Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATXN1	Gene	0	24.52	38.80	25.49	39.20	2.95	16.08	36.42
2	244769	Transcript	0	46.16	76.74	35.80	72.63	4.77	25.35	36.99
3	379065	Transcript	0	0	0	0	0	0	0	0
4	405101	Transcript	0	0.00	0.00	0.89	1.68	0.00	1.10	0.00
5	ER1a	ExonRegion	0	13.17	16.56	7.58	12.38	1.82	7.45	15.93
6	E1a_E2a	KnownJunction	0	0.80	7.36	0.00	4.69	0.00	4.66	1.46
7	E1a_E4a	NovelJunction	0	5.29	44.69	4.08	24.84	1.01	16.99	11.65
8	Ix	Intron	1	18.74	9.14	10.97	5.90	0.69	2.76	0.82
9	Ix_AR6	ActiveIntronRegion	0	6.74	9.37	5.73	7.87	0.21	4.90	0.34
10	Ix_SR4	SilentIntronRegion	0	6.34	4.96	9.31	9.87	0.13	1.23	0.62
11	Ix_AR5	ActiveIntronRegion	0	22.47	16.22	17.37	14.52	0.53	5.41	1.35
12	Ix_SR3	SilentIntronRegion	0	14.77	8.57	10.34	8.10	0.82	5.59	0.28
13	Ix_SR2	SilentIntronRegion	0	26.48	9.10	12.97	4.58	0.78	1.44	1.05
14	Ix_AR3	ActiveIntronRegion	0	15.85	10.02	10.75	0.00	0.40	3.68	1.35
15	Ix_AR2	ActiveIntronRegion	0	21.93	11.21	14.49	1.15	0.81	4.90	0.31
16	Ix_AR1	ActiveIntronRegion	0	28.03	10.78	20.06	3.10	1.12	3.79	1.54
17	Ix_SR1	SilentIntronRegion	0	22.95	11.46	12.34	5.31	1.38	2.46	1.07
18	E2_Aa	NovelBoundary	1	30.33	13.40	23.71	7.21	1.04	2.92	0.00
19	ER2a	ExonRegion	0	4.59	12.17	0.73	5.42	2.97	5.30	4.52
20	E2_Da	NovelBoundary	1	33.31	7.28	11.65	2.87	0.92	1.23	0.00
21	E2a_E3a	KnownJunction	0	7.34	11.40	0.65	4.93	3.90	5.90	7.84
22	Ix	Intron	1	21.72	6.64	8.55	5.43	0.26	2.23	0.25
23	Ix_SR1	SilentIntronRegion	0	21.79	6.66	8.58	5.44	0.26	2.24	0.25
24	ER3a	ExonRegion	0	22.25	47.55	19.12	47.34	4.18	17.82	16.72
25	E3a_E4a	KnownJunction	0	28.77	77.61	23.58	96.42	6.55	27.68	25.47
26	Ix	Intron	1	26.40	11.16	10.53	4.99	0.44	1.69	0.70
27	Ix_AR14	ActiveIntronRegion	0	24.29	9.80	8.25	4.99	0.15	3.18	0.38
28	Ix_SR6	SilentIntronRegion	0	26.16	10.12	9.92	3.92	0.35	0.19	0.27
29	Ix_AR13	ActiveIntronRegion	0	17.34	4.33	7.61	2.74	0.58	1.80	0.37
30	Ix_SR5	SilentIntronRegion	0	27.19	8.30	8.87	4.29	0.53	1.59	0.45
31	Ix_AR12	ActiveIntronRegion	0	33.81	7.81	14.03	1.25	0.93	2.45	2.02
32	Ix_SR4	SilentIntronRegion	0	32.66	8.20	14.73	1.25	0.10	2.45	2.02
33	Ix_AR11	ActiveIntronRegion	0	21.28	11.76	8.31	3.64	0.63	0.56	1.28
34	Ix_SR3	SilentIntronRegion	0	24.67	10.99	10.36	5.12	0.33	1.55	0.72
35	Ix_AR10	ActiveIntronRegion	0	49.96	11.29	18.38	7.28	0.50	0.78	0.89
36	Ix_AR9	ActiveIntronRegion	0	27.99	12.78	13.45	4.28	0.00	1.05	0.00
37	Ix_AR8	ActiveIntronRegion	0	28.43	11.01	16.26	5.35	0.00	0.00	0.00
38	Ix_AR7	ActiveIntronRegion	0	33.73	13.30	18.44	3.33	0.00	0.00	0.00
