Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRIM41	Gene	0	37.65	17.66	42.96	21.83	36.11	15.57	52.36
2	351937	Transcript	1	10.93	2.31	7.60	9.18	7.50	3.94	28.18
3	315073	Transcript	0	62.90	21.34	75.49	28.06	52.11	18.15	72.46
4	358801	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	8.58	6.94	9.00	6.24	9.81	4.48	12.17
6	E1_Ab	KnownBoundary	0	18.19	16.00	19.80	9.83	33.82	13.86	13.20
7	ER1b	ExonRegion	0	20.10	19.52	18.66	13.11	20.42	18.14	21.06
8	E1_Da	KnownBoundary	1	24.87	24.41	14.57	19.37	33.33	13.94	31.47
9	ER1c	ExonRegion	0	18.39	21.38	10.50	17.62	32.31	11.36	18.91
10	ER1d	ExonRegion	0	9.76	18.67	6.32	13.39	19.20	12.26	9.49
11	ER1e	ExonRegion	0	34.61	27.06	51.27	34.94	49.01	16.17	66.39
12	E1_Ad	KnownBoundary	0	49.14	21.31	64.70	42.10	70.96	16.54	90.07
13	ER1f	ExonRegion	0	50.81	23.97	51.05	31.50	49.04	21.17	72.21
14	E1_Dc	NovelBoundary	0	1.82	6.15	0.72	8.70	1.08	8.92	0.00
15	E1c_E3a	KnownJunction	0	52.62	24.12	45.53	20.29	60.31	14.58	79.97
16	I1	Intron	0	1.44	6.44	2.70	5.36	2.34	8.53	0.67
17	I1_AR1	ActiveIntronRegion	0	1.45	6.49	2.72	5.41	2.36	8.60	0.67
18	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER3a	ExonRegion	0	42.56	26.14	44.16	21.96	45.82	19.28	77.96
20	E3a_E4a	KnownJunction	0	29.72	19.23	41.93	14.44	36.52	14.10	62.54
21	E4_Aa	NovelBoundary	0	3.57	5.88	6.02	9.97	14.75	7.85	0.00
22	ER4a	ExonRegion	0	30.07	23.06	37.56	17.36	29.46	19.05	51.96
23	E4_Da	NovelBoundary	0	6.41	10.09	7.59	2.63	12.38	7.42	1.71
24	E4a_E5a	KnownJunction	1	16.34	11.40	27.32	12.33	20.77	11.28	48.88
25	I4	Intron	0	18.08	7.27	21.68	17.56	25.22	9.51	4.68
26	I4_AR1	ActiveIntronRegion	0	18.15	7.30	21.77	17.64	25.32	9.55	4.70
27	E5a_E6a	KnownJunction	1	14.75	10.72	21.08	13.95	23.10	9.27	52.24
28	ER5a	ExonRegion	1	18.34	16.37	29.78	18.32	28.10	13.70	65.52
29	I5	Intron	0	8.94	7.36	12.23	10.85	19.31	3.26	4.36
30	I5_AR1	ActiveIntronRegion	0	9.03	7.44	12.34	10.95	19.50	3.29	4.40
31	E6_Aa	NovelBoundary	0	8.19	8.83	4.45	14.33	12.73	11.15	11.97
32	ER6a	ExonRegion	0	28.95	23.72	33.46	19.53	32.22	14.21	57.98
33	E6_Da	NovelBoundary	0	6.66	4.49	8.77	15.09	8.05	5.63	3.91
34	E6a_E7a	KnownJunction	0	21.51	13.03	24.73	19.67	18.49	14.74	59.73
35	ER7a	ExonRegion	0	16.65	9.06	15.38	13.48	18.20	9.33	34.47
36	E7_Da	KnownBoundary	0	6.53	1.50	3.10	4.58	4.10	3.06	3.57
37	E7a_E7b	KnownJunction	1	9.30	4.62	4.54	2.82	5.44	1.42	17.17
38	ER7b	ExonRegion	0	35.94	13.13	46.69	24.05	30.27	12.22	38.84
39	E7_Ab	KnownBoundary	1	60.78	17.10	67.67	44.02	57.59	22.70	51.39
40	ER7c	ExonRegion	0	78.12	21.50	78.07	48.43	61.82	25.34	82.80
41	E7_Db	KnownBoundary	0	82.06	21.49	71.51	29.72	44.54	22.57	58.92
42	E7b_E7c	KnownJunction	1	12.57	0.00	10.66	15.55	9.57	6.46	39.20
43	ER7d	ExonRegion	0	89.86	29.56	104.28	32.07	73.95	24.08	106.07
44	E7_Ac	KnownBoundary	1	95.38	23.20	105.74	28.69	35.87	49.20	165.83
45	ER7e	ExonRegion	0	56.01	17.59	57.15	27.27	51.55	26.42	79.04
46	IG40_AR1	ActiveIntergenicRegion	0	3.94	3.08	8.93	5.69	5.96	2.19	5.81