Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FRYL	Gene	0	76.89	43.00	75.71	64.38	46.92	25.69	53.80
2	358350	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.01
3	264319	Transcript	1	2.15	5.15	4.49	7.40	7.96	2.47	8.50
4	302806	Transcript	0	0.87	0.76	1.11	0.29	0.69	0.21	0.46
5	ER1a	ExonRegion	0	18.20	19.70	19.38	23.24	3.97	9.00	6.86
6	E1a_E2a	KnownJunction	1	40.81	26.06	37.03	40.72	8.67	12.78	13.21
7	ER2a	ExonRegion	0	41.97	42.24	41.44	40.50	9.28	20.58	23.91
8	E2a_E3a	KnownJunction	0	40.29	41.40	56.43	45.11	16.00	18.20	31.59
9	ER3a	ExonRegion	0	44.76	46.56	54.18	47.93	16.10	23.82	39.76
10	E3a_E5a	KnownJunction	0	53.56	45.32	48.20	32.73	11.02	27.66	30.27
11	ER4a	ExonRegion	0	0.00	0.45	0.46	0.00	0.20	0.46	0.00
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.63	0.00	0.00	0.00	0.00
13	ER5a	ExonRegion	0	51.64	44.52	55.60	49.06	19.29	25.22	36.09
14	E5a_E6a	KnownJunction	0	44.21	39.22	40.88	44.02	24.44	26.61	25.44
15	ER6a	ExonRegion	0	46.49	53.43	63.92	54.89	20.64	22.36	36.62
16	E6a_E7a	KnownJunction	0	47.05	60.21	73.72	65.37	20.31	17.13	42.22
17	E7_Aa	NovelBoundary	1	23.95	0.00	33.43	0.00	0.88	0.00	0.00
18	ER7a	ExonRegion	0	52.69	47.47	65.45	71.04	24.27	20.00	34.32
19	E7a_E8a	KnownJunction	0	56.11	52.10	64.72	68.27	24.02	16.54	39.33
20	ER8a	ExonRegion	0	59.24	39.09	72.98	69.93	31.54	15.47	42.10
21	E8_Da	KnownBoundary	0	2.34	4.36	4.07	3.58	2.01	1.47	1.93
22	E8a_E9a	KnownJunction	1	55.79	37.46	63.49	57.51	23.31	4.56	32.17
23	ER8b	ExonRegion	0	2.60	1.83	2.24	0.88	1.87	0.18	1.38
24	ER9a	ExonRegion	0	56.93	35.37	64.14	48.41	17.52	13.98	41.63
25	E9a_E10a	KnownJunction	0	61.52	20.57	62.81	40.45	17.61	15.30	30.84
26	ER10a	ExonRegion	0	57.98	27.01	62.03	32.33	22.50	13.00	34.96
27	E10a_E11a	KnownJunction	0	52.24	20.39	63.16	28.61	19.57	11.52	41.16
28	ER11a	ExonRegion	0	56.74	21.97	67.97	29.88	20.77	17.17	44.14
29	E11a_E12a	KnownJunction	0	53.04	19.62	77.11	26.58	19.83	19.35	46.78
30	ER12a	ExonRegion	0	61.59	14.68	87.38	27.45	23.12	12.33	45.09
31	E12a_E13a	KnownJunction	1	59.82	5.94	82.87	25.28	14.62	5.15	36.29
32	ER13a	ExonRegion	0	57.13	20.95	85.02	34.98	16.12	11.11	36.99
33	E13a_E14a	KnownJunction	0	65.91	32.55	98.29	43.64	25.29	17.88	40.39
34	ER14a	ExonRegion	0	56.63	25.23	97.88	31.17	16.86	15.11	36.69
35	E14a_E15a	KnownJunction	1	22.03	5.83	86.75	32.29	0.92	21.41	27.32
36	ER15a	ExonRegion	0	63.73	19.85	82.38	43.88	21.74	21.21	31.67
37	E15a_E16a	KnownJunction	0	76.61	22.86	81.62	46.24	31.01	13.96	38.90
38	ER16a	ExonRegion	0	82.67	33.18	91.84	58.31	30.19	18.67	41.24
