Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GRM6	Gene	0	2.36	1.14	1.55	0.63	3.52	0.81	0.58
2	231188	Transcript	0	0.37	0.27	0.22	0.10	0.59	0.13	0.09
3	319065	Transcript	0	0.16	0.03	0.25	0.01	0.26	0.00	0.00
4	IG2_AR9	ActiveIntergenicRegion	0	6.50	4.77	8.79	4.05	10.38	2.19	3.56
5	IG2_AR8	ActiveIntergenicRegion	0	4.11	0.95	4.69	0.98	8.39	1.92	2.66
6	IG2_AR5	ActiveIntergenicRegion	0	3.84	1.21	8.96	1.25	7.97	0.00	1.82
7	IG2_AR4	ActiveIntergenicRegion	0	3.79	2.43	9.48	1.78	6.19	0.00	1.49
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2b	ExonRegion	0	0.00	0.00	0.00	0.00	0.19	0.00	0.00
13	E2_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2b_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER3b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4a	ExonRegion	0	0.10	0.00	0.00	0.00	0.00	0.00	0.00
22	ER4b	ExonRegion	0	0.73	0.00	0.33	0.00	0.00	0.00	0.00
23	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E5b_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER6b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E6a_E6c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E6b_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER6c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER6d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER7a	ExonRegion	0	0.22	0.00	0.96	0.00	0.62	0.00	0.00
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.26	0.00	0.00
38	E8_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E8a_E8b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER8b	ExonRegion	0	0.00	0.00	0.00	0.00	0.28	0.00	0.00
41	E8_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
42	ER8c	ExonRegion	0	0.00	0.00	0.17	0.00	0.16	0.30	0.08
43	E8b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E8b_E12a	KnownJunction	0	0.00	1.00	0.00	0.00	0.00	0.00	0.00
45	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E10_Aa	NovelBoundary	0	1015.48	670.95	957.81	652.03	797.97	567.11	696.23
48	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E10_Da	NovelBoundary	0	1520.10	974.07	1050.63	884.09	470.72	686.23	932.42
50	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E11a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER12a	ExonRegion	0	0.19	0.30	0.17	0.00	0.13	0.00	0.00
54	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.00	0.00
56	E13_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.95	0.00	0.00
57	ER13b	ExonRegion	0	0.00	0.00	0.00	0.00	0.22	0.00	0.00
58	E13_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER13c	ExonRegion	0	4.95	2.49	2.93	1.40	7.35	1.78	1.29
61	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER16a	ExonRegion	0	0.00	0.00	0.08	0.00	0.00	0.00	0.00
67	ER17a	ExonRegion	0	4.05	0.82	3.77	0.42	2.92	0.00	0.00
68	E17_Da	NovelBoundary	0	8.68	0.00	9.20	0.00	5.42	0.00	0.00
69	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER18a	ExonRegion	0	0.59	0.00	3.31	0.00	4.51	0.00	0.00
71	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	E19_Aa	NovelBoundary	0	173.86	58.06	325.07	62.12	162.66	85.22	52.02
73	ER19a	ExonRegion	0	0.02	0.00	0.02	0.00	0.00	0.00	0.00