Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TCOF1	Gene	0	67.89	96.17	180.38	320.44	294.30	64.86	65.81
2	394269	Transcript	0	0.15	0.24	0.27	1.16	1.73	0.41	0.09
3	323668	Transcript	1	9.46	22.41	31.61	53.45	35.29	4.07	6.35
4	377797	Transcript	0	0	0	0	0	0	0	0
5	323753	Transcript	0	38.25	60.08	100.30	194.49	59.48	42.85	31.23
6	ER1a	ExonRegion	0	8.40	23.51	20.25	66.13	66.23	13.43	14.17
7	E1a_E2a	KnownJunction	0	20.01	39.67	31.27	110.10	10.67	29.24	9.86
8	ER2a	ExonRegion	0	47.16	75.56	95.45	203.54	63.17	46.87	34.45
9	E2a_E3a	KnownJunction	0	69.20	101.70	178.45	289.14	122.73	48.32	63.36
10	ER3a	ExonRegion	0	93.39	128.23	246.49	386.61	347.39	91.81	77.41
11	E3a_E4a	KnownJunction	0	71.97	109.39	202.08	358.69	236.06	97.60	65.49
12	ER4a	ExonRegion	0	87.66	118.01	217.81	369.51	240.47	95.61	65.00
13	E4a_E5a	KnownJunction	0	119.57	131.99	287.65	340.02	310.43	80.13	75.97
14	ER5a	ExonRegion	0	78.24	108.92	193.20	294.93	282.77	79.95	66.87
15	E5a_E6a	KnownJunction	0	47.75	84.41	132.14	201.12	210.26	44.14	41.72
16	ER6a	ExonRegion	0	51.18	81.12	135.17	224.03	272.38	34.61	56.78
17	E6a_E7a	KnownJunction	0	57.66	55.51	134.61	187.23	410.80	28.19	58.63
18	E6a_E8a	KnownJunction	1	9.46	22.41	31.61	53.45	35.29	4.07	6.35
19	ER7a	ExonRegion	0	35.71	47.94	85.47	130.42	139.42	22.24	31.06
20	E7a_E8a	KnownJunction	0	22.01	40.48	75.53	102.92	153.28	19.62	20.24
21	ER8a	ExonRegion	0	31.45	71.19	98.54	201.40	130.26	29.85	29.75
22	E8a_E9a	KnownJunction	1	30.06	82.28	108.48	228.41	153.62	22.24	29.80
23	ER9a	ExonRegion	0	28.83	75.94	85.98	222.82	152.96	31.46	33.88
24	E9a_E10a	KnownJunction	0	22.92	58.43	84.07	222.61	166.56	33.77	29.02
25	ER10a	ExonRegion	0	33.09	78.42	93.86	230.34	162.99	38.14	42.01
26	E10a_E11a	KnownJunction	0	30.21	82.78	111.67	262.54	189.49	41.65	56.52
27	ER11a	ExonRegion	0	38.23	81.31	130.53	251.00	184.18	44.16	54.75
28	E11a_E12a	KnownJunction	0	45.61	82.65	172.21	300.93	272.37	48.51	66.44
29	ER12a	ExonRegion	0	46.48	108.82	152.22	320.40	220.27	66.20	62.05
30	E12a_E13a	KnownJunction	0	67.69	120.80	198.33	342.73	284.03	90.72	71.03
31	E13_Aa	NovelBoundary	1	34.23	5.02	75.49	10.35	5.69	0.00	2.09
32	ER13a	ExonRegion	0	64.81	111.42	184.00	332.09	277.81	74.10	63.18
33	E13a_E14a	KnownJunction	0	69.20	119.56	241.88	346.39	395.10	62.55	96.19
34	ER14a	ExonRegion	0	68.38	129.12	240.14	417.16	337.54	78.12	92.56
35	E14_Da	NovelBoundary	1	48.32	1.55	123.23	2.47	0.00	1.37	0.00
36	E14a_E15a	KnownJunction	0	88.47	129.54	306.12	528.28	483.37	73.99	106.53
37	ER15a	ExonRegion	0	77.08	130.46	261.36	437.67	394.83	73.52	93.40
38	E15a_E16a	KnownJunction	0	74.57	106.22	260.75	416.74	378.27	62.98	91.72
39	E15a_E17a	NovelJunction	1	5.61	14.69	37.59	31.45	23.81	13.11	7.22
40	ER16a	ExonRegion	0	64.10	106.00	191.35	371.54	362.36	48.32	74.14
41	E16a_E17a	KnownJunction	0	73.00	97.23	241.18	341.81	462.07	53.95	79.44
42	ER17a	ExonRegion	0	61.67	111.85	189.05	318.01	321.04	55.62	72.30
43	E17a_E19a	KnownJunction	0	63.34	83.60	252.23	259.61	452.62	33.23	70.18
44	E17a_E20a	NovelJunction	0	0.95	6.96	12.78	24.38	0.00	2.49	4.44
