Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RGS12	Gene	0	19.57	18.05	52.12	39.89	16.07	61.03	100.41
2	336727	Transcript	0	0	0	0	0	0	0	0
3	344733	Transcript	0	0	0	0	0	0	0	0
4	382788	Transcript	0	0.00	0.40	3.23	0.93	0.28	0.27	1.44
5	306648	Transcript	0	5.15	3.67	11.41	15.25	2.93	27.79	28.36
6	338806	Transcript	0	2.87	1.70	1.92	0.90	1.62	3.51	0.02
7	ER1a	ExonRegion	0	8.79	3.42	6.35	2.41	19.23	2.09	3.57
8	E1a_E2b	KnownJunction	0	0.00	3.02	0.00	0.00	0.00	1.42	0.00
9	ER2a	ExonRegion	0	0.00	0.81	0.23	0.00	0.00	0.41	0.00
10	ER2b	ExonRegion	1	27.14	26.31	25.18	9.05	19.08	11.04	8.79
11	E2a_E4a	KnownJunction	1	30.51	26.40	47.72	19.13	21.35	17.26	13.17
12	ER3a	ExonRegion	0	0.52	0.00	0.00	0.00	0.00	0.00	0.65
13	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	1	25.79	30.45	34.29	9.42	21.37	21.60	9.31
15	E4a_E6a	KnownJunction	1	13.64	14.40	18.48	4.69	7.03	9.33	2.67
16	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER5a	ExonRegion	0	2.87	1.70	1.92	0.90	1.62	3.51	0.02
18	I5_AR1	ActiveIntronRegion	0	13.61	8.35	12.73	4.65	3.68	4.71	4.86
19	I5_AR3	ActiveIntronRegion	1	9.86	12.05	5.03	2.43	3.08	9.32	2.22
20	I5_SR3	SilentIntronRegion	0	12.73	6.96	10.06	3.45	4.60	7.03	5.57
21	I5_AR4	ActiveIntronRegion	0	25.81	6.79	12.71	2.31	3.79	8.16	3.82
22	I5_SR4	SilentIntronRegion	0	22.39	5.22	14.63	3.93	3.88	4.67	7.47
23	I5_AR5	ActiveIntronRegion	0	11.33	1.68	5.21	2.71	4.87	3.06	2.50
24	I5_AR11	ActiveIntronRegion	1	0.16	0.30	9.47	9.50	0.00	0.00	27.21
25	ER6a	ExonRegion	0	13.69	17.01	29.13	10.66	7.66	12.71	29.77
26	I6_SR1	SilentIntronRegion	1	1.54	0.29	20.23	2.04	0.34	0.00	2.70
27	I6_AR1	ActiveIntronRegion	1	3.00	0.00	22.14	2.31	0.96	0.00	3.39
28	I6_AR8	ActiveIntronRegion	1	1.13	1.73	7.11	4.71	0.16	57.84	3.11
29	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER7a	ExonRegion	0	0.12	0.00	0.05	0.00	0.00	0.00	0.05
31	ER8a	ExonRegion	0	1.38	2.19	3.93	2.12	0.89	3.06	6.68
32	ER8b	ExonRegion	0	21.35	18.05	83.68	57.60	15.76	85.89	174.19
33	E8a_E9a	KnownJunction	0	32.24	21.62	109.67	65.18	22.11	121.56	252.83
34	ER9a	ExonRegion	0	27.93	29.16	135.86	114.29	18.80	170.02	283.08
35	E9a_E10a	KnownJunction	0	39.14	38.54	205.83	131.53	24.18	175.22	316.85
36	ER10a	ExonRegion	0	35.39	30.98	171.45	109.71	29.27	154.37	325.51
37	E10a_E11a	KnownJunction	0	36.17	26.72	168.39	92.14	28.19	111.86	309.27
38	ER11a	ExonRegion	1	34.05	19.27	119.05	84.29	24.55	106.30	260.55
39	E11a_E12a	KnownJunction	0	44.80	22.20	149.77	89.56	32.37	131.45	293.15
40	E12_Aa	NovelBoundary	0	2.72	5.10	13.54	12.73	1.18	11.26	4.26
