Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ANKHD1	Gene	0	290.70	316.14	324.35	768.75	242.44	645.42	167.91
2	261805	Transcript	0	36.38	51.26	40.75	117.91	32.05	70.72	20.90
3	253810	Transcript	0	1.48	0.00	0.01	0.00	5.57	0.00	0.00
4	310356	Transcript	0	3.81	4.94	7.52	10.19	5.03	21.25	4.51
5	360839	Transcript	1	117.65	144.51	137.67	431.40	80.76	558.68	64.36
6	297183	Transcript	0	118.82	99.47	123.96	191.51	52.53	255.58	95.50
7	394723	Transcript	0	0	0	0	0	0	0	0
8	394722	Transcript	0	6.21	12.06	3.12	15.39	3.20	14.34	3.94
9	310331	Transcript	1	16.48	42.30	3.50	9.95	3.13	15.36	6.86
10	IG15_AR2	ActiveIntergenicRegion	0	3.15	2.66	2.03	6.89	8.91	7.69	0.73
11	ER1a	ExonRegion	0	9.08	13.58	6.10	33.44	12.59	26.19	7.97
12	ER1b	ExonRegion	0	20.92	108.78	22.53	229.78	98.32	156.21	21.01
13	E1_Ac	KnownBoundary	0	12.48	138.29	15.09	274.41	3.23	217.48	23.19
14	ER1c	ExonRegion	0	32.48	133.34	39.23	239.30	48.27	187.27	25.05
15	E1a_E2a	KnownJunction	0	122.07	347.31	201.54	524.19	178.77	456.53	105.87
16	ER2a	ExonRegion	0	197.33	418.10	243.44	761.22	217.74	539.35	142.88
17	E2a_E3a	KnownJunction	0	242.15	386.35	250.83	814.76	214.92	558.67	151.07
18	E2a_E3b	KnownJunction	0	6.21	12.06	3.12	15.39	3.20	14.34	3.94
19	ER3a	ExonRegion	0	241.52	411.80	256.79	835.87	237.57	562.19	160.89
20	E3_Ab	KnownBoundary	0	245.36	430.93	266.38	827.23	264.95	577.67	159.59
21	ER3b	ExonRegion	0	270.39	512.48	325.53	962.57	363.84	644.84	187.70
22	E3a_E4a	KnownJunction	0	374.44	530.53	385.44	1066.03	443.93	632.96	194.43
23	ER4a	ExonRegion	0	340.44	530.84	418.92	1073.20	418.01	657.37	208.67
24	E4a_E5a	KnownJunction	0	355.66	579.65	453.18	1183.45	468.80	714.67	227.55
25	ER5a	ExonRegion	0	314.83	524.27	418.01	1017.04	410.53	609.27	215.53
26	E5a_E6a	KnownJunction	0	312.15	527.90	433.38	1013.21	485.35	597.15	233.26
27	ER6a	ExonRegion	0	297.39	455.71	368.33	979.27	392.14	567.64	205.97
28	E6a_E7a	KnownJunction	0	266.10	467.71	321.62	894.52	371.96	522.62	182.28
29	ER7a	ExonRegion	0	255.92	462.23	304.91	882.06	380.43	529.55	189.94
30	E7a_E8a	KnownJunction	0	257.76	443.41	281.49	754.49	433.42	504.96	183.17
31	ER8a	ExonRegion	0	284.16	424.14	341.80	821.83	328.21	519.82	191.39
32	E8a_E9a	KnownJunction	0	336.00	390.31	392.17	836.11	297.43	592.65	176.82
33	ER9a	ExonRegion	0	382.72	371.17	421.06	833.28	354.42	662.01	169.53
34	E9a_E10a	KnownJunction	0	296.25	331.91	349.43	712.23	260.75	592.38	145.58
35	ER10a	ExonRegion	0	248.09	400.44	336.79	811.81	266.93	593.82	167.63
36	E10a_E11a	KnownJunction	0	148.82	232.84	161.84	363.37	210.17	342.96	104.82
37	E10a_E12a	KnownJunction	0	90.29	166.69	136.73	428.99	55.51	197.70	54.72
38	ER11a	ExonRegion	0	144.03	225.96	147.76	365.03	225.32	336.48	92.42
39	E11_Da	KnownBoundary	0	40.41	97.57	46.85	127.06	74.37	145.31	22.56
40	E11a_E12a	KnownJunction	0	72.53	84.86	75.90	212.45	97.49	136.46	44.43
41	ER11b	ExonRegion	0	24.10	53.15	24.21	57.31	46.18	63.35	14.90
