Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FNIP1	Gene	0	99.60	79.81	106.57	125.60	42.10	180.20	84.97
2	307954	Transcript	0	0	0	0	0	0	0	0
3	307968	Transcript	1	13.44	27.74	65.64	103.76	0.00	256.37	21.54
4	379346	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	IG3_AR2	ActiveIntergenicRegion	0	3.29	2.09	6.56	10.89	0.54	8.80	0.03
6	ER1a	ExonRegion	0	16.19	33.56	14.85	40.29	3.41	37.06	12.26
7	E1a_E2a	KnownJunction	0	23.23	73.01	25.62	96.72	8.69	99.78	26.40
8	I1_AR1	ActiveIntronRegion	1	21.68	27.48	20.57	16.40	2.05	21.70	1.51
9	ER2a	ExonRegion	0	63.99	102.39	69.60	148.18	23.06	148.92	76.86
10	E2a_E3a	KnownJunction	0	38.22	89.59	61.51	153.06	20.29	159.16	89.03
11	E2a_E4a	NovelJunction	0	3.69	2.94	2.31	11.84	3.34	14.31	0.00
12	ER3a	ExonRegion	0	65.01	113.83	89.66	213.15	24.68	237.84	108.08
13	E3a_E4a	KnownJunction	0	76.44	134.56	111.49	239.89	31.40	224.45	139.82
14	I3_AR2	ActiveIntronRegion	1	19.98	1.21	5.93	2.49	2.43	3.68	0.67
15	I3_SR1	SilentIntronRegion	1	23.09	0.74	8.66	2.00	2.18	2.01	1.10
16	I3_AR3	ActiveIntronRegion	1	20.99	3.34	4.86	2.85	1.86	2.25	1.38
17	ER4a	ExonRegion	0	95.91	160.51	133.73	268.69	42.54	281.70	142.07
18	E4a_E5a	KnownJunction	0	90.74	121.58	134.75	257.04	42.79	335.35	105.24
19	E4a_E6a	NovelJunction	0	0.00	1.63	1.52	6.15	0.00	8.07	0.00
20	ER5a	ExonRegion	0	79.06	152.25	128.91	284.82	35.12	307.41	125.65
21	E5a_E6a	KnownJunction	0	71.67	124.79	117.91	254.60	28.86	227.93	121.06
22	ER6a	ExonRegion	0	91.83	121.42	139.16	230.62	40.83	259.90	102.93
23	E6a_E7a	KnownJunction	1	73.35	78.53	68.37	93.00	38.96	9.78	43.30
24	E6a_E8a	KnownJunction	1	13.44	27.74	65.64	103.76	0.00	256.37	21.54
25	ER7a	ExonRegion	1	60.02	82.99	64.01	85.05	25.12	12.19	61.46
26	E7a_E8a	KnownJunction	1	46.73	91.79	56.19	86.45	25.77	14.66	60.58
27	E8_Aa	NovelBoundary	1	7.09	5.25	28.12	3.03	0.00	3.59	9.13
28	ER8a	ExonRegion	0	80.39	129.37	112.16	193.82	32.86	214.60	85.10
29	E8a_E9a	KnownJunction	0	89.12	124.76	117.23	198.69	23.40	208.74	80.20
30	ER9a	ExonRegion	0	96.17	140.77	124.70	197.60	26.20	175.64	82.79
31	E9a_E10a	KnownJunction	0	98.54	113.15	134.91	179.70	13.72	175.22	72.79
32	ER10a	ExonRegion	0	96.96	86.48	129.79	156.98	26.50	164.70	84.72
33	E10a_E11a	KnownJunction	0	67.86	58.77	98.90	124.92	25.20	108.08	77.03
34	ER11a	ExonRegion	0	100.63	71.62	104.50	130.15	30.94	127.18	82.91
35	E11a_E12a	KnownJunction	0	110.85	57.06	103.68	124.40	48.99	141.18	102.44
36	I11_AR2	ActiveIntronRegion	1	16.08	24.76	10.68	6.91	7.10	6.13	8.98
37	I11_SR2	SilentIntronRegion	1	18.66	24.12	10.31	5.97	4.92	6.83	9.30
38	I11_AR3	ActiveIntronRegion	1	19.36	20.90	9.17	6.82	6.86	5.39	12.32
39	E12_Aa	NovelBoundary	1	30.63	18.02	10.96	8.94	14.34	3.48	9.75
40	ER12a	ExonRegion	0	176.61	87.96	169.64	166.20	47.73	192.46	113.37
41	E12a_E13a	KnownJunction	0	162.31	79.26	149.52	153.61	41.86	199.23	96.69
42	I12	Intron	1	20.27	6.91	8.03	3.43	2.22	1.85	2.10
43	I12_AR1	ActiveIntronRegion	1	28.87	11.06	10.85	5.56	2.85	3.20	3.08
44	ER13a	ExonRegion	0	137.29	68.12	137.62	120.89	49.94	140.82	96.70
45	E13a_E14a	KnownJunction	0	64.81	44.98	103.02	97.93	25.13	96.43	80.46
46	ER14a	ExonRegion	0	70.16	78.24	101.44	112.88	34.78	141.64	87.46
47	E14_Da	KnownBoundary	0	50.84	75.45	84.05	121.48	33.54	98.70	65.38
48	E14a_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E14_Ab	KnownBoundary	0	59.25	94.13	90.20	118.63	21.97	144.24	85.17
50	ER14b	ExonRegion	0	76.94	124.98	123.83	165.30	31.10	177.67	108.64
51	ER14c	ExonRegion	0	88.98	91.63	107.66	143.10	42.41	160.98	97.83
52	E14b_E15a	KnownJunction	0	109.37	80.57	95.30	162.44	56.87	191.89	88.44
53	ER15a	ExonRegion	0	102.33	85.19	87.16	160.98	53.57	174.66	98.65
54	E15a_E16a	KnownJunction	0	97.85	76.58	76.28	126.11	58.95	127.92	85.13
55	ER16a	ExonRegion	0	83.38	82.13	89.06	121.67	51.31	149.68	82.25
56	E16a_E17a	KnownJunction	0	85.54	56.51	96.55	107.28	52.26	141.58	73.13
57	ER17a	ExonRegion	0	135.57	56.29	107.13	95.93	62.16	147.42	62.88
58	E17a_E18a	KnownJunction	1	160.39	36.57	115.52	102.43	96.57	152.52	62.33
59	E18_Aa	NovelBoundary	1	27.87	15.11	6.73	1.63	1.01	6.54	5.20
60	ER18a	ExonRegion	0	111.95	66.98	109.49	101.35	47.41	203.06	80.21