41	ER12a	ExonRegion	0	40.48	25.97	123.68	81.49	24.53	96.92	265.65
42	E12_Da	NovelBoundary	1	6.58	8.59	26.28	9.89	0.97	22.91	5.60
43	E12a_E13a	KnownJunction	0	21.45	23.57	68.88	71.71	17.68	38.00	217.72
44	E12a_E14a	NovelJunction	0	0.65	0.00	2.23	5.82	1.06	8.66	1.55
45	I12	Intron	0	6.41	3.73	26.66	8.13	4.20	17.03	8.45
46	I12_AR1	ActiveIntronRegion	0	8.42	5.64	31.64	8.47	5.03	22.30	7.83
47	I12_SR1	SilentIntronRegion	1	4.41	4.94	22.49	12.10	1.94	17.83	9.16
48	I12_AR2	ActiveIntronRegion	1	4.60	4.08	23.17	11.33	3.14	22.58	11.53
49	I12_SR2	SilentIntronRegion	0	8.16	1.36	33.68	5.69	5.14	9.19	8.52
50	E13_Aa	NovelBoundary	1	1.60	2.57	26.82	3.17	2.14	4.80	8.81
51	ER13a	ExonRegion	1	15.93	27.99	65.58	77.46	16.82	52.78	200.50
52	E13_Da	NovelBoundary	1	4.37	1.26	14.01	7.69	1.08	11.04	3.98
53	E13a_E14a	KnownJunction	1	13.39	19.91	67.22	68.32	23.33	55.34	184.75
54	I13	Intron	1	2.53	2.63	21.25	5.40	1.38	16.42	3.09
55	I13_SR2	SilentIntronRegion	1	3.35	2.20	26.11	4.88	1.86	17.41	2.82
56	I13_AR1	ActiveIntronRegion	1	1.41	3.63	14.31	6.35	0.61	16.45	3.83
57	ER14a	ExonRegion	1	14.65	22.17	82.05	84.49	18.39	85.58	225.15
58	E14a_E15a	KnownJunction	1	11.33	24.22	67.68	101.02	13.35	110.23	273.04
59	ER15a	ExonRegion	1	18.16	25.13	95.76	106.38	16.80	135.39	334.73
60	E15a_E16a	KnownJunction	1	17.31	24.04	89.24	98.50	21.78	140.62	293.11
61	ER16a	ExonRegion	1	17.17	24.50	83.68	98.14	20.53	134.82	285.42
62	E16a_E17a	KnownJunction	1	28.61	19.47	121.07	91.78	16.92	151.87	387.05
63	ER17a	ExonRegion	0	39.06	28.22	141.96	100.49	23.88	175.84	302.76
64	E17a_E18a	KnownJunction	1	50.15	32.39	188.02	131.80	28.93	242.97	331.13
65	ER18a	ExonRegion	1	58.96	41.81	260.84	161.98	32.93	285.60	416.98
66	E18a_E19a	KnownJunction	1	22.30	12.32	182.92	66.62	10.28	97.18	194.03
67	E18a_E20a	KnownJunction	1	34.05	23.51	75.86	104.60	19.64	191.46	191.12
68	E19_Aa	NovelBoundary	1	0.95	1.47	21.57	1.27	4.43	0.00	5.13
69	ER19a	ExonRegion	1	39.18	17.12	226.76	83.18	15.72	105.54	208.03
70	E19a_E20a	KnownJunction	1	28.86	14.97	160.14	71.25	14.96	80.59	138.86
71	ER20a	ExonRegion	0	27.00	23.54	103.14	93.01	18.38	131.79	227.18
72	E20_Da	KnownBoundary	1	5.86	7.80	44.48	37.60	13.49	104.17	126.50
73	E20a_E21a	KnownJunction	0	2.30	7.59	12.93	31.70	0.00	21.15	27.22
74	ER20b	ExonRegion	1	11.26	13.46	43.39	49.83	12.39	116.08	130.92
75	E20_Db	KnownBoundary	0	0.00	0.00	7.17	4.52	0.00	0.99	5.06
76	ER20c	ExonRegion	0	0.00	0.00	6.23	1.86	0.57	0.13	2.87
77	ER21a	ExonRegion	0	2.79	7.12	9.42	24.46	2.15	14.62	21.25