42	ER12a	ExonRegion	0	192.58	267.72	261.06	694.47	163.35	366.35	140.20
43	E12a_E13a	KnownJunction	0	184.51	241.20	223.60	595.54	123.77	362.92	129.40
44	E13_Aa	NovelBoundary	1	99.74	12.11	122.91	16.12	10.54	4.29	23.46
45	ER13a	ExonRegion	0	194.62	269.90	238.69	681.28	140.57	389.95	130.60
46	E13a_E14a	KnownJunction	0	174.59	250.94	219.55	650.24	128.73	348.91	106.83
47	ER14a	ExonRegion	0	210.55	259.70	260.88	688.19	175.42	433.45	150.72
48	E14a_E15a	KnownJunction	0	127.14	206.15	158.62	587.06	100.72	381.04	102.10
49	E14a_E15b	KnownJunction	0	21.43	25.54	32.45	81.19	9.68	46.44	5.13
50	I14	Intron	0	65.53	24.70	73.24	28.60	21.13	32.90	15.10
51	I14_SR1	SilentIntronRegion	0	63.90	37.89	70.94	37.03	24.78	36.28	21.36
52	I14_AR2	ActiveIntronRegion	0	83.04	26.25	90.77	37.59	24.79	42.50	19.28
53	ER15a	ExonRegion	0	147.65	217.31	183.02	598.13	139.13	381.96	102.06
54	E15_Ab	KnownBoundary	0	190.90	227.98	204.96	592.78	137.30	357.21	97.45
55	ER15b	ExonRegion	0	218.24	267.43	265.57	676.85	133.39	398.88	122.58
56	E15a_E16a	KnownJunction	0	189.76	220.29	236.68	539.00	97.40	360.70	109.31
57	E15a_E17a	KnownJunction	0	51.57	94.63	54.65	178.02	21.02	99.96	34.04
58	ER16a	ExonRegion	0	203.53	170.35	264.85	491.98	165.88	344.40	109.51
59	E16a_E17a	KnownJunction	0	175.13	153.06	193.05	414.33	200.58	273.97	112.82
60	ER17a	ExonRegion	0	205.23	284.26	250.20	731.34	194.77	462.55	170.27
61	E17a_E18a	KnownJunction	0	208.67	301.04	224.57	780.74	189.47	485.34	161.69
62	ER18a	ExonRegion	0	198.18	342.77	266.36	850.58	236.28	502.66	186.40
63	E18a_E19a	KnownJunction	0	187.68	320.51	279.17	857.62	238.34	513.11	163.68
64	ER19a	ExonRegion	0	221.41	317.41	279.23	837.10	210.53	516.80	164.21
65	E19a_E20a	KnownJunction	0	215.45	297.63	265.26	709.95	194.61	454.58	135.20
66	ER20a	ExonRegion	0	239.67	281.91	297.82	796.49	212.44	558.56	165.92
67	E20a_E21a	KnownJunction	0	276.50	259.40	332.75	828.80	211.12	568.56	148.70
68	E20a_E22a	NovelJunction	1	9.68	2.89	7.44	10.13	1.11	24.47	0.00
69	ER21a	ExonRegion	0	257.88	288.83	295.61	758.95	182.64	554.08	167.22
70	E21a_E22a	KnownJunction	0	304.09	305.85	325.34	837.01	189.82	557.49	171.20
71	ER22a	ExonRegion	0	298.85	301.07	309.61	768.92	203.29	589.46	152.42
72	E22a_E23a	KnownJunction	0	409.19	302.57	383.39	785.15	228.62	585.20	148.09
73	ER23a	ExonRegion	0	480.50	323.18	445.96	938.34	300.79	697.30	186.21
74	E23a_E24a	KnownJunction	0	521.88	255.46	508.72	861.85	228.11	559.85	163.72
75	E23a_E25a	NovelJunction	0	27.04	36.52	16.04	104.73	0.00	110.42	0.00
76	ER24a	ExonRegion	0	484.00	273.86	460.35	865.05	243.32	578.67	180.66
77	E24a_E25a	KnownJunction	0	435.71	255.41	426.57	844.48	223.59	599.70	174.23
78	ER25a	ExonRegion	0	365.02	269.05	395.31	768.16	222.31	631.35	147.12
79	E25a_E26a	KnownJunction	0	362.46	245.27	371.98	756.38	162.38	616.18	109.61
80	ER26a	ExonRegion	0	160.88	151.68	170.66	480.61	86.01	439.07	47.85
81	E26_Da	KnownBoundary	0	153.85	107.87	202.32	387.24	195.10	339.93	66.35