39	E16a_E17a	KnownJunction	0	90.96	30.66	82.77	63.85	30.25	21.57	42.31
40	ER17a	ExonRegion	0	85.02	33.08	91.15	50.38	26.21	19.93	41.09
41	E17a_E18a	KnownJunction	0	64.44	28.79	80.23	40.47	27.18	19.64	30.50
42	ER18a	ExonRegion	0	58.24	33.29	86.68	59.96	23.72	21.58	42.41
43	E18a_E19a	KnownJunction	1	62.52	37.54	89.60	64.69	29.21	10.75	42.99
44	ER19a	ExonRegion	0	66.31	42.56	87.67	69.23	26.60	24.60	53.16
45	E19a_E20a	KnownJunction	1	81.86	48.84	96.38	62.04	34.63	8.42	47.39
46	ER20a	ExonRegion	0	98.96	42.61	101.27	69.68	37.49	18.40	56.13
47	E20a_E21a	KnownJunction	0	97.62	40.04	89.37	65.64	37.07	18.41	48.25
48	ER21a	ExonRegion	0	95.30	49.88	96.54	84.94	40.44	19.71	52.90
49	E21a_E22a	KnownJunction	1	91.41	68.70	101.38	85.53	38.20	16.40	56.06
50	ER22a	ExonRegion	1	55.91	55.62	76.23	72.65	37.68	14.07	49.60
51	E22a_E23a	KnownJunction	1	56.86	59.95	81.31	65.18	30.71	14.42	54.63
52	ER23a	ExonRegion	1	62.61	55.23	84.89	72.08	30.71	13.15	54.45
53	E23a_E24a	KnownJunction	0	47.08	44.69	73.96	66.16	32.18	15.46	43.60
54	ER24a	ExonRegion	0	83.06	56.81	107.25	76.09	42.72	23.08	65.61
55	E24a_E25a	KnownJunction	0	83.48	61.24	89.83	73.66	48.36	22.83	64.74
56	ER25a	ExonRegion	0	51.85	43.91	68.75	66.95	30.33	21.23	53.70
57	E25a_E26a	KnownJunction	0	45.01	44.11	67.91	56.84	31.65	22.65	46.92
58	ER26a	ExonRegion	0	62.46	47.86	66.41	68.19	31.29	16.36	46.29
59	E26a_E27a	KnownJunction	0	83.17	49.50	77.27	63.72	31.88	17.74	46.10
60	ER27a	ExonRegion	0	70.79	44.07	76.07	52.46	27.65	16.59	48.69
61	E27a_E28a	KnownJunction	0	55.41	33.94	62.61	34.46	24.21	18.20	41.98
62	ER28a	ExonRegion	0	71.29	45.66	70.43	46.52	28.07	20.59	44.59
63	E28a_E29a	KnownJunction	0	84.00	43.19	71.31	61.77	40.92	22.16	36.72
64	ER29a	ExonRegion	0	90.47	50.88	89.96	60.96	39.46	18.21	54.94
65	E29a_E30a	KnownJunction	1	109.34	44.48	86.41	80.68	32.46	14.79	52.17
66	ER30a	ExonRegion	0	133.96	67.84	103.84	95.09	51.91	28.88	75.60
67	E30a_E31a	KnownJunction	0	119.03	60.37	70.44	60.82	63.05	24.36	65.02
68	ER31a	ExonRegion	0	93.60	42.87	68.16	54.44	43.63	22.85	61.76
69	E31a_E32a	KnownJunction	0	55.81	35.15	51.17	54.18	36.68	16.48	57.40
70	ER32a	ExonRegion	0	40.39	27.82	45.57	47.86	26.07	15.80	45.65
71	E32a_E33a	KnownJunction	0	43.54	41.38	61.51	72.39	30.96	16.70	47.22
72	ER33a	ExonRegion	0	46.28	46.82	61.13	78.47	34.88	21.09	48.98
73	E33a_E34a	KnownJunction	0	47.18	48.89	45.88	49.74	37.16	23.64	41.29
74	ER34a	ExonRegion	0	66.00	60.62	71.92	84.96	41.95	23.21	56.53
75	E34a_E35a	KnownJunction	0	81.75	58.40	62.37	73.55	37.51	24.63	48.11
