Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SEMA6A	Gene	0	116.52	26.98	76.72	21.43	500.63	237.83	2.19
2	257414	Transcript	0	24.69	5.28	24.33	4.12	236.44	66.04	0.53
3	282394	Transcript	0	0.45	0.00	0.00	0.00	0.29	0.00	0.00
4	343348	Transcript	0	2.16	1.71	1.89	0.82	19.33	13.16	0.07
5	IG36_AR1	ActiveIntergenicRegion	0	4.64	2.95	0.65	4.41	30.87	26.72	0.00
6	ER1a	ExonRegion	0	1.83	1.91	0.62	0.22	12.35	16.98	0.00
7	E1_Ab	KnownBoundary	0	0.63	2.36	2.17	1.19	10.37	32.72	0.00
8	ER1b	ExonRegion	0	54.53	23.74	31.83	11.22	117.00	106.16	0.83
9	E1a_E2a	KnownJunction	0	112.06	31.55	84.38	22.70	479.80	218.07	1.49
10	I1_AR2	ActiveIntronRegion	1	0.91	9.37	1.31	0.54	1.49	2.81	0.00
11	I1_AR3	ActiveIntronRegion	0	23.94	4.93	10.02	1.07	16.26	11.05	0.54
12	I1_AR4	ActiveIntronRegion	0	28.32	7.95	13.69	4.61	24.71	13.25	0.31
13	ER2a	ExonRegion	0	134.10	40.01	95.11	16.16	503.01	228.41	1.90
14	E2a_E3a	KnownJunction	0	102.73	29.06	86.02	19.78	388.62	259.39	0.00
15	ER3a	ExonRegion	0	178.21	33.95	112.45	15.50	626.33	269.10	1.96
16	E3a_E4a	KnownJunction	0	236.78	21.54	130.17	20.24	980.74	268.08	2.18
17	E3a_E5a	NovelJunction	0	5.66	2.97	2.05	1.08	1.11	13.64	0.00
18	ER4a	ExonRegion	0	179.35	32.10	133.57	16.76	782.02	270.72	1.21
19	E4a_E5a	KnownJunction	1	136.66	37.17	122.51	13.30	710.28	226.19	0.00
20	ER5a	ExonRegion	0	208.78	32.34	149.99	16.09	825.61	226.11	1.87
21	E5a_E6a	KnownJunction	0	242.20	27.74	144.75	15.50	948.92	221.04	3.61
22	ER6a	ExonRegion	0	195.76	35.11	165.68	21.82	896.43	266.58	1.22
23	E6a_E7a	KnownJunction	0	164.43	35.68	136.59	25.57	759.78	271.72	2.06
24	ER7a	ExonRegion	0	207.28	54.27	138.34	32.90	924.76	251.15	2.57
25	E7a_E8a	KnownJunction	1	192.45	60.29	158.68	53.40	930.21	267.22	2.92
26	ER8a	ExonRegion	0	183.52	43.57	145.82	34.42	1020.06	263.26	3.63
27	E8a_E9a	KnownJunction	1	210.79	49.86	122.22	26.41	1045.75	205.18	1.66
28	ER9a	ExonRegion	0	191.29	48.84	126.40	35.41	951.74	268.38	4.73
29	E9a_E10a	KnownJunction	0	170.25	48.05	138.82	38.23	1029.12	279.84	2.08
30	ER10a	ExonRegion	0	180.02	53.72	131.01	36.71	1008.98	307.87	6.16
31	E10a_E11a	KnownJunction	0	210.98	40.69	146.45	45.19	1149.02	326.98	5.86
32	ER11a	ExonRegion	0	155.74	38.47	123.01	33.38	815.41	337.24	4.82
33	E11a_E12a	KnownJunction	0	120.27	31.89	102.39	32.94	683.66	323.58	3.25
34	ER12a	ExonRegion	0	148.52	36.71	113.71	35.11	949.86	306.91	3.55
35	E12a_E13a	KnownJunction	0	124.66	37.57	90.27	34.87	729.05	261.03	3.18
36	E12a_E14a	NovelJunction	1	11.13	7.70	5.19	1.35	9.45	28.86	0.00
37	ER13a	ExonRegion	0	132.43	29.58	119.50	34.74	809.53	249.77	2.73
38	E13a_E14a	KnownJunction	1	167.48	27.16	172.33	45.81	802.08	229.83	1.46
39	ER14a	ExonRegion	0	148.10	46.78	137.46	32.53	854.40	273.61	1.73
40	E14a_E15a	KnownJunction	0	171.44	45.03	151.51	44.78	973.29	266.71	3.38
41	ER15a	ExonRegion	0	176.36	44.08	171.64	41.66	1132.44	355.61	1.90
42	E15a_E16a	KnownJunction	0	125.79	35.83	115.77	43.24	996.62	291.42	0.86
43	ER16a	ExonRegion	0	91.94	28.17	93.00	23.27	921.61	211.41	0.95
44	E16a_E17a	KnownJunction	0	98.89	20.02	91.63	18.15	831.82	260.95	1.96
45	E16a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	E16b_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER16b	ExonRegion	0	1.28	0.00	0.00	0.00	0.81	0.00	0.00
48	E17a_E18a	KnownJunction	0	0.93	0.00	1.61	0.00	3.43	0.00	0.00
49	ER17a	ExonRegion	0	20.89	6.25	25.45	2.02	330.54	67.43	0.67
50	ER18a	ExonRegion	0	1.81	0.14	2.09	0.42	15.26	1.83	0.00
51	E18a_E19b	KnownJunction	0	0.90	0.00	0.89	0.00	1.13	0.00	0.00
52	I18_AR3	ActiveIntronRegion	0	24.44	0.00	7.82	2.38	33.67	0.00	0.59
53	I18_SR2	SilentIntronRegion	0	25.31	1.34	8.41	2.45	35.13	1.35	1.04
54	ER19a	ExonRegion	0	4.05	1.93	1.57	0.34	32.03	2.79	0.00
55	ER19b	ExonRegion	0	118.40	36.25	93.37	30.83	761.36	277.85	1.42
56	E19a_E21a	KnownJunction	0	157.15	39.88	111.64	41.42	833.98	415.96	4.29
57	ER20a	ExonRegion	0	0.06	0.00	0.00	0.00	0.07	0.00	0.00
58	ER21a	ExonRegion	0	113.92	23.09	66.59	20.64	431.22	256.27	2.21
59	E21_Da	KnownBoundary	0	7.18	5.52	6.06	5.77	11.50	82.17	1.30
60	ER21b	ExonRegion	0	2.42	3.19	4.09	2.12	25.97	36.68	0.20
61	IG35_AR11	ActiveIntergenicRegion	0	5.62	1.97	8.98	6.08	6.33	4.06	2.61
62	IG35_AR7	ActiveIntergenicRegion	0	4.44	2.18	7.90	2.37	8.25	1.56	4.18
63	IG35_SR6	SilentIntergenicRegion	0	8.61	1.52	6.77	3.71	11.63	1.18	7.71
64	IG35_AR6	ActiveIntergenicRegion	0	8.79	1.52	7.49	2.57	12.31	0.79	5.76
65	IG35_AR5	ActiveIntergenicRegion	0	8.51	2.98	11.02	6.94	6.67	0.61	2.68
66	IG35_AR1	ActiveIntergenicRegion	0	7.02	0.76	7.00	1.33	21.64	1.23	4.48