82	ER26b	ExonRegion	0	340.25	203.44	387.80	633.04	189.31	615.17	146.54
83	E26b_E28a	KnownJunction	0	458.49	279.97	519.24	744.92	205.77	771.59	189.25
84	ER27a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER28a	ExonRegion	0	327.67	298.32	418.52	769.40	204.05	637.27	170.61
86	E28a_E29a	KnownJunction	0	336.29	371.61	410.59	940.93	329.68	673.08	194.28
87	ER29a	ExonRegion	0	442.09	471.18	489.69	1200.51	355.17	876.66	251.78
88	E29a_E30a	KnownJunction	0	614.81	509.93	574.96	1300.62	459.44	946.94	289.47
89	ER30a	ExonRegion	0	625.25	499.34	613.12	1266.38	453.17	996.82	313.32
90	E30a_E31a	KnownJunction	0	680.97	400.51	634.11	1139.02	543.61	870.51	307.51
91	ER31a	ExonRegion	0	643.67	558.35	657.27	1452.40	489.92	1400.55	343.39
92	E31_Da	KnownBoundary	0	466.93	534.76	533.89	1390.15	516.98	1486.45	283.86
93	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	ER31b	ExonRegion	0	414.01	422.85	447.60	1140.38	348.41	1116.88	255.95
95	E31b_E33a	KnownJunction	0	294.93	345.05	294.59	1031.74	297.66	1195.97	197.30
96	E31b_E34a	KnownJunction	0	3.81	4.94	7.52	10.19	5.03	21.25	4.51
97	ER32a	ExonRegion	0	2.95	0.00	0.01	0.00	11.15	0.00	0.00
98	E32_Da	NovelBoundary	0	1387.33	709.20	972.15	570.24	818.63	555.93	698.17
99	ER33a	ExonRegion	0	208.81	266.56	225.20	777.56	186.46	762.45	128.38
100	E33a_E34a	KnownJunction	0	37.80	59.14	52.22	183.84	59.41	115.19	39.14
101	I33_SR1	SilentIntronRegion	1	85.15	29.65	39.79	50.55	19.45	52.18	7.91
102	E34_Aa	NovelBoundary	0	128.11	245.59	148.89	620.58	132.55	648.58	86.46
103	ER34a	ExonRegion	0	183.72	299.73	226.94	709.87	182.74	760.78	156.53
104	E34a_E35a	KnownJunction	0	232.11	394.73	228.40	784.80	192.03	811.28	149.62
105	ER35a	ExonRegion	0	319.15	369.69	351.42	860.92	263.74	967.58	209.50
106	E35a_E36a	KnownJunction	0	371.35	262.32	327.53	692.75	271.35	753.18	162.65
107	ER36a	ExonRegion	0	323.18	324.41	359.62	843.30	268.14	904.52	203.25
108	E36a_E37a	KnownJunction	0	189.28	222.83	217.77	567.72	176.98	633.76	97.73
109	E36a_E38a	KnownJunction	0	154.01	113.36	139.82	195.71	50.88	286.44	97.64
110	ER37a	ExonRegion	0	167.76	216.00	194.83	525.14	134.53	554.58	94.44
111	E37_Da	KnownBoundary	0	142.62	208.83	160.56	540.98	130.59	576.41	94.99
112	ER37b	ExonRegion	0	117.65	144.51	137.67	431.40	80.76	558.68	64.36
113	ER38a	ExonRegion	0	92.95	107.61	104.58	175.71	49.32	231.00	78.28
114	E38a_E40a	KnownJunction	0	109.50	77.45	127.48	203.10	57.40	249.29	110.58
115	ER39a	ExonRegion	0	15.90	36.67	3.41	8.42	3.92	14.26	6.75
116	E39a_E40a	KnownJunction	1	17.06	47.92	3.59	11.49	2.33	16.46	6.98
117	ER40a	ExonRegion	0	119.89	162.00	116.93	206.59	79.09	265.96	92.64
118	E40a_E41a	KnownJunction	0	105.50	156.24	93.87	180.45	65.61	247.12	67.16
119	ER41a	ExonRegion	0	58.37	129.74	54.72	128.72	25.63	170.20	44.37
120	IG16	Intergenic	0	22.54	30.62	14.42	28.56	3.95	24.48	12.92
121	IG16_AR1	ActiveIntergenicRegion	0	23.11	31.49	14.81	29.28	4.08	25.11	13.28