39	Ix_AR6	ActiveIntronRegion	0	37.01	13.57	21.22	3.74	0.81	0.00	0.00
40	Ix_AR5	ActiveIntronRegion	0	38.17	13.77	21.68	3.74	0.81	0.00	0.00
41	Ix_AR4	ActiveIntronRegion	0	35.07	12.70	21.06	5.89	0.81	0.00	0.00
42	Ix_AR3	ActiveIntronRegion	0	30.35	12.63	18.09	8.11	0.81	0.00	0.67
43	Ix_SR2	SilentIntronRegion	0	15.82	10.85	9.87	3.15	0.29	1.24	0.62
44	Ix_AR2	ActiveIntronRegion	0	23.73	9.63	9.26	3.84	0.30	3.09	0.44
45	Ix_SR1	SilentIntronRegion	0	38.06	16.97	13.20	7.49	0.87	2.91	0.96
46	I3	Intron	0	12.86	7.19	5.74	4.00	0.43	2.00	1.07
47	I3_AR1	ActiveIntronRegion	1	41.79	11.39	18.20	11.22	0.64	5.68	4.05
48	I3_SR1	SilentIntronRegion	1	27.07	11.04	15.92	3.59	0.99	0.64	2.18
49	I3_AR2	ActiveIntronRegion	1	25.36	9.87	14.06	5.46	1.11	0.92	2.81
50	I3_AR3	ActiveIntronRegion	1	38.69	14.14	18.59	5.04	0.72	2.38	2.63
51	I3_SR2	SilentIntronRegion	0	17.15	9.36	7.53	3.80	0.61	3.06	1.40
52	I3_AR4	ActiveIntronRegion	1	21.39	9.66	12.26	4.82	0.37	2.22	1.84
53	I3_SR3	SilentIntronRegion	1	25.13	8.47	8.46	7.30	0.75	5.32	2.32
54	I3_AR6	ActiveIntronRegion	1	18.15	6.12	7.51	11.05	1.04	4.36	1.21
55	I3_AR8	ActiveIntronRegion	1	20.23	14.82	10.41	11.28	0.84	4.81	1.12
56	I3_SR4	SilentIntronRegion	1	20.00	8.62	8.01	5.03	0.48	1.85	1.49
57	I3_AR9	ActiveIntronRegion	0	11.82	4.71	7.17	2.09	0.19	1.12	0.84
58	I3_SR5	SilentIntronRegion	0	11.88	6.33	5.44	2.77	0.39	1.33	0.96
59	I3_AR10	ActiveIntronRegion	1	13.51	11.76	4.84	6.95	0.55	4.35	1.24
60	I3_SR6	SilentIntronRegion	0	9.31	8.36	4.25	6.02	0.97	3.44	1.17
61	I3_AR11	ActiveIntronRegion	0	15.43	3.64	12.04	2.49	0.81	3.68	1.35
62	I3_AR12	ActiveIntronRegion	1	16.27	4.66	11.40	4.57	0.81	3.68	1.35
63	I3_AR13	ActiveIntronRegion	1	17.54	7.76	9.98	7.21	0.81	4.80	0.06
64	I3_AR14	ActiveIntronRegion	0	14.62	14.80	9.20	7.61	0.40	4.10	1.04
65	I3_SR7	SilentIntronRegion	0	10.62	4.65	4.50	3.51	0.15	1.18	0.64
66	I3_AR16	ActiveIntronRegion	0	7.95	8.77	4.42	4.99	0.00	4.90	2.32
67	I3_AR17	ActiveIntronRegion	0	9.82	7.18	7.22	3.31	0.00	2.61	1.03
68	I3_SR9	SilentIntronRegion	0	12.14	8.40	5.04	4.49	0.43	2.35	1.12
69	I3_AR19	ActiveIntronRegion	1	15.24	7.74	8.41	5.00	0.32	2.71	0.50
70	I3_AR20	ActiveIntronRegion	0	13.85	8.05	7.62	5.47	0.94	2.70	1.28
71	I3_SR11	SilentIntronRegion	1	24.47	14.36	6.39	10.77	1.21	3.75	1.34
72	I3_AR21	ActiveIntronRegion	0	6.17	9.72	3.59	6.12	0.33	6.40	0.95
73	I3_AR22	ActiveIntronRegion	0	14.75	9.09	6.68	4.55	0.74	3.57	1.94
74	I3_SR13	SilentIntronRegion	0	11.43	4.72	4.57	7.74	0.20	4.34	0.82
75	ER4a	ExonRegion	0	74.56	121.21	50.63	138.13	6.57	38.51	52.45
