	5.43	0.26	2.23	0.25
29	Ix_SR1	SilentIntronRegion	0	21.79	6.66	8.58	5.44	0.26	2.24	0.25
30	ER2a	ExonRegion	0	32.08	56.15	11.22	51.88	2.09	27.19	7.54
31	E2a_E3a	KnownJunction	0	29.89	36.83	15.33	42.21	2.10	31.33	5.82
32	Ix	Intron	1	26.40	11.16	10.53	4.99	0.44	1.69	0.70
33	Ix_AR14	ActiveIntronRegion	0	24.29	9.80	8.25	4.99	0.15	3.18	0.38
34	Ix_SR6	SilentIntronRegion	0	26.16	10.12	9.92	3.92	0.35	0.19	0.27
35	Ix_AR13	ActiveIntronRegion	0	17.34	4.33	7.61	2.74	0.58	1.80	0.37
36	Ix_SR5	SilentIntronRegion	0	27.19	8.30	8.87	4.29	0.53	1.59	0.45
37	Ix_AR12	ActiveIntronRegion	0	33.81	7.81	14.03	1.25	0.93	2.45	2.02
38	Ix_SR4	SilentIntronRegion	0	32.66	8.20	14.73	1.25	0.10	2.45	2.02
39	Ix_AR11	ActiveIntronRegion	0	21.28	11.76	8.31	3.64	0.63	0.56	1.28
40	Ix_SR3	SilentIntronRegion	0	24.67	10.99	10.36	5.12	0.33	1.55	0.72
41	Ix_AR10	ActiveIntronRegion	0	49.96	11.29	18.38	7.28	0.50	0.78	0.89
42	Ix_AR9	ActiveIntronRegion	0	27.99	12.78	13.45	4.28	0.00	1.05	0.00
43	Ix_AR8	ActiveIntronRegion	0	28.43	11.01	16.26	5.35	0.00	0.00	0.00
44	Ix_AR7	ActiveIntronRegion	0	33.73	13.30	18.44	3.33	0.00	0.00	0.00
45	Ix_AR6	ActiveIntronRegion	0	37.01	13.57	21.22	3.74	0.81	0.00	0.00
46	Ix_AR5	ActiveIntronRegion	0	38.17	13.77	21.68	3.74	0.81	0.00	0.00
47	Ix_AR4	ActiveIntronRegion	0	35.07	12.70	21.06	5.89	0.81	0.00	0.00
48	Ix_AR3	ActiveIntronRegion	0	30.35	12.63	18.09	8.11	0.81	0.00	0.67
49	Ix_SR2	SilentIntronRegion	0	15.82	10.85	9.87	3.15	0.29	1.24	0.62
50	Ix_AR2	ActiveIntronRegion	0	23.73	9.63	9.26	3.84	0.30	3.09	0.44
51	Ix_SR1	SilentIntronRegion	0	38.06	16.97	13.20	7.49	0.87	2.91	0.96
52	E3_Aa	NovelBoundary	0	19.46	14.32	9.02	7.26	0.95	3.27	0.00
53	ER3a	ExonRegion	0	65.21	42.43	29.43	33.95	1.37	19.03	6.42