76	E35_Aa	NovelBoundary	1	30.24	0.00	24.13	1.35	1.15	0.00	0.00
77	ER35a	ExonRegion	0	62.54	64.64	61.67	70.78	40.44	21.08	51.40
78	E35a_E36a	KnownJunction	1	60.73	75.03	57.02	68.41	37.69	18.63	48.94
79	ER36a	ExonRegion	0	61.09	58.57	73.41	70.55	45.07	22.77	58.38
80	E36a_E37a	KnownJunction	0	46.88	42.77	63.43	68.54	54.84	21.39	52.15
81	E36a_E38a	NovelJunction	0	2.12	7.62	4.18	18.37	0.00	2.55	2.34
82	ER37a	ExonRegion	0	107.22	56.62	105.50	87.05	52.40	38.43	74.27
83	E37a_E38a	KnownJunction	0	113.96	59.37	116.82	92.76	57.89	43.60	76.57
84	ER38a	ExonRegion	0	103.40	65.67	104.80	92.19	53.72	49.66	78.04
85	E38a_E39a	KnownJunction	0	89.56	79.39	97.65	100.16	60.19	48.51	71.50
86	ER39a	ExonRegion	0	88.51	58.86	94.49	87.41	68.54	27.21	75.22
87	E39a_E40a	KnownJunction	1	62.59	37.88	67.40	64.29	67.04	9.27	67.03
88	E39a_E41a	NovelJunction	0	12.38	18.55	7.27	31.02	2.19	13.43	1.68
89	ER40a	ExonRegion	0	51.21	51.20	59.57	57.26	48.40	14.09	68.21
90	E40a_E41a	KnownJunction	0	43.76	46.37	43.89	53.69	56.92	15.70	42.75
91	ER41a	ExonRegion	0	62.96	49.04	71.67	76.26	55.45	26.45	71.40
92	E41a_E42a	KnownJunction	0	55.88	44.29	93.39	79.24	50.74	18.81	80.57
93	ER42a	ExonRegion	0	78.00	48.56	89.83	87.90	48.88	39.40	66.70
94	E42a_E43a	KnownJunction	0	86.10	58.16	83.69	92.46	43.94	32.08	83.48
95	ER43a	ExonRegion	0	76.73	57.26	81.04	74.59	41.21	30.68	59.33
96	E43a_E44a	KnownJunction	0	76.61	34.57	81.58	73.25	28.98	25.41	50.59
97	ER44a	ExonRegion	0	61.24	51.17	92.24	76.48	39.82	23.01	60.09
98	E44a_E45a	KnownJunction	1	60.83	42.11	91.21	78.62	51.27	12.92	46.79
99	ER45a	ExonRegion	0	73.88	57.70	99.99	83.00	44.98	23.45	68.38
100	E45a_E46a	KnownJunction	0	90.36	71.25	84.47	62.17	59.55	30.18	59.15
101	ER46a	ExonRegion	0	90.17	77.18	98.31	88.36	65.41	31.59	77.27
102	E46a_E47a	KnownJunction	0	94.53	87.64	104.96	118.33	45.94	36.18	77.29
103	ER47a	ExonRegion	0	130.41	62.89	118.60	102.48	73.04	33.80	92.89
104	E47a_E48a	KnownJunction	0	185.24	72.72	154.42	118.58	108.58	42.56	118.62
105	E47a_E49a	NovelJunction	0	5.21	12.06	4.10	7.23	0.00	12.41	0.73
106	ER48a	ExonRegion	0	179.05	79.36	135.86	102.10	118.17	28.30	124.08
107	E48a_E49a	KnownJunction	0	124.94	67.49	102.16	81.84	133.98	26.29	131.43
108	ER49a	ExonRegion	0	151.14	62.93	108.08	88.23	95.23	23.37	109.80
109	E49a_E50a	KnownJunction	1	119.97	31.18	84.63	94.20	83.45	20.07	81.73
110	ER50a	ExonRegion	0	148.12	47.24	108.87	102.94	91.38	26.06	94.55
111	E50a_E51a	KnownJunction	0	115.03	29.24	90.68	73.61	63.93	26.32	46.22
112	ER51a	ExonRegion	0	104.43	40.84	93.32	70.08	62.71	23.96	65.55