76	E4_Da	NovelBoundary	1	13.85	10.69	2.72	4.52	0.00	0.00	3.50
77	E4a_E5a	KnownJunction	0	81.35	125.81	62.71	118.71	11.85	36.34	60.49
78	I4_AR4	ActiveIntronRegion	0	9.92	4.03	3.67	4.32	1.03	1.68	1.63
79	I4_AR7	ActiveIntronRegion	1	9.99	3.64	1.35	3.74	1.86	0.00	0.00
80	I4_AR8	ActiveIntronRegion	1	16.03	6.32	4.36	3.94	1.09	0.76	2.42
81	I4_AR11	ActiveIntronRegion	1	13.12	4.38	3.24	5.32	0.37	1.61	1.86
82	ER5a	ExonRegion	1	101.16	166.05	67.04	138.82	8.02	38.89	63.01
83	E5a_E6a	KnownJunction	1	112.96	149.46	74.50	156.97	8.46	42.32	58.43
84	I5_AR16	ActiveIntronRegion	0	3.39	8.24	1.45	2.59	0.00	1.55	1.27
85	ER6a	ExonRegion	1	96.31	141.92	72.73	119.89	5.53	51.14	62.88
86	E6a_E7a	KnownJunction	0	68.83	126.13	54.32	94.25	2.05	36.61	50.92
87	I6_AR5	ActiveIntronRegion	1	2.79	11.15	3.57	4.99	0.00	1.23	1.35
88	ER7a	ExonRegion	0	54.95	86.06	46.52	96.36	4.11	38.55	44.43
89	E7a_E8a	KnownJunction	0	35.37	60.84	36.40	50.99	4.26	16.96	33.98
90	I7_AR5	ActiveIntronRegion	0	0.77	8.50	4.06	1.87	0.00	1.23	1.43
91	I7_AR10	ActiveIntronRegion	0	5.56	3.36	9.33	4.80	0.87	3.30	4.10
92	I7_SR9	SilentIntronRegion	0	11.10	5.80	7.37	10.11	0.98	2.33	4.62
93	I7_AR15	ActiveIntronRegion	1	17.59	5.47	12.10	14.45	1.42	3.04	5.99
94	I7_AR16	ActiveIntronRegion	0	6.27	7.29	6.55	9.30	0.48	4.47	5.59
95	I7_AR19	ActiveIntronRegion	0	3.03	6.27	4.35	8.60	0.00	1.74	3.51
96	I7_AR34	ActiveIntronRegion	0	2.13	7.61	4.20	8.37	0.30	5.10	4.27
97	I7_AR35	ActiveIntronRegion	0	2.52	3.73	4.16	8.59	0.45	2.50	2.17
98	ER8a	ExonRegion	0	31.22	95.06	34.18	83.58	3.73	31.63	50.28
99	E8_Ab	KnownBoundary	0	29.34	76.84	24.77	70.19	0.85	30.63	37.30
100	ER8b	ExonRegion	0	29.60	96.12	36.23	67.75	1.67	41.13	42.81
101	E8_Ac	KnownBoundary	1	15.89	75.16	35.32	41.64	2.93	33.34	32.52
102	ER8c	ExonRegion	0	11.52	52.19	12.79	48.27	1.31	17.18	28.80
103	E8a_E9a	KnownJunction	0	24.12	52.78	28.07	30.91	3.14	11.23	29.22
104	ER9a	ExonRegion	0	31.61	42.57	24.10	37.03	2.06	13.61	36.12
105	E9_Da	KnownBoundary	1	31.58	14.87	25.45	31.18	10.24	10.34	33.79
106	E9a_E9b	KnownJunction	0	0.00	0.00	0.89	1.68	0.00	1.10	0.00
107	ER9b	ExonRegion	0	48.39	27.05	30.88	36.82	8.50	11.65	52.80
108	E9_Db	KnownBoundary	1	52.09	30.08	25.55	30.02	3.32	4.88	47.92
109	ER9c	ExonRegion	0	20.51	25.87	23.13	26.70	2.21	10.31	31.85
110	E9_Ab	KnownBoundary	1	14.44	36.07	20.69	41.26	1.18	13.24	35.86
111	ER9d	ExonRegion	0	19.01	32.33	21.72	33.49	3.90	13.25	36.34
112	E9_Dc	KnownBoundary	0	26.05	35.57	18.70	38.85	2.88	15.30	35.97
113	ER9e	ExonRegion	0	30.51	33.44	34.79	39.20	4.88	20.95	48.21