Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FLT4	Gene	0	1.38	8.06	0.21	0.43	15.37	0.65	0.04
2	376868	Transcript	0	0.00	0.19	0.00	0.00	0.24	0.00	0.00
3	393347	Transcript	0	1.02	3.07	0.89	0.26	16.92	0.35	0.14
4	261937	Transcript	0	0.65	6.58	0.09	0.38	17.03	0.17	0.00
5	ER1a	ExonRegion	0	0.00	1.04	0.31	0.00	1.47	0.00	0.00
6	E1a_E2a	KnownJunction	0	0.00	1.29	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	0.36	3.38	0.19	0.00	3.84	0.96	0.00
8	E2a_E3a	KnownJunction	0	1.02	4.02	0.73	0.00	8.94	0.00	0.00
9	ER3a	ExonRegion	0	0.57	10.36	0.07	0.65	10.24	0.38	0.00
10	E3a_E4a	KnownJunction	0	0.00	13.29	0.00	1.49	14.87	0.00	0.00
11	ER4a	ExonRegion	0	0.58	15.07	0.00	1.46	14.80	0.00	0.00
12	E4a_E5a	KnownJunction	0	0.68	15.68	0.00	1.68	15.24	0.00	0.00
13	ER5a	ExonRegion	0	1.47	13.42	0.00	1.50	15.41	0.56	0.00
14	E5a_E6a	KnownJunction	0	1.79	12.48	0.00	0.00	20.45	0.00	0.00
15	ER6a	ExonRegion	0	3.62	8.04	0.28	0.68	15.46	1.35	0.00
16	E6a_E7a	KnownJunction	0	4.77	6.86	0.72	0.00	22.57	0.00	0.00
17	ER7a	ExonRegion	0	2.93	8.22	0.32	0.00	16.89	1.07	0.00
18	E7a_E8a	KnownJunction	0	3.72	6.36	0.66	0.00	16.92	0.00	0.00
19	ER8a	ExonRegion	0	2.06	10.36	0.09	0.00	11.26	0.05	0.00
20	E8a_E9a	KnownJunction	0	0.82	7.99	0.00	0.00	9.61	0.00	0.00
21	ER9a	ExonRegion	0	1.80	11.91	0.15	0.00	17.15	0.79	0.12
22	E9a_E10a	KnownJunction	0	3.25	10.88	0.89	0.00	14.55	1.50	0.85
23	ER10a	ExonRegion	0	1.88	10.66	0.24	0.00	9.12	0.38	0.46
24	E10a_E11a	KnownJunction	0	0.00	9.22	0.68	0.00	9.45	0.00	0.64
25	ER11a	ExonRegion	0	0.91	17.85	0.32	0.00	13.90	0.73	0.07
26	E11a_E12a	KnownJunction	0	0.90	13.14	0.00	0.00	17.01	0.00	0.00
27	ER12a	ExonRegion	0	0.92	18.33	0.00	0.00	16.52	2.06	0.00
28	E12a_E13a	KnownJunction	0	0.00	11.98	0.00	0.00	20.06	6.08	0.00
29	ER13a	ExonRegion	0	1.14	8.01	0.00	0.52	12.29	1.95	0.00
30	E13a_E14a	KnownJunction	0	1.03	4.76	0.00	0.00	13.76	0.00	0.00
31	ER14a	ExonRegion	0	0.30	7.01	0.00	0.00	13.33	0.63	0.00
32	E14a_E15a	KnownJunction	0	0.78	10.61	0.00	0.00	17.61	0.00	0.00
33	ER15a	ExonRegion	0	1.89	14.17	0.39	0.00	12.86	0.00	0.00
34	E15a_E16a	KnownJunction	0	0.78	15.34	0.00	0.00	11.43	0.00	0.00
35	ER16a	ExonRegion	0	1.44	10.84	0.00	0.00	11.04	0.00	0.00
36	E16a_E17a	KnownJunction	0	1.29	3.78	0.00	0.00	3.50	0.00	0.00
37	ER17a	ExonRegion	0	2.22	8.89	0.00	0.61	14.34	0.00	0.00
38	E17a_E18a	KnownJunction	0	0.00	10.53	0.00	1.11	12.36	0.00	0.00
39	ER18a	ExonRegion	0	0.81	7.72	0.00	1.02	8.93	0.00	0.00
40	E18_Da	KnownBoundary	0	0.00	4.57	0.00	0.00	0.00	0.00	0.00
41	E18a_E20a	KnownJunction	0	1.69	5.67	0.00	0.00	5.16	0.00	0.00
42	ER18b	ExonRegion	0	0.00	0.58	0.00	0.00	0.71	0.00	0.00
43	E18b_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER20a	ExonRegion	0	0.65	7.03	0.00	0.00	13.09	0.00	0.00
46	E20a_E21a	KnownJunction	0	3.20	6.65	0.00	0.00	8.46	0.00	0.00
47	ER21a	ExonRegion	0	2.33	8.14	0.00	0.00	9.86	0.00	0.00
48	E21a_E22a	KnownJunction	0	1.55	4.60	0.00	0.00	8.46	0.00	0.00
49	ER22a	ExonRegion	0	1.57	6.73	0.00	0.00	13.17	0.84	0.00
50	E22a_E23a	KnownJunction	0	2.30	4.31	0.66	0.00	12.93	2.95	0.00
51	ER23a	ExonRegion	0	1.54	5.96	0.00	0.00	19.42	0.85	0.00
52	E23a_E24a	KnownJunction	0	2.22	11.17	0.00	0.00	9.20	1.31	0.00
53	ER24a	ExonRegion	0	2.58	14.03	0.84	0.00	25.55	4.29	0.00
54	E24a_E25a	KnownJunction	0	0.82	1.29	0.00	0.00	13.58	3.22	0.00
55	ER25a	ExonRegion	0	0.52	6.42	0.00	0.00	16.70	2.28	0.00
56	E25a_E26a	KnownJunction	0	1.03	2.63	0.89	0.00	9.24	2.41	0.00
57	ER26a	ExonRegion	0	0.00	4.71	0.00	0.00	19.45	1.13	0.00
58	E26a_E27a	KnownJunction	0	0.00	2.76	0.00	0.00	9.13	1.15	0.00
59	ER27a	ExonRegion	0	0.79	6.93	0.00	0.00	11.77	0.14	0.00
60	E27a_E28a	KnownJunction	0	1.03	7.70	0.00	0.00	9.41	0.00	0.00
61	ER28a	ExonRegion	0	2.43	9.21	0.00	0.00	21.33	0.36	0.00
62	E28a_E29a	KnownJunction	0	1.75	7.51	0.00	0.00	25.57	1.55	0.00
63	ER29a	ExonRegion	0	3.51	11.79	0.43	0.00	32.40	0.70	0.00
64	E29a_E30a	KnownJunction	0	3.97	12.77	0.00	0.00	30.98	1.66	0.00
65	ER30a	ExonRegion	0	1.95	9.89	0.19	1.10	38.48	0.47	0.00
66	E30a_E31a	KnownJunction	0	0.63	4.41	0.79	0.00	22.13	0.00	0.00
67	E30a_E32a	KnownJunction	0	0.00	5.67	0.00	0.00	14.78	0.00	0.00
68	E31_Aa	NovelBoundary	0	16.72	15.53	6.12	2.22	2.14	4.61	1.19
69	ER31a	ExonRegion	0	1.40	1.72	0.99	0.53	11.71	0.69	0.28
70	ER32a	ExonRegion	0	1.30	7.48	0.19	0.75	19.28	0.35	0.00