113	E51a_E52a	KnownJunction	0	123.51	52.54	101.34	79.46	53.64	27.52	82.25
114	ER52a	ExonRegion	0	99.98	56.12	95.65	72.77	55.75	27.71	70.00
115	E52a_E53a	KnownJunction	0	125.06	47.81	95.40	59.98	59.55	31.22	62.28
116	ER53a	ExonRegion	0	122.66	45.19	99.93	69.50	67.85	24.31	71.31
117	E53a_E54a	KnownJunction	0	89.52	25.82	100.38	72.41	67.20	22.86	55.94
118	I53_AR1	ActiveIntronRegion	0	5.70	9.12	2.15	9.42	0.89	2.67	0.37
119	ER54a	ExonRegion	0	162.74	49.53	130.86	109.73	89.69	29.17	79.66
120	E54a_E55a	KnownJunction	0	155.75	60.37	143.92	120.18	84.10	35.16	82.91
121	ER55a	ExonRegion	0	104.75	68.35	92.75	102.32	71.81	32.85	82.92
122	E55a_E56a	KnownJunction	0	62.97	95.52	82.67	111.02	70.27	40.55	92.55
123	ER56a	ExonRegion	0	79.35	58.89	86.94	108.40	65.83	38.09	81.49
124	E56_Da	NovelBoundary	1	31.48	10.51	8.61	6.91	2.07	0.00	4.23
125	E56a_E57a	KnownJunction	0	35.02	38.33	66.99	76.91	36.12	36.80	56.27
126	I56_SR1	SilentIntronRegion	1	20.43	4.52	6.53	1.99	1.26	2.07	4.22
127	I56_AR1	ActiveIntronRegion	1	31.42	6.45	7.22	3.18	1.77	2.85	3.24
128	ER57a	ExonRegion	0	65.80	58.82	89.73	97.99	58.32	33.48	67.87
129	E57a_E58a	KnownJunction	0	70.77	54.72	80.13	95.74	53.16	44.01	71.89
130	ER58a	ExonRegion	0	144.26	71.64	117.27	114.68	92.58	37.71	84.52
131	E58a_E59a	KnownJunction	0	230.35	97.31	169.01	141.85	107.36	60.97	98.10
132	ER59a	ExonRegion	0	143.49	88.38	134.46	116.41	113.72	41.71	98.58
133	E59a_E60a	KnownJunction	0	118.20	81.05	122.41	85.69	102.95	45.37	80.07
134	ER60a	ExonRegion	0	79.10	65.12	108.05	97.20	69.83	46.85	79.95
135	E60a_E61a	KnownJunction	0	49.09	78.81	80.82	106.31	74.25	29.61	81.57
136	ER61a	ExonRegion	0	25.51	47.26	45.34	59.58	62.77	17.29	52.23
137	E61a_E62a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
138	E61a_E63a	KnownJunction	1	0.00	0.00	3.10	9.35	9.22	3.03	4.89
139	E61a_E64a	NovelJunction	0	100.97	55.80	115.25	67.24	105.63	40.52	71.73
140	E62a_E64a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
141	ER62a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.04
142	E63a_E64a	KnownJunction	0	3.45	8.49	4.34	3.98	4.31	1.66	9.10
143	ER63a	ExonRegion	0	2.99	6.95	6.02	8.87	10.35	2.72	11.51
144	ER64a	ExonRegion	0	75.64	54.66	86.36	76.47	85.51	38.71	74.10
145	E64a_E65a	KnownJunction	0	77.51	75.14	96.21	85.91	97.77	57.06	79.42
146	ER65a	ExonRegion	0	153.41	62.14	138.94	99.87	114.59	68.79	92.65
147	E65a_E66a	KnownJunction	0	132.23	48.97	130.84	138.71	140.65	72.60	87.03
148	E66_Aa	NovelBoundary	1	60.27	0.00	62.54	0.00	9.08	3.43	3.15
149	ER66a	ExonRegion	0	106.05	44.39	88.74	73.89	74.49	45.83	62.48