45	ER18a	ExonRegion	0	0.15	0.24	0.27	1.16	1.73	0.41	0.09
46	ER19a	ExonRegion	0	57.07	85.74	176.68	339.18	350.25	61.49	74.61
47	E19a_E20a	KnownJunction	0	62.25	130.31	240.03	537.43	633.75	94.92	138.99
48	E20_Aa	NovelBoundary	1	25.54	3.10	6.70	4.23	1.13	0.00	1.66
49	ER20a	ExonRegion	0	83.93	119.05	207.08	451.65	438.24	84.07	101.24
50	E20_Da	NovelBoundary	1	23.25	1.26	2.08	3.82	0.00	0.00	2.84
51	E20a_E21a	KnownJunction	0	49.04	67.23	127.36	309.00	476.27	56.17	94.21
52	E20a_E22a	KnownJunction	0	38.25	60.08	100.30	194.49	59.48	42.85	31.23
53	I20	Intron	1	22.45	1.83	3.49	2.59	1.28	0.53	1.59
54	I20_SR1	SilentIntronRegion	1	21.50	1.00	3.73	2.80	1.66	0.00	1.14
55	I20_AR2	ActiveIntronRegion	1	27.56	1.32	4.27	2.74	1.17	0.00	1.82
56	I20_SR3	SilentIntronRegion	1	20.51	2.60	2.96	2.45	1.16	1.12	1.75
57	E21_Aa	NovelBoundary	1	18.51	0.00	5.29	5.17	1.01	1.66	2.18
58	ER21a	ExonRegion	0	66.53	70.26	142.14	306.56	469.27	45.47	82.73
59	E21a_E22a	KnownJunction	0	53.16	79.44	166.18	314.50	483.88	59.01	98.99
60	E22_Aa	NovelBoundary	1	50.62	11.22	16.21	12.30	0.90	3.70	2.41
61	ER22a	ExonRegion	0	123.92	135.71	272.20	490.91	509.57	93.57	102.34
62	E22_Da	NovelBoundary	1	19.99	4.44	8.92	4.61	12.56	0.00	1.42
63	E22a_E23a	KnownJunction	0	52.27	80.44	151.33	277.66	87.58	51.56	47.04
64	ER23a	ExonRegion	0	62.63	82.11	188.69	306.90	311.74	61.52	60.06
65	E23a_E24a	KnownJunction	0	89.37	104.85	250.95	357.20	512.97	75.92	83.02
66	I23	Intron	1	28.23	2.22	6.57	3.75	4.04	2.25	1.85
67	I23_AR1	ActiveIntronRegion	1	28.32	2.22	6.60	3.76	4.06	2.25	1.86
68	E24_Aa	NovelBoundary	1	21.10	3.21	5.89	1.33	8.07	0.00	1.69
69	ER24a	ExonRegion	0	126.61	125.61	309.69	478.57	364.35	106.03	95.17
70	E24_Da	NovelBoundary	1	38.67	2.92	5.53	3.17	5.21	1.39	2.97
71	E24a_E25a	KnownJunction	0	143.85	130.33	304.38	529.09	245.01	108.32	91.49
72	I24_AR1	ActiveIntronRegion	1	22.22	2.41	3.30	4.96	4.17	1.13	1.34
73	ER25a	ExonRegion	0	84.06	100.59	218.11	358.89	255.92	80.69	67.26
74	E25_Da	NovelBoundary	1	28.12	2.44	3.85	2.93	2.12	0.00	0.00
75	E25a_E26a	KnownJunction	0	23.22	65.07	113.25	292.04	139.93	87.15	43.14
76	ER26a	ExonRegion	0	78.65	124.68	195.95	532.20	413.64	142.84	69.61
77	E26_Da	NovelBoundary	1	34.43	1.42	3.23	2.47	0.00	0.00	0.54
78	E26a_E27a	KnownJunction	0	116.50	134.09	353.40	533.75	801.73	147.75	122.02
79	I26	Intron	1	21.41	0.49	2.55	1.83	0.50	0.33	0.09
80	I26_SR1	SilentIntronRegion	1	21.51	0.49	2.56	1.84	0.50	0.33	0.09
81	ER27a	ExonRegion	0	160.52	149.92	449.87	607.30	798.76	129.31	152.49
82	E27a_E28a	KnownJunction	0	175.95	128.44	459.00	614.43	812.59	126.01	160.20
83	I27	Intron	1	25.86	2.59	3.20	5.02	1.64	3.37	0.34
84	I27_SR1	SilentIntronRegion	1	25.98	2.61	3.22	5.05	1.65	3.38	0.34
85	E28_Aa	NovelBoundary	1	27.25	0.00	1.78	1.19	3.20	0.00	0.89
86	ER28a	ExonRegion	0	92.02	85.08	203.05	302.13	415.98	73.21	72.11
87	IG29	Intergenic	0	32.94	4.86	5.59	8.67	1.22	1.60	0.35
88	IG29_AR1	ActiveIntergenicRegion	0	28.03	4.95	4.42	6.96	0.88	1.32	0.40
89	IG29_SR1	SilentIntergenicRegion	0	31.05	3.90	7.53	12.98	1.38	2.55	0.43
90	IG29_SR3	SilentIntergenicRegion	0	52.56	7.28	4.10	2.74	1.80	0.00	0.00