Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAPGEF6	Gene	0	57.32	31.89	90.10	64.20	48.62	39.14	22.72
2	307984	Transcript	0	9.71	11.52	19.05	15.08	0.00	5.52	6.43
3	308008	Transcript	0	0	0	0	0	0	0	0
4	358714	Transcript	0	0.00	0.00	0.10	0.00	0.00	0.00	0.00
5	296859	Transcript	0	59.47	36.09	86.71	89.43	70.71	54.89	24.49
6	395229	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	39.68	19.94	32.77	36.99	16.63	27.04	9.20
8	E1a_E2a	KnownJunction	0	50.37	29.29	55.54	51.55	40.34	34.17	17.77
9	ER2a	ExonRegion	0	48.45	35.28	73.17	73.61	39.52	37.75	15.35
10	E2a_E3a	KnownJunction	0	45.76	33.05	74.02	78.21	19.00	33.04	12.40
11	ER3a	ExonRegion	0	43.42	35.68	82.12	64.27	17.49	37.40	14.59
12	E3a_E4a	KnownJunction	0	40.39	40.46	83.97	52.61	19.06	42.00	16.80
13	ER4a	ExonRegion	0	52.81	34.46	96.45	71.34	30.41	39.09	17.32
14	E4a_E5a	KnownJunction	0	60.03	28.74	90.22	60.82	34.35	33.66	13.84
15	E4a_E6a	NovelJunction	0	0.68	11.82	4.05	5.74	0.00	4.69	0.89
16	ER5a	ExonRegion	0	49.90	35.98	95.08	62.85	25.45	42.80	21.50
17	E5a_E6a	KnownJunction	0	45.85	41.98	94.24	66.81	18.65	52.66	22.80
18	ER6a	ExonRegion	0	49.90	45.19	90.39	74.79	35.49	44.26	22.98
19	E6a_E7a	KnownJunction	0	30.14	54.57	81.35	75.67	39.72	47.60	34.38
20	ER7a	ExonRegion	0	34.82	54.51	73.09	79.04	29.26	41.11	23.41
21	E7a_E8a	KnownJunction	1	24.02	44.37	80.53	61.01	35.04	48.64	19.99
22	ER8a	ExonRegion	0	33.23	42.92	77.16	75.26	32.10	35.38	23.19
23	E8a_E9a	KnownJunction	0	29.98	35.12	91.67	64.40	33.75	26.32	21.78
24	ER9a	ExonRegion	0	36.34	29.00	76.97	60.40	34.60	26.51	22.19
25	E9a_E10a	KnownJunction	0	37.44	30.21	92.82	62.55	37.76	26.02	17.96
26	ER10a	ExonRegion	0	64.83	32.30	108.31	58.07	40.54	25.88	22.35
27	E10a_E11a	KnownJunction	0	79.44	38.91	132.88	77.40	48.11	33.42	29.61
28	ER11a	ExonRegion	0	91.93	36.04	131.87	72.27	47.45	41.14	25.46
29	E11a_E12a	KnownJunction	0	72.87	34.68	115.32	59.68	41.93	35.00	22.89
30	ER12a	ExonRegion	0	66.28	44.75	117.20	64.59	40.73	38.68	18.45
31	E12a_E13a	KnownJunction	0	47.18	33.31	103.44	79.76	52.61	29.13	19.92
32	ER13a	ExonRegion	0	43.05	35.40	100.85	61.29	39.14	28.00	18.66
33	E13a_E14a	KnownJunction	1	28.52	21.83	92.75	54.10	37.21	26.10	10.83
34	ER14a	ExonRegion	0	28.72	29.92	82.43	54.87	32.38	22.63	17.27
35	E14_Da	KnownBoundary	1	11.70	18.86	36.40	25.14	12.91	9.65	9.99
36	E14a_E14b	KnownJunction	0	19.43	23.04	38.10	30.15	0.00	11.04	12.87
37	E14_Ab	KnownBoundary	1	8.48	7.59	25.84	14.52	22.78	4.66	6.78
38	ER14b	ExonRegion	0	28.69	29.16	73.83	64.22	34.96	28.81	22.82
39	ER14c	ExonRegion	0	33.34	29.07	76.69	61.04	34.39	25.90	23.02
40	E14_Db	KnownBoundary	1	10.82	2.76	25.38	27.58	15.98	18.33	10.22
41	E14b_E14c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E14_Ac	KnownBoundary	1	19.38	13.14	30.52	18.67	16.48	4.82	6.23
43	ER14d	ExonRegion	0	34.58	26.00	79.52	53.87	32.07	20.60	19.83
44	ER14e	ExonRegion	0	46.36	26.60	87.66	55.68	38.03	21.01	18.22
45	E14c_E15a	KnownJunction	0	65.07	26.82	106.97	52.61	49.10	24.47	22.30
46	ER15a	ExonRegion	0	56.22	32.20	116.46	73.36	45.68	42.80	33.22
47	E15a_E16a	KnownJunction	0	81.95	30.71	130.44	82.49	42.21	47.76	25.44
48	ER16a	ExonRegion	0	60.36	28.16	102.72	69.91	48.33	46.07	30.14
49	E16a_E17a	KnownJunction	0	44.73	20.31	80.79	61.82	28.29	40.44	16.70
50	ER17a	ExonRegion	0	52.09	29.62	92.47	69.96	50.00	35.53	25.25
51	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E17a_E20a	KnownJunction	1	42.54	12.40	78.05	61.28	30.66	19.38	18.66
53	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER20a	ExonRegion	0	43.51	32.08	95.20	62.53	43.47	33.99	24.98
58	E20a_E21a	KnownJunction	0	40.42	28.92	96.40	56.35	31.35	53.68	18.59
59	ER21a	ExonRegion	0	64.41	31.90	124.76	62.93	48.64	41.71	25.76
60	E21a_E22a	KnownJunction	1	69.35	38.78	170.04	83.82	49.45	50.95	20.69
61	ER22a	ExonRegion	0	116.73	41.96	168.36	73.82	72.96	45.62	33.01
62	E22a_E23a	KnownJunction	0	131.17	46.76	165.70	97.64	76.72	48.13	39.58
63	ER23a	ExonRegion	0	127.50	58.68	159.79	103.56	72.38	45.13	37.11
64	E23a_E24a	KnownJunction	0	0.00	2.73	9.20	7.88	11.62	1.21	4.76
65	E23a_E25a	KnownJunction	1	86.70	43.37	102.40	63.77	30.98	17.82	33.79
66	E24a_E25a	KnownJunction	1	4.67	0.00	5.30	11.89	9.29	2.95	0.89
67	ER24a	ExonRegion	0	3.43	1.77	8.50	12.47	10.39	2.25	3.99
68	ER25a	ExonRegion	0	92.98	55.06	122.22	93.56	72.85	57.67	38.74
69	E25a_E26a	KnownJunction	0	86.64	56.06	101.71	111.62	35.22	75.04	38.12
70	ER26a	ExonRegion	0	94.16	51.94	142.71	110.28	90.14	75.90	40.34
71	E26a_E27a	KnownJunction	0	79.71	56.54	110.78	97.61	60.84	64.32	24.55
72	ER27a	ExonRegion	0	95.46	52.55	139.46	101.65	77.65	84.70	38.37
73	E27a_E28a	KnownJunction	1	3.05	1.31	0.00	12.22	0.00	12.57	0.00
74	E27a_E29a	KnownJunction	0	62.45	39.04	88.23	70.84	49.06	67.48	25.18
75	ER28a	ExonRegion	0	5.12	3.16	7.72	7.53	3.16	5.20	1.90
76	ER29a	ExonRegion	0	45.33	37.84	72.15	70.85	64.55	41.25	25.47
77	E29a_E30a	KnownJunction	0	63.51	29.77	92.36	73.36	83.29	32.43	23.58
78	ER30a	ExonRegion	0	79.22	34.16	112.05	79.88	63.84	48.53	29.42
79	E30a_E32a	KnownJunction	0	54.28	34.34	54.36	85.09	69.87	42.69	24.51
80	ER30b	ExonRegion	0	0.00	0.00	0.68	0.00	0.00	0.00	0.00
81	ER31a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	ER32a	ExonRegion	0	60.36	36.03	81.02	92.35	77.51	44.29	29.26
83	E32a_E33a	KnownJunction	0	66.24	48.42	98.77	125.65	85.94	69.38	30.98
84	ER33a	ExonRegion	0	52.70	23.76	74.65	53.21	55.49	40.39	17.99
85	E33_Da	NovelBoundary	0	44.91	16.34	46.52	22.70	49.61	20.82	6.59
86	I33	Intron	0	32.60	13.20	46.87	30.10	33.32	30.12	13.71
87	I33_AR1	ActiveIntronRegion	1	63.84	26.29	93.02	59.83	67.17	60.57	27.13
88